Fossil wood of the Juglandaceae: Some questions of taxonomy,evolution, and phylogeny in the family based on wood anatomy

Some problems in the taxonomy of the Juglandaceae are discussed based on wood anatomy; the identification of fossil juglandaceous wood is considered. Data on fossil wood of the Juglandaceae are summarized; a key for identification of wood anatomy in modern and fossil Juglandaceae is compiled. Wood anatomical characters in members of the family are discussed in the light of major evolutionary trends in the secondary xylem of dicots, and a comparative characterization of members of the family is developed. A hypothesis is proposed that the subfamily Engelhardioideae is the most primitive member of the Juglandaceae based on wood anatomy, the tribe Juglandeae and subfamily Platycaryoideae are slightly more highly specialized, and the tribe Hicorieae is the most advanced. Evolutionary relationships between the members of the Juglandaceae are reviewed based on wood anatomy.     

Systematic and phylogenetic implications of the wood anatomy of six Neotropical genera of Primulaceae

Our main goals were to identify diagnostic characters at the species, genus, and subfamily levels, find anatomical features with potential for future morphological and molecular (combined) phylogenetic analyses, and to reconstruct the evolution of wood anatomical characters in two subfamilies of Primulaceae in a molecular phylogenetic framework. We investigated twenty-seven species from the woody Myrsinoideae (4 genera) and Theophrastoideae (2 genera) using scanning electron, light, and epifluorescence microscopy. Samples were prepared using standard protocols. Based on the wood anatomical characters, we were able to identify synapomorphies and to detect evolutionary trends of interest for the genera and subfamilies. Both subfamilies share the presence of diffuse porosity, simple perforation plates, septate fibres, and scanty paratracheal axial parenchyma. Theophrastoideae species have rays?>?10 cells wide and short (<?350 µm) vessel elements, and Myrsinoideae have breakdown areas in rays and longer vessel elements. Ardisia and Stylogyne have scalariform intervessel pits, Myrsine exhibit breakdown areas in rays, and two Cybianthus species from subgenus Weilgetia have distinguishing features (e.g., scalariform perforation plate in C. nemoralis and the absence of rays in C. densiflorus). Overall, when combining characters, we were able to segregate the Neotropical Primulaceae subfamilies and genera from each other and from the subfamily Maesoideae based on wood anatomy.     

How much can cladistics tell us about early hominid relationships?

Although cladistic analysis has been used to compare hypotheses of relationships among early hominids, the outcomes of different studies have depended entirely on the assumptions made by different investigators. Problems include the close genetic relationship of early hominid taxa, small fossil sample sizes, possible correlations among characters, and a lack of understanding about the evolutionary factors affecting characters. This study investigates the interaction of some of these problems affecting early hominid phylogenetics. Monte Carlo simulations of character state evolution in closely related taxa demonstrate that the sample sizes and close genetic relationships of early hominids do not permit cladistic analyses to obtain unequivocal results. Even with unrealistically good assumptions about the evolutionary dynamics affecting characters, the probability of the most parsimonious hypothesis being true is unacceptably small. In the face of these problems, even phylogenetic statements that are supported by a strong consensus of cladistic studies may nevertheless be in error, and such errors are likely to confound the placement of new specimens and taxa. Advancement in our knowledge of hominid phylogeny can depend only on a fuller understanding of the natural history and evolutionary dynamics of traits.     

WOOD ANATOMY OF THE AMERICAN FRANKENIAS (FRANKENIACEAE): SYSTEMATIC AND EVOLUTIONARY IMPLICATIONS

Results of a comparative wood anatomical survey of the American frankenias are presented. The eleven species examined are woody perennials occurring almost exclusively in arid and semiarid regions and on saline and gypseous soils. The secondary xylem of all species is highly specialized and is characterized by libriform fibers, vessel elements with simple perforation plates, and the absence of rays. Axial elements of all species are quite small. A number of unusual features, e.g., anomalous secondary growth and formation of interxylary cork, were observed in some species. Nonfibrous woods have evolved independently in two species of reduced stature and contrast markedly with the highly fibrous woods of most species. Woods of the American frankenias are compared with those of the Tamaricaceae. The systematic and evolutionary implications of interspecific variation in both qualitative and quantitative features are discussed. There is a general tendency for dimensions of the axial wood elements to be positively associated and to decrease with decreasing plant height. In general, differences in wood anatomy more strongly reflect differences in plant growth form and size than phylogeny.     

New species of <Emphasis Type="Italic">Piceoxylon</Emphasis> Gothan (Pinaceae) from the Cretaceous and Paleogene of the northwestern Kamchatka Peninsula

New fossil species of Piceoxylon (Pinaceae), P. talovskiense sp. nov. and P. kamtschatkiense sp. nov., are described on the basis of wood anatomy from the Cretaceous and Paleogene (respectively) of the Talovka River basin in the northwestern Kamchatka Peninsula. The Late Cretaceous P. talovskiense sp. nov. shows wood characters of modern Picea. The wood anatomy of the Paleogene Piceoxylon kamtschatkiense sp. nov. is somewhat similar to those of modern Picea sitchensis and P. jezoensis. Fossil woods of Piceoxylon have been found in the Kamchatka Peninsula for the first time.     

Fossil wood of <Emphasis Type="Italic">Abietoxylon shakhtnaense</Emphasis> sp. nov. (Pinaceae) from the Upper Oligocene-Lower Miocene deposits of Southeastern Sakhalin

A new species, Abietoxylon shakhtnaense (Pinaceae), was erected on the basis of fossil wood anatomical characters from the Upper Oligocene-Lower Miocene deposits of Southeastern Sakhalin. A. shakhtnaense is similar to wood of firs Abies sachalinensis, A. magnifica, and A. grandis. Fossil wood with features characterizing fir anatomical structure was found in Sakhalin for the first time.     

Fossil angiosperm wood: its role in the reconstruction of biodiversity and palaeoenvironment

Fossil wood is subject to different taphonomic, sampling and recognition biases in the palaeobotanical record when compared with leaves and palynomorphs. Wood therefore provides a systematically independent source of information that can increase our knowledge of past biodiversity and environments. Increase in fossil wood records from Cretaceous and Tertiary sediments helps further the understanding of trends in anatomical specialization through geological time. These data can then be used to distinguish such specialization from anatomical response to environmental change. Two case studies, a Late Cretaceous early Tertian' wood flora from Antarctica and a lower Tertiary w ood flora from southern England, have been used to exemplify the importance of studying the fossil wood component of palaeofloras.     

Distinguishing heat from light in debate over controversial fossils

Fossil organisms offer our only direct insight into how the distinctive body plans of extant organisms were assembled. However, realizing the potential evolutionary significance of fossils can be hampered by controversy over their interpretation. Here, as a guide to evaluating palaeontological debates, we outline the process and pitfalls of fossil interpretation. The physical remains of controversial fossils should be reconstructed before interpreting homologies, and choice of interpretative model should be explicit and justified. Extinct taxa lack characters diagnostic of extant clades because the characters had not yet evolved, because of secondary loss, or because they have rotted away. The latter, if not taken into account, will lead to the spurious assignment of fossils to basally branching clades. Conflicting interpretations of fossils can often be resolved by considering all the steps in the process of anatomical analysis and phylogenetic placement, although we must accept that some fossil organisms are simply too incompletely preserved for their evolutionary significance to be realized.     

Caryophyllales: a key group for understanding wood anatomy character states and their evolution

Definitions of character states in woods are softer than generally assumed, and more complex for workers to interpret. Only by a constant effort to transcend the limitations of glossaries can a more than partial understanding of wood anatomy and its evolution be achieved. The need for such an effort is most evident in a major group with sufficient wood diversity to demonstrate numerous problems in wood anatomical features. Caryophyllales s.l., with approximately 12 000 species, are such a group. Paradoxically, Caryophyllales offer many more interpretive problems than other ‘typically woody’ eudicot clades of comparable size: a wider range of wood structural patterns is represented in the order. An account of character expression diversity is presented for major wood characters of Caryophyllales. These characters include successive cambia (more extensively represented in Caryophyllales than elsewhere in angiosperms); vessel element perforation plates (non‐bordered and bordered, with and without constrictions); lateral wall pitting of vessels (notably pseudoscalariform patterns); vesturing and sculpturing on vessel walls; grouping of vessels; nature of tracheids and fibre‐tracheids, storying in libriform fibres, types of axial parenchyma, ray anatomy and shifts in ray ontogeny; juvenilism in rays; raylessness; occurrence of idioblasts; occurrence of a new cell type (ancistrocladan cells); correlations of raylessness with scattered bundle occurrence and other anatomical discoveries newly described and/or understood through the use of scanning electron microscopy and light microscopy. This study goes beyond summarizing or reportage and attempts interpretations in terms of shifts in degrees of juvenilism, diversification in habit, ecological occupancy strategies (with special attention to succulence) and phylogenetic change. Phylogenetic change in wood anatomy is held to be best interpreted when accompanied by an understanding of wood ontogeny, species ecology, species habit and taxonomic context. Wood anatomy of Caryophyllales demonstrates problems inherent in binary character definitions, mapping of morphological characters onto DNA‐based trees and attempts to analyse wood structure without taking into account ecological and habital features. The difficulties of bridging wood anatomy with physiology and ecology are briefly reviewed. © 2010 The Linnean Society of London, Botanical Journal of the Linnean Society, 2010, 164 , 342–393.     

Palaeoecology of the Miocene El Cien Formation (Mexico) as determined from wood anatomical characters

In order to establish the general environmental conditions under which the plants of the El Cien Formation grew during the Miocene, wood anatomical features from several extant ecological categories (southern California flora) and communities (Brazil, Mexico and Suriname) as well as those of the El Cien paleocommunity were analysed using different statistical approaches. We find a significant correlation between 42 characters of 199 species and 11 climate variables which suggests a close association of wood characters with temperature, whereas characters such as diameter, frequency, and grouping of vessels are more closely related to evaporation. The expression of various wood characters depends on more than one climate variable. There are no doubts regarding the tropical affiliation of the El Cien fossil flora but water availability and seasonality of the system are less clear. Principal component and cluster analyses of two different datasets (423 species, 9 characters and 223 species, 32 characters) suggest that the physiognomy of the fossil assemblage of El Cien was highly efficient in water transport, but also highly vulnerable to embolisms. Characters such as vessel diameter, frequency and grouping suggest proximity to a tropical rain forest, whereas the proportion of ring semi ring porous woods brings the El Cien paleoflora closer to forests with slightly xeromorphic physiognomy, probably a tropical deciduous or semi-deciduous forest. This condition is paralleled with the taxonomic composition of the El Cien fossil plants since their Nearest Living Relatives (NLR) can be referred to both humid or more (seasonally) dry environments. Derived regression analysis models suggest that the paleoflora prospered under conditions with an evaporation regime similar to that of the tropical rain forest.     

MULTIVARIATE COMPARISON OF FOSSIL AND RECENT GINKGO WOOD

Multivariate statistical analysis of the anatomical structure of the wood of Recent Ginkgo biloba L. and of fossil Ginkgo beckii Scott, Barghoorn, & Prakash revealed significant differences not apparent through general microscopic observation. On the basis of a multiple discriminant analysis by computer of 10 anatomical characters, the living and fossil Ginkgo woods were separated into two distinct groups. All Recent wood specimens were classified into a single disjoint group by the computer, and all fossil wood specimens were classified into another without misclassifications when all 10 characteristics were included in the analysis. Three characters—number of pits per millimeter of tracheid length on radial wall, ray height, and tangential diameter of late wood tracheids—accounted for most of the discrimination between the two groups.     

Are palaeoscolecids ancestral ecdysozoans?

SUMMARY The reconstruction of ancestors is a central aim of comparative anatomy and evolutionary developmental biology, not least in attempts to understand the relationship between developmental and organismal evolution. Inferences based on living taxa can and should be tested against the fossil record, which provides an independent and direct view onto historical character combinations. Here, we consider the nature of the last common ancestor of living ecdysozoans through a detailed analysis of palaeoscolecids, an early and extinct group of introvert‐bearing worms that have been proposed to be ancestral ecdysozoans. In a review of palaeoscolecid anatomy, including newly resolved details of the internal and external cuticle structure, we identify specific characters shared with various living nematoid and scalidophoran worms, but not with panarthropods. Considered within a formal cladistic context, these characters provide most overall support for a stem‐priapulid affinity, meaning that palaeoscolecids are far‐removed from the ecdysozoan ancestor. We conclude that previous interpretations in which palaeoscolecids occupy a deeper position in the ecdysozoan tree lack particular morphological support and rely instead on a paucity of preserved characters. This bears out a more general point that fossil taxa may appear plesiomorphic merely because they preserve only plesiomorphies, rather than the mélange of primitive and derived characters anticipated of organisms properly allocated to a position deep within animal phylogeny.     

Monophyly, phylogeny and systematic position of the †Synechodontiformes (Chondrichthyes, Neoselachii)

Klug, S. (2009). Monophyly, phylogeny and systematic position of the †Synechodontiformes (Chondrichthyes, Neoselachii). — Zoologica Scripta, 39 , 37–49.
Identifying the monophyly and systematic position of extinct sharks is one of the major challenges in reconstructing the phylogeny and evolutionary history of sharks in general. Although great progress has been accomplished in the last few decades with regard to resolving the interrelationships of living sharks, a comprehensive phylogeny identifying the systematic position of problematic or exclusively fossil taxa is still lacking. Fossil taxa traditionally assigned to synechodontiform sharks are very diverse with a fossil record extending back into the Palaeozoic but with uncertain inter- and intrarelationships. Here, phylogenetic analyses using robust cladistic principles are presented for the first time to evaluate the monophyly of this group, their intrarelationships and their systematic position within Neoselachii. According to the results of this study, taxa assigned to this group form a monophyletic clade, the †Synechodontiformes. This group is sister to all living sharks and displays a suite of neoselachian characters. Consequently, the concept of neoselachian systematics needs to be enlarged to include this completely extinct group, which is considered to represent stem-group neoselachians. The origin of modern sharks can be traced back into the Late Permian (250 Mya) based on the fossil record of †Synechodontiformes. The systematic position of batoids remains contradictory, which relates to the use of different data (molecular vs. morphological) in phylogentic analyses.     

Phylogenetic implications of corolla morphology in subfamily Barnadesioideae (Asteraceae)

The previously insignificant and small South American subtribe Barnadesiinae of tribe Mutisieae has been shown recently to be ancient within Asteraceae. Due to absence of a 22 kb diagnostic chloroplast inversion, plus other features, this subtribe has been elevated to subfamilial status as Barnadesioideae, now containing 90 species in nine genera. Recent cladistic analyses at the generic and specific levels based on morphology and DNA sequences (ITS and trnL intron) have revealed different relationships among taxa of the subfamily. To better understand these conflicts, we analyze specific morphological features of corollas (shape and vascularization) to develop trends (trees) in these features based on minimal structural change (i.e., morphological parsimony), and to compare these with relationships among genera derived from the two recent cladistic analyses. We define six principal types of corollas in Barnadesioideae (tubular, split, double split, ligulate, subbilabiate and bilabiate) and six principal types of corolla vascularization patterns (combinations of presence or absence of central bundles, fusion of adjacent bundles and fusion of bundles at the apex of corolla lobes). In all features we assume character states in Calyceraceae to be ancestral. In corolla shape, from tubular ancestry, we hypothesize two general evolutionary trends within the subfamily: (1) splitting of the tube, and (2) flattening of the tube. In vascularization of corollas, from an ancestral condition of one central and one lateral bundle in each corolla lobe and all traces fused at the apex, we hypothesize four basic trends: (1) gain or (2) loss of lateral vascular traces in each lobe, (3) loss of the central vein, and (4) loss of fusion of traces in lobe apices. These morphological trends allow tests of the two previous phylogenetic hypotheses by (1) counting step changes (following steps in the morphological network) in the two characters on the two competing phylogenetic trees and (2) constructing an index of morphological advancement for each genus (based on morphological trees of the two characters) and correlating these with cladistic distances within the two phylogenies. Results of both tests reveal the molecular phylogeny to be more compatible with evolutionary inferences from the two morphological features. With Fulcaldea excluded, a highly significant correlation is seen between morphological advancement and cladistic distance in the molecular phylogeny.     

Evolutionary constraints in hind wing shape in Chinese dung beetles (Coleoptera: Scarabaeinae)

This study examines the evolution hindwing shape in Chinese dung beetle species using morphometric and phylogenetic analyses. Previous studies have analyzed the evolution of wing shape within a single or very few species, or by comparing only a few wing traits. No study has analyzed wing shape evolution of a large number of species, or quantitatively compared morphological variation of wings with proposed phylogenetic relationships. This study examines the morphological variation of hindwings based on 19 landmarks, 119 morphological characters, and 81 beetle species. Only one most parsimonious tree (MPT) was found based on 119 wing and body characters. To better understand the possible role of the hindwing in the evolution of Scarabaeinae, additional phylogenetic analyses were proposed based on the only body features (106 characters, wing characters excluded). Two MPT were found based on 106 body characters, and five nodes were collapsed in a strict consensus. There was a strong correlation between the morphometric tree and all phylogenetic trees (r>0.5). Reconstructions of the ancestral wing forms suggest that Scarabaeinae hindwing morphology has not changed substantially over time, but the morphological changes that do occur are focused at the base of the wing. These results suggest that flight has been important since the origin of Scarabaeinae, and that variation in hindwing morphology has been limited by functional constraints. Comparison of metric disparity values and relative evolutionary sequences among Scarabaeinae tribes suggest that the primitive dung beetles had relatively diverse hindwing morphologies, while advanced dung beetles have relatively similar wing morphologies. The strong correlation between the morphometric tree and phylogenetic trees suggest that hindwing features reflect the evolution of whole body morphology and that wing characters are suitable for the phylogenetic analyses. By integrating morphometric and cladistic approaches, this paper sheds new light on the evolution of dung beetle hind wings.     

Integration, phylogeny, and the hominid cranial base

Basicranial features were examined in catarrhine primates and early hominids in order to demonstrate how information about morphological integration can be incorporated into phylogenetic analysis. Hypotheses purporting to explain the functional and structural relationships of basicranial characters were tested using factor analysis. Characters found to be functionally or structurally related to each other were then further examined in order to determine whether there was evidence that they were phylogenetically independent. If phylogenetic independence could not be demonstrated, then the characters were presumed to be integrated and were grouped into a complex. That complex was then treated as if it were a single character for the purposes of cladistic analysis. Factor analysis revealed that five basicranial features may be structurally related to relative brain size in hominoids. Depending on how one defines phylogenetic independence, as few as two, or as many as all of those characters might be morphologically integrated. A cladistic analysis of early hominids based on basicranial features revealed that the use of integrated complexes had a substantial effect on the phylogenetic position of Australopithecus africanus, a species whose relationships are poorly resolved. Moreover, the use of complexes also had an effect on reanalyses of certain published cladistic data sets, implying that those studies might have been biased by patterns of basicranial integration. These results demonstrate that patterns of morphological integration need to be considered carefully in all morphology-based cladistic analyses, regardless of taxon or anatomical focus. However, an important caveat is that the functional and structural hypotheses tested here predicted much higher degrees of integration than were observed. This result warns strongly that hypotheses of integration must be tested before they can be adequately employed in phylogenetic analysis. The uncritical acceptance of an untested hypothesis of integration is likely to be as disruptive to a cladistic analysis as when integration is ignored.     

Wood anatomy of the subfamily Crotonoideae (Euphorbiaceae s.s.) from India: systematic implications with special reference to the taxonomic delimitation of Givotia and Vernicia

The wood anatomy of 15 representative species belonging to 12 genera of nine tribes of the subfamily Crotonoideae (Euphorbiaceae) are comprehensively described with focus on systematic implications. In addition, ecological and evolutionary aspects are evaluated. An identification key to the species based on wood anatomical features is presented. The wood microstructure of the tribes was found to be considerably heterogeneous reflecting an unnatural classification of the subfamily. However, the results confirm the generic relationship within subtribe Aleuritinae and tribe Ricinodendreae. Vernicia and Givotia may be recognized based on wood anatomical and morphological characters. The tribes Micrandreae and Adenoclineae have considerable similarity in wood anatomy. The wood structure of the monogeneric tribes Trigonostemoneae and Geloneae idicate a close relationship with the tribe Crotoneae.     

Anatomical diversity and regressive evolution in trichomanoid filmy ferns (Hymenophyllaceae): a phylogenetic approach

To infer the anatomical evolution of the Hymenophyllaceae (filmy ferns) and to test previously suggested scenarios of regressive evolution, we performed an exhaustive investigation of stem anatomy in the most variable lineage of the family, the trichomanoids, using a representative sampling of 50 species. The evolution of qualitative and quantitative anatomical characters and possibly related growth-forms was analyzed using a maximum likelihood approach. Potential correlations between selected characters were then statistically tested using a phylogenetic comparative method. Our investigations support the anatomical homogeneity of this family at the generic and sub-generic levels. Reduced and sub-collateral/collateral steles likely derived from an ancestral massive protostele, and sub-collateral/collateral types appear to be related to stem thickness reduction and root apparatus regression. These results corroborate the hypothesis of regressive evolution in the lineage, in terms of morphology as well as anatomy. In addition, a heterogeneous cortex, which is derived in the lineage, appears to be related to a colonial strategy and likely to a climbing phenotype. The evolutionary hypotheses proposed in this study lay the ground for further evolutionary analyses that take into account trichomanoid habitats and accurate ecological preferences.     

The role of wood anatomy in phylogeny reconstruction of Ericales

The systematic significance of wood anatomical characters within Ericales is evaluated using separate and combined parsimony analyses including 23 wood characters and 3945 informative molecular characters. Analyses of wood features alone result in poorly resolved and conflicting topologies. However, when pedomorphic character states are coded as inapplicable, the combined bootstrap topology results in an increase of resolution and support at most deeper nodes compared with the molecular analyses. This suggests that phylogenetic information from the limited number of morphological characters is not completely swamped by an overwhelming amount of molecular data. Based on the morphology of vessels and fibers, and the distribution of axial parenchyma, two major wood types can be distinguished within Ericales: (i) a “primitive” type, nearly identical to the wood structure in the more basal outgroup Cornales, which is likely to have persisted in one major clade, and (ii) a “derived” type that must have evolved in at least two separate evolutionary lines. The occurrence of the first type is strongly correlated with shrubs to small trees growing in cold temperate or tropical montane regions, while the second type is common in tall trees of tropical lowlands. This favors the inclusion of ecologically adaptive features in phylogeny reconstruction. © The Willi Hennig Society 2006.