Fungi associated with dried fish in Sri Lanka

The mycoflora of dried-salted fish from markets in Kandy, Sri Lanka was studied with emphasis on visibly spoiled dried fish. A total of 61 fungal isolates from 25 dried-fish were isolated and identified. The most prevalent fungus wasAspergillus niger. Species ofAspergillus flavus, A. fumigatus, A. glaucus, A. restrictus, Aureobasidium spp.Basipetospora halophila (a genuinely halophilic fungus)Cladosporium herbarum, Gliomastix, spp.,Penicillium chalybeum andPenicillium expansum were present. The isolated fungi did not grow in synthetic media containing more than 30% sodium chloride.Aureobasidium spp. andGliomastix spp. did not grow on dried-fish under laboratory conditions. The protective exoskeleton appeared to prevent fungal growth on dried shrimp. TheA. flavus strains isolated were not aflatoxigenic.     

生物防治稻田与普通稻田水体中浮游植物的生态特征研究

通过对大沙镇生物防治稻田及普能稻田水体中浮游植物的调查研究,共检出藻类112种,其中生物防治稻田中82种,普通稻田中89种,稻田水体中的浮游植物以硅藻、裸藻和绿藻占优势,在普通稻田中,硅藻种类数超过生物防治稻田,其优势度最高的5种藻类中除双对栅藻外,其余4种均为硅藻;而在生物防治稻田中,裸藻种类数高于普通稻田,且其优势度最高的5种藻类中有两种为裸藻,通过比较发现,生物防治稻田不体中浮游生物的密度明显高于普通稻田,对水体浮游植物多样性及均匀度的分析表明,稻田水体中的浮游植物自秧苗插上至干田期间,多样性指数略有上升（上要是由于种类数的增加引起的）,而均匀度呈下降趋势。     

Natural parasitism of Romanomermis iyengari (Welch) (Nematoda: Mermithidae) on various species of mosquitoes breeding in rice fields in Pondicherry,India

Natural habitat of Romanomermis iyengari, an entomophilic mermithid nematode, is rice field. Parasitism of this nematode on mosquito larvae breeding in rice fields in Pondicherry, India, has been studied in 1979. The present study was to find out its persistence in the same habitat, after many years of agricultural practices. Evaluation of parasitism on mosquito larvae was carried out during two rice cultivation seasons at a schedule of 1 week prior, and 1 and 2 weeks after transplantation of paddy. Larval stages of mosquito species such as Culex tritaeniorhynchus, Culex vishnui, Anopheles vagus, and Anopheles subpictus showed parasitism of R. iyengari. Parasitism was the highest on C. tritaeniorhynchus with a maximum of 15.38% during season I and 17.85% during season II. Followed by this, it was on A. vagus (10.82% and 9.43%), C. vishnui (7.37% and 8.69%), and A. subpictus (3.70% and 6.36%). The overall density of mosquito larvae and level of parasitism of R. iyengari on them during season II was significantly higher than that of season I. The parasitism was maximum at 1 week before transplantation and showed a decreasing trend towards 2 weeks after transplantation, during both the seasons. The level of natural parasitism of R. iyengari during the present investigation was higher than that observed in the same ecosystem almost 35 years ago. This is clearly an indication towards the capability of the nematode to withstand several years of agricultural practices, including pesticide and agrichemical application. Hence, if applied at sufficient level and frequency, this nematode could act as a successful biocontrol agent against mosquitoes breeding in rice fields.     

稻田生态系统生物硝化-反硝化作用与氮素损失

从土壤微生物生理学和土壤生物化学角度综述了稻田生态系统土壤生物硝化反硝化作用与氮素损失的研究进展,并探讨了土壤生物硝化反硝化作用在稻田生态系统氮素气态损失中的地位和重要性以及土壤生物硝化反硝化作用的测度方法的比较.     

Isolation and characterization of fluorescent Pseudomonas associated with the roots of rice and banana grown in Sri Lanka

Bacterial populations in different parts of the rhizosphere of rice and banana in Sri lanka were examined. On rice, the number of aerobic bacteria and the population of fluorescent bacteria were higher in the rhizoplane as compared to the exorhizosphere. However, the opposite was observed with banana. Percentage of fluorescent bacteria was significantly higher on banana (10.8%) than on rice from the wet and dry zones of Sri Lanka (4.3% and 2.7%, respectively). In the endorhizosphere fraction of rice, bacterial populations were very low. Fluorescent bacteria were absent.Based on 33 phenotypical tests, 89 fluorescent isolates were grouped into 5 clusters. The three major clusters covered the isolates belonging to the Pseudomonas fluorescens-putida group, whereas the remaining small clusters contained other UV-fluorescent bacteria. SDS-PAGE of total cell proteins enabled classification of the isolates into one of 12 different protein-polymorphic types. Only a partial correlation was found between the latter classification and the phenotypical one. Cyanogenesis was observed with strains of P. fluorescens only. Isolates P. fluorescens RW9S1 and P. cepacia RW5P1 displayed a potent antagonism against several fungi.     

水稻体内细菌的动态研究

经过对水稻两品种(沈农319、中百4号)不同时期、不同组织内生细菌动态变化研究结果表明,根组织带菌量最高,其次是叶,茎最低。发育阶段以孕穗期带菌量显着增高,随着组织衰老而降低。对分离到的4个主要种群显着性检验结果表明,巨大芽孢杆菌为两品种体内细菌优势种。通过对水稻这一世界性粮食作物体内细菌的种类,以及随生育期、组织间菌体数量变化的探讨研究,为水稻害虫的生物防治,提供遗传改良工程杀虫细菌的有效载体菌。     

Biodiversity and seasonal variation of the cyanobacterial assemblage in a rice paddy field in Fujian, China

Cyanobacteria are one of the main components of the microbiota in rice paddy fields and significantly contribute to its fertilization. The diversity and changes of the cyanobacterial assemblage were investigated during a rice growth season and after harvest in a paddy field located in Fujian Province, China. The cyanobacterial populations were analyzed by a semi-nested PCR, followed by denaturing gradient gel electrophoresis analysis. Twenty-four phylotypes were identified from the denaturing gradient gel electrophoresis profiles. The number of cyanobacterial phylotypes showed a seasonal variation and reached a peak in September, both in the upper (0-5 cm) and the deeper (10-15 cm) soil fractions. Some cyanobacterial sequences were only present during the rice growth season, while others were only found after harvest.     

水稻体内细菌的动态研究

经过对水稻两品种（ 沈农３１９ 、中百４ 号） 不同时期、不同组织内生细菌动态变化研究结果表明,根组织带菌量最高,其次是叶,茎最低．发育阶段以孕穗期带菌量显著增高,随着组织衰老而降低．对分离到的４ 个主要种群显著性检验结果表明,巨大芽孢杆菌为两品种体内细菌优势种．通过对水稻这一世界性粮食作物体内细菌的种类,以及随生育期、组织间菌体数量变化的探讨研究,为水稻害虫的生物防治,提供遗传改良工程杀虫细菌的有效载体菌．     

Reprint of: Biological control of rice insect pests in China

Rice is one of the most important food crops in the world. China has the second largest area of the rice growing in the world and the highest yield of rice produced. Infestation by insect pests, especially rice planthoppers, stem borers and leaf folders, is always a serious challenge to rice production in China. Current methods for controlling insect pests in China mainly include good farming practices, biological control, breeding and growing resistant varieties, and the use of chemical insecticides. However, for farmers, the favorite method for insect pest control is still the application of chemical insecticide, which not only causes severe environmental pollution and the resurgence of herbivores but also reduces populations of the natural enemies of herbivores. To control insect pests safely, effectively and sustainably, strategies encouraging biological control are currently demanded. Here we review the progress that has been made in the development and implementation of biological controls for rice in China since the 1970s. Such progress includes the species identification of the natural enemies of rice insect pests, the characterization of their biology, and the integration of biological controls in integrated pest management. To develop effective ecological engineering programs whose aim is to implement conservation biological controls, further research, including the evaluation of the roles of plants in non-crop habitats in conservation biological controls, volatiles in enhancing efficiency of natural enemies and natural enemies in manipulating insect pests, and education to increase farmers’ knowledge of biological controls, is proposed.     

Constraints to the implementation of biological control in Sri Lanka

Sri Lanka is a tropical island with a rich diversity of arthropods, with many species of indigenous natural enemies of economic pests. However, no extensive island wide surveys have been carried out for natural enemies of major crop ecosystems and only a few of the indigenous natural enemies are reported useful for augmentation biological pest control by massive field releases of laboratory-produced insects. Most successful biological control programs on the island are importation (i.e. classical) biological control programs, where established exotic natural enemies control certain pest populations in valuable crops. There is growing interest in the use of native natural enemies in pest management, thus creating a need for intensive research on the ecology of indigenous natural enemies and development of infrastructure and technology to produce natural enemies for augmentation. This paper examines constraints and opportunities for implementation of biological control in Sri Lanka.     

Nitrogen mineralization ofSesbania sesban used as green manure for lowland rice in Sri Lanka

Sesbania sesban was evaluated as green manure crop for lowland rice in the Dry Zone of Sri Lanka. The legume was grown during a fallow period before lowland rice (Oryza sativa) and ploughed under just before transplanting. Weight loss and nitrogen content in litterbags containing leaves, stems and roots of the legume were monitored. Comparisons were made between rice yields from 20 m² plots after green manuring in combination with different nitrogen fertilizer levels (0, 2.4, 4.8 and 7.2 gm⁻²) and nitrogen fertilizer (9.6 gm⁻²) alone. Above-ground biomass ofS. sesban was 440 gm⁻² (dry wt) when ploughed under after 84 days growth. N-content in leaves, stems and roots was 3.76%, 0.41% and 0.73%, respectively. This gave a N-input fromS. sesban of 9.2 gm⁻² (8.3 g from above-ground parts and 0.9 g from roots). The corresponding K and P inputs were 7.3 and 0.6 gm⁻² respectively. The nitrogen rich leaves, which contained 88% of the nitrogen in the above-ground parts, decomposed and released its nitrogen much more rapidly than the stems and roots. After only four days the leaves had released 5.3 g Nm⁻² and after 14 days they had released 6.4 g Nm⁻². The highest rice yield (505 gm⁻²) was obtained usingS. sesban and 4.8 gm⁻² of N-fertilizer. The yields with only N-fertilizer or onlyS. sesban were 442 gm⁻² and 396 gm⁻², respectively. Due to the rapid decomposition of the nitrogen rich leaves,S. sesban did not behave as a slow release fertilizer. Thus, it is not necessary to apply nitrogen fertilizers as a basal dose.     

Host searching behavior and potential of an aquatic ichneumonid pupal parasitoid of rice caseworm (Parapoynx stagnalis) in an upland rice paddy agro-ecosystem of the Western Ghats,India

Parapoynx stagnalis (Zeller) (=Nymphula depunctalis (Guenée), is a sporadic rice paddy pest of south and southeast Asian rice paddy fields, and widely known as rice caseworm. A recent outbreak of the pest was observed in the upland rice paddy agro-ecosystem of the central Western Ghats, India. No potential natural enemies of this pest have so far been reported, mainly due to the semi-aquatic behavior of the larvae and pupae. However, an undescribed aquatic ichneumonid wasp species (belonging to a genus near Litochila) is reported as a potentially useful early stage pupal parasitoid of this pest in our study. The host searching behavior and potential of the parasitoid wasp was studied in detail using both field and laboratory experiments. The adult female wasps usually dive into the water in search of the host pupae, remaining under water for a maximum of 90.2s, while searching for rice caseworm pupae. In field and laboratory experiments, we found 73% of the parasitized pupae of P. stagnalis kept under water yielded adult parasitic wasps. However, no parasitoids emerged from parasitized host pupae maintained in dry terrariums. Sex ratio was 2.8:1. The present discovery of the semi-aquatic parasitoid wasp could aid in better management of the rice caseworm population in rice paddy fields.     

Shifts in aquatic macroinvertebrate biodiversity associated with the presence and size of an alien crayfish

To investigate the effects of Procambarus clarkii on macroinvertebrate diversity, we conducted a mesocosm experiment simulating small pools in rice field pads after the rice season. We hypothesized that crayfish predation would negatively impact macroinvertebrate diversity, and the magnitude of this impact should vary with the size of P. clarkii. We conducted a short-term mesocosm experiment to determine macroinvertebrate diversity in the presence of three size classes and in the absence of crayfish, as well as the diet composition of crayfish from the three size classes. At the end of the experiments, the diet of crayfish was composed of the most available taxa (Culicidae, Chironomus, Tanytarsini and Orthocladinae). These results also show evidence that, in confined areas, crayfish are important predators of major rice pests such as rice Chironominae larvae. Macroinvertebrate diversity was negatively affected by crayfish presence, but the effect was inversely proportional to crayfish size. The highest diversity index was obtained in the absence of P. clarkii, and juvenile crayfish significantly reduced macroinvertebrate diversity. Thus, the impact of P. clarkii on aquatic macroinvertebrates is size dependent and may be relevant in small pools formed in rice field pads from early autumn to late winter. Overall, our findings suggest that the negative effects of P. clarkii on macroinvertebrate diversity may be particularly strong in local natural assemblages confined to puddles of water or small ponds in wetland areas.     

Two different begomovirus species are associated with yellow vein mosaic disease of okra in Sri Lanka

Molecular Biology Reports - Yellow vein mosaic disease is the major biotic constraint of okra cultivation in Sri Lanka. Identification and detailed molecular characterization of associated pathogen...     

Mitochondrial DNA modifications associated with cytoplasmic male sterility in rice

Summary Mitochondrial DNA was isolated from fertile and cytoplasmic male sterile lines of rice. Restriction analysis showed specific modifications in the male sterile cytoplasm. In addition to the major mitochondrial DNA, three small plasmid-like DNA molecules were detected by agarose gel electrophoresis in both cytoplasms. An additional molecule was specifically found in the sterile cytoplasm. These mitochondrial DNA modifications support the hypothesis of the mitochondrial inheritance of the cytoplasmic male sterility in rice.     

Effect of fenthion treatment on larval densities of insecticide-resistant Culex quinquefasciatus in an urban area of Sri Lanka

Abstract. In Sri Lanka the national Anti-Filaria Campaign (AFC) has routinely employed fenthion since 1974 for larvicidal control of Culex quinquefasciatus , the vector of Bancroftian filariasis in urban areas, where this mosquito breeds prolifically in polluted waters. During 1994 the efficacy of AFC fenthion treatment against organophosphate-resistant Cx quinquefasciatus was investigated at Dehiwela, near Colombo.
The AFC target rate of fenthion application was 1 mg a.i./l, but the actual concentrations of fenthion in freshly treated pits ranged from 0.64 to 63.2 mg a.i./l. There was significant suppression of larval densities in treated soakage pits, the predominant breeding site of Cx quinquefasciatus , although the mosquito population was 6-fold resistant to fenthion at the LC_W level. Production of pupae was almost completely prevented in soakage pits which were sprayed weekly with fenthion, indicating that adult mosquito emergence from this source was minimal. The rapid decline in concentration of fenthion detected in the water of soakage pits indicated that a weekly treatment schedule is essential for effective control. With the rapid recolonization of treated sites, the weekly schedule must be strictly implemented in order to achieve control of resistant larvae. Fenthion activity levels detected in treated pits suggest that a 7–10 day schedule of retreatment would completely suppress susceptible Cx quinquefasciatus.     

基于民族生态学视角的哈尼梯田农业生态系统水资源管理

作为山地农业的典型模式之一,哈尼梯田以其悠久历史和文化景观成为世界文化遗产和全球重要农业文化遗产。哈尼梯田农业生态系统的成功之处在于有效的水资源管理,但对其制度建设和生态文化内涵的综合分析尚待完善。基于民族生态学视角,结合生态学、民族学等自然科学和社会科学的理论与方法,对哈尼梯田水资源管理的制度建设及其生态文化内涵进行解读。研究表明,哈尼族社区通过以涵养和分配为核心的水资源管理制度建设完美地解决了水资源时空分布不均这一难题,而以迁徙文化、宗教文化、习惯法以及传统知识为支柱构建的生态文化体系则是保障水资源管理制度建设和有效实施的生态文化内涵。哈尼梯田水资源管理的制度建设与生态文化理念对于应对气候变化、促进农业可持续发展以及完善我国的水资源管理制度理论体系具有重要的借鉴价值。     

Analysis of genes associated with retrotransposons in the rice genome

Retrotransposons comprise a significant fraction of the rice genome. Despite their prevalence, the effects of retrotransposon insertions are not well understood, especially with regard to how they affect the expression of genes. In this study, we identified one-sixth of rice genes as being associated with retrotransposons, with insertions either in the gene itself or within its putative promoter region. Among genes with insertions in the promoter region, the likelihood of the gene being expressed was shown to be directly proportional to the distance of the retrotransposon from the translation start site. In addition, retrotransposon insertions in the transcribed region of the gene were found to be positively correlated with the presence of alternative splicing forms. Furthermore, preferential association of retrotransposon insertions with genes in several functional classes was identified. Some of the retrotransposons that are part of full-length cDNA (fl-cDNA) contribute splice sites and give rise to novel exons. Several interesting trends concerning the effects of retrotransposon insertions on gene expression were identified. Taken together, our data suggests that retrotransposon association with genes have a role in gene regulation. The data presented in this study provides a foundation for experimental studies to determine the role of retrotransposons in gene regulation.     

Juvenile hormone-mediated reproduction induced by a sublethal concentration of imidacloprid in Cyrtorhinus lividipennis (Hemiptera: Miridae)

The Hemipteran predator, Cyrtorhinus lividipennis, feeds on the eggs and nymphs of rice planthoppers and leafhoppers. We previously demonstrated that sublethal concentrations of imidacloprid stimulated the reproduction of C. lividipennis. Considering the essential roles of juvenile hormone (JH) in insect reproduction, we speculated that sublethal concentrations of imidacloprid may stimulate the reproduction of C. lividipennis by regulating JH level. To test this, we cloned C. lividipennis JH acid methyl transferase (ClJHAMT) and JH esterase (ClJHE), which are responsible for JH biosynthesis and degradation genes, respectively. We then knocked down ClJHAMT by injecting dsRNA into C. lividipennis nymphs and found that emerging female adults exhibited 88.8% lower expression of the vitellogenin gene (ClVg) and the number of eggs was reduced by 41.5% as compared with controls. Silencing ClJHE increased ClVg mRNA expression by 275.0% but did not affect fecundity. A sublethal concentration of imidacloprid (LC₂₀) increased the JH titer in females by 35.3% and 60.6% at 24 and 48 h post-emergence, respectively. In treatments containing both imidacloprid and dsJHAMT, the silencing of CLJHAMT reduced the number of eggs produced by adult females by 21.4% as compared to the control (imidacloprid + dsGFP). Our results indicated that sublethal concentration of imidacloprid may induce C. lividipennis reproduction by upregulating JH level via JHAMT. The finding could provide valuable information for improved integration of C. lividipennis and insecticides in pest management.