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1.
Restriction endonuclease fragment analysis of nuclear ribosomal DNA (rDNA) was completed on 25 individuals each from seven populations of theLisianthius skinneri (Gentianaceae) species complex in Panama. Seven restriction enzymes were used to determine the amount and type of rDNA variation within and among individuals of the populations. No restriction site variation was seen within populations or individuals although site differences were seen among populations. Spacer length variation within and among individuals of populations was mapped to the internal transcribed spacer (ITS) region between the 18S and 5.8S rRNA genes, a region inLisianthius rDNA that previously was shown to exhibit length differences among populations. This is the first reported case of such variation within and among individuals of populations for the ITS region. Presence or absence of ITS spacer length variation is not correlated with levels of isozymic heterozygosity within populations. No detectable length variation within individuals or populations was seen in the larger intergenic spacer (IGS). Although populations varied with respect to IGS length, all individuals of a given population had a single and equivalent IGS length.  相似文献   

2.
We determined the genetic diversity of geographic populations from three spawning grounds (Nyang River, Lhasa River, Shetongmon Reach of Yarlung Zangbo River) of Glyptosternum maculatum with amplified fragment length polymorphism (AFLP) markers. Five primer combinations detected 332 products, 51 of them (15.4%) were polymorphic in at least one population. The Shetongmon population was found to be the richest in genetic diversity as was indicated by the percentage of polymorphic loci and heterozygosity, followed by the Nyang population and the Lhasa population. The pair-wise genetic distance between populations were all very close, ranging from 0.0015 to 0.0042 with an average of 0.0024. The genetic distance was not proportional to the geographic distance. The analysis of molecular variance demonstrated that all variation occurred within populations. The average estimated fixation index (F st) of three populations across all polymorphic loci was −0.0184, indicating the absence of genetic differences among the three sampled populations. The differentiation among populations was not significant, and population structure was weak. Our observations will help identify the genetic relationship among populations as the first approach to understand the genetic diversity of Glyptosternum maculatum.  相似文献   

3.
The structure of genetic variation in disjunct Scandinavian populations of Hippocrepis emerus was studied using allozymes and DNA fingerprinting. Variation in the three native regional populations in Scandinavia was compared with that in a recently introduced population in Sweden. In contrast to the recently introduced population, the native Scandinavian isolates of H. emerus showed high levels of allozyme fixation and low levels of DNA diversity. Variation in allozymes and at DNA fingerprint loci showed closely congruent patterns of geographic variation, with pronounced differentiation between the native Norwegian and Swedish isolates of the species. The structure of genetic variation in native Scandinavian H. emerus is interpreted in terms of historical population bottlenecks and founder events during the species' postglacial immigration into Scandinavia.  相似文献   

4.
Free-swimming Annelida occasionally occur in very high densities in WWTPs (WasteWater Treatment Plants) and are nowadays applied for waste sludge reduction, but their growth is uncontrollable. In order to get more insight in the population dynamics of these free-swimming Annelida, and relate their presence to process characteristics, nine ATs (Aeration Tanks) of four Dutch WWTPs were regularly sampled over a 2.5-year period. For each species, peak periods in worm population growth were defined and population doubling times and half-lives calculated. Peak periods and doubling times were compared to those in natural systems. Process characteristics were obtained from the plant operators and related to the worm populations by multivariate analysis for the first time in large-scale WWTPs. The species composition in the WWTPs was limited and the most abundant free-swimming Annelida were in decreasing order Nais spp., Aeolosoma hemprichi, Pristina aequiseta, Aeolosoma variegatum, Chaetogaster diastrophus, and Aeolosoma tenebrarum.This latter species had never been found before in WWTPs. Worm absence sometimes coincided with the presence of anoxic zones, but this was possibly overcome by higher temperatures in the WWTPs. Worms were present all year round, even in winter, but no yearly recurrences of population peaks were observed, probably as a result of stable food supply and temperature, and the lack of predation in the WWTPs. Peak periods were similar between the ATs of each WWTP. The duration of the peak periods was on average 2–3 months for each species and the population doubling times in the peak periods were short (on average 2–6 days), which also corresponds to a stable favorable environment. The disappearance of worm populations from the WWTPs was presumably caused by declining asexual reproduction and subsequent removal with the waste sludge. Multivariate analysis indicated that 36% of the variability in worm populations was due to spatial and temporal patterns only. In addition, no more than 4% of the variability in worm populations was related to variations in process characteristics only and worm presence was usually associated with better sludge settleability. In conclusion, our data from large-scale WWTPs suggest that growth of free-swimming Annelida still seems uncontrollable and that their effects on treatment processes are unclear, which makes stable application in wastewater treatment for sludge reduction difficult. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: K. Martens  相似文献   

5.
Effects of gamma-ray irradiation on the first-stage larvae of Angiostrongylus cantonensis were studied. There was a significant reduction in the infectivity of the 10,000 R-irradiated larvae to intermediate host snails compared to other groups. In the final host infection, both the worm populations and worm body length of irradiated groups differed markedly from those of the non-irradiated control.  相似文献   

6.
Mating among closely‐related individuals in small and isolated plant populations may result in reduced vigour of the inbred offspring, i.e. inbreeding depression, especially in naturally outbreeding plants. Occurrence of inbreeding and inbreeding depression was studied in Saintpaulia ionantha ssp. grotei, a threatened endemic plant species with a narrow ecological amplitude from the East Usambara Mountains. The level of inbreeding (measured as the fixation index, F) was investigated in twelve populations by analyzing variation at one microsatellite marker locus. The effect of one generation of selfing and outcrossing on the progeny fitness was studied by controlled crosses in two small patches that differ in the level isolation. The fixation index (F) across the populations was on the average 0.21 and varied among the populations from substantial inbreeding (F = 0.58) to surplus heterozygosity (F = −0.29). High inbreeding depression (δ) was observed at early and late stages of the life‐cycle. The isolated patch exhibited lower inbreeding depression than did the non‐isolated patch. The results of this study suggest that inbreeding and subsequent inbreeding depression are potential threats to the survival of Saintpaulia populations.  相似文献   

7.
The genetic variation between two allopatric populations ofBulnesia retama and that ofB. schickendantzii andB. foliosa was investigated. The Peruvian population ofB. retama showed low values of P (0.117) and He (0.057) compared to those in the Argentine population with P = 0.59 and He = 0.269;B. schickendantzii showed P = 0.54 andB. foliosa P = 0.17. Genetic identity between the latter was 0.836 and between the allopatric populations ofB. retama was 0.89; the Peruvian population had reduced allelic variation per locus (A = 1.176) in comparison to the Argentine population (A = 1.955). The values of A, P, He andWright's fixation indices suggest that the Peruvian population could have originated from a single or very few migrants from southern latitudes (founder effect).  相似文献   

8.
Ecogeographic variation in the widely dispersed but relatively neglected mangrove Kandelia candel is examined and described in the geographically isolated populations of this species from Brunei (North Borneo), Hong Kong and Thailand. Morphological attributes of leaf and propagules are compared together with some observations on differential chill tolerance in transplants from Brunei and Thailand growing alongside the wild populations of Hong Kong. Significant differences indicative of ecotypicity were obtained in terms of leaf length and size, propagule length, width and dry weight and chill tolerance of established four year old saplings.  相似文献   

9.
Microbiome communities are complex assemblages of bacteria. The dissection of their assembly dynamics is challenging because it requires repeated sampling of both host and source communities. We used the nematode Caenorhabditis elegans as a model to study these dynamics. We characterized microbiome variation from natural worm populations and their substrates for two consecutive years using 16S rDNA amplicon sequencing. We found conservation in microbiome composition across time at the genus, but not amplicon sequencing variant (ASV) level. Only three ASVs were consistently present across worm samples (Comamonas ASV10859, Pseudomonas ASV7162 and Cellvibrio ASV9073). ASVs were more diverse in worms from different rather than the same substrates, indicating an influence of the source community on microbiome assembly. Surprisingly, almost 50% of worm-associated ASVs were absent in corresponding substrates, potentially due to environmental filtering. Ecological network analysis revealed strong effects of bacteria–bacteria interactions on community composition: While a dominant Erwinia strain correlated with decreased alpha-diversity, predatory bacteria of the Bdellovibrio and like organisms associated with increased alpha-diversity. High alpha-diversity was further linked to high worm population growth, especially on species-poor substrates. Our results highlight that microbiomes are individually shaped and sensitive to dramatic community shifts in response to particular competitive species.  相似文献   

10.
A recently described PCR-based method for the analysis of intergenic spacer (IGS) length variation in the ribosomal (r) DNA of Drosophila melanogaster was used to analyse the distribution of IGS length variants in the rDNA of a number of recently collected D. melanogaster populations. One group of populations, from Europe and North Africa, was shown to have low intrapopulation IGS length variation following maintenance of massed populations in the laboratory for an extended period. However, a greater degree of IGS profile variability was detected at a number of levels in the majority of laboratory-maintained isofemale lines from two of these populations plus a second group of populations which were collected more recently from the eastern coast of Australia; all of which were immediately divided into isofemale lines following collection. Interestingly, PCR analysis of pooled DNA extracts from 30 individuals of either sex showed almost identical PCR profiles from each of the Australian populations. These preliminary results are discussed with regard to the possible combinations of forces (natural selection, neutral drift and genomic molecular drive) on the patterns of IGS length variation.  相似文献   

11.
To examine the genetic structure of Japanese scallop populations (Mizuhopecten yessoensis) in Hokkaido prefecture, Japan, and compare it with those in the Aomori prefecture, we applied a method for lineage analysis based on sequence variation in a mitochondrial DNA segment (NcR2). After showing that there was a low probability of doubly uniparental inheritance of mitochondrial DNA in the scallop, we sequenced the NcR2 regions of 914 individuals from 15 populations (13 in Hokkaido and 2 in Aomori). In total, 103 different haplotypes were detected. Results of homogeneity tests for pairwise populations and the fixation indices indicated that significant heterogeneity (P < 0.0005) and structuring (pairwise fixation index FST = 0.1606–0.4444, P = 0.0000; fixation index among groups FCT = 0.1549, P = 0.0078) could be inferred between the Hokkaido and Aomori groups, but not among populations within the groups. Moreover, heterogeneity of the haplotype distribution between populations of the 1980s and 1990s or 2000s at the 4 culturing areas was not observed (P > 0.05), and the haplotype diversity between them was not significant (P = 0.05), suggesting that the culture operations had not imparted a significant effect on the genetic structure during these periods.  相似文献   

12.
Clonal plant species have been shown to adopt different strategies to persist in heterogeneous environments by changing relative investments in sexual reproduction and clonal propagation. As a result, clonal diversity and genetic variation may be different along environmental gradients. We examined the regional and local population structure of the clonal rhizomatous forest herb Paris quadrifolia in a complex of forest fragments in Voeren (Belgium). Relationships between population size (the number of shoots), shoot density (the number of shoots per m2) and local growth conditions were investigated for 47 populations. Clonal diversity and genetic variation within and among 19 populations were investigated using amplified fragment length polymorphism markers. To assess the importance of sexual reproduction, seed set, seed weight and germination success were determined in 18 populations. As predicted, local growth conditions largely affected population distribution, size and density of P. quadrifolia. Populations occurring in moist and relatively productive sites contained significantly more shoots. Here, shoots were also much more sparsely distributed compared to populations occurring in dry and relatively unproductive sites, where shoots showed a strongly aggregated distribution pattern. Clonal diversity was relatively high, compared with other clonal species (G/N ratio = 0.43 and Simpson’s D=0.81). Clonal diversity significantly (P<0.01) decreased with increasing shoot density while molecular genetic variation was significantly (P<0.01) affected by population size and local environmental conditions. Lack of recruitment and out-competition of less-adapted genotypes may explain the decreased genetic variation in dry sites. Analysis of molecular variance revealed significant genetic variation among populations (Φ ST=0.42, P<0.001), whereas pairwise genetic distances were not correlated to geographic distances, suggesting that gene flow among populations is limited. Finally, the number of generative shoots, the number of seeds per fruit and seed weight were significantly and positively related to population size and local growth conditions. We conclude that under stressful conditions populations of clonal forest plant species can slowly evolve into remnant populations characterized by low levels of genetic variation and limited sexual reproduction. Conservation of suitable habitat conditions is therefore a prerequisite for effective long-term conservation of clonal forest plant species.  相似文献   

13.
Local genetic adaptation and phenotypic plasticity are two mechanisms that can have marked effects on the morphology, performance, and behaviour of animals, producing geographic variation among populations. However, few studies have examined how these mechanisms interact during ontogeny to shape organismal phenotypes. We incubated eggs of the western fence lizard, Sceloporus occidentalis, from four populations (representing two latitudes and altitudes) in either a warm or cool environment in the laboratory. We then raised the hatchlings under common laboratory conditions, measured morphological and performance traits until 5 weeks of age, and compared juvenile morphology with that of field‐caught adults from each population. The results obtained indicate that some phenotypic traits that contribute to performance (body size, hindlimb length, head shape) were relatively canalized in juveniles and differed among populations in a way that was consistent with adults from their population of origin. However, other traits (forelimb length, inter‐limb length, mass, tail length), showed significant effects of incubation temperature, and this environmentally induced variation persisted throughout the experiment. Although selection pressure may be stronger for traits that are integral to survival, developmental effects might still have a lasting impact on traits less important to organismal fitness. We discuss the results obtained in the present study the context of the life history of these animals. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 99 , 84–98.  相似文献   

14.
Allozymic variation in proteins encoded by 29 loci was analysed electrophoretically in 364 adult specimens representing 12 populations and five species of the landsnail Sphincterochila in Israel along a north-south general transect of increasing aridity. In addition, geographic variation in three morphological body variables of these snails was also studied. The results indicate that: (i) most loci (86%) are strongly polymorphic; (ii) most loci (65%) display fixation of alternative alleles either within or between species; (iii) most of the variant alleles (51%) are not widespread, and genie differentiation is very high (66%) between populations and species, indicating sharp local and regional geographic differentiation; (iv) clinal patterns are rare or nonexistent; (v) populations of Sphincterochila display average estimates of mean alleles per locus,A=1.53; polymorphism, P (5% criterion) = 0.31; heterozygosity, H=0.07; and genie diversity, He= 0.11; (vi) wide geographic variation within and between species is displayed in A= 1.18-2.07; P=0.11–0.61; H=0.02-0.15, and He = 0.042-0.22. Wright's fixation index, F, ranges from 0.03 to 0.65. (vii) Genie diversity, He, increases southwards with aridity from 0.051 to 0.145. (viii) A differential amount of variation in different functional classes of enzymes follows the Gillespie-Kojima hypothesis, (ix) Coefficients of genetic distance, D, between populations are high, D= 0.34, range 0.09-0.58, and between species, D= 0.27, range 0.12-0.40. D's within species may be higher than between species. Likewise, D's increase clinally southwards, (x) Deviations from Hardy-Weinberg equilibria were found in several loci in some populations and species, (xi) A statistically significant (P< 0.001) amount of morphological variation of body variables exists within and between species. Size between three species increases eastwards and southwards with aridity, (xii) P, H, He, and allozymic variation in several gene loci are significantly correlated with, and predictable by, climatic variables, primarily those related to the moisture index, (xiii) Allozymic and morphological variations are partly correlated, (xiv) Significant microgeographical climatic differentiation was found in three critical tests. The pattern of genetic variation within and between species suggests that: (a) climatic selection plays a conspicuous role in allozymic morphological differentiation into ecologically adaptive patterns; (b) the environmental variation model seems to be a good predictor of genetic variation in Sphincterochila; (c) adaptive radiation of the five species of Sphincterochila in Israel occurred during Pleistocene times in accord with climatic differentiation and apparently involved few changes of structural genes.  相似文献   

15.
1. The genetic variation of the endangered freshwater fish Ladigesocypris ghigii, endemic to the island of Rhodes (Greece), was investigated for nine populations, originating from seven different stream systems and a reservoir, both at the mtDNA and nuclear level, in order to suggest conservation actions. 2. Both restriction fragment length polymorphism analysis of five segments of mitochondrial DNA (ND‐5/6, COI and 12S‐16S rRNA) amplified by polymerase chain reaction, and random amplified polymorphic DNA analysis, revealed extremely low levels of intra‐population polymorphism. It is highly likely that the low intra‐population variability is the result of successive bottleneck events evident in shrinkage and expansion of the populations year after year, which may have led to a complete loss of several genotypes and haplotypes, and an increased degree of inbreeding. 3. Inter‐population genetic structuring was high, with fixation of haplotypes within six of the nine populations and fixation of alleles within populations originating from different waterbodies. It is probable that all haplotypes and/or alleles found were initially represented in all populations. However, because of the long time of isolation coupled with successive bottleneck and subsequent genetic drift, common mtDNA haplotypes and alleles among the populations may have become rare or extinct through stochastic lineage loss. 4. Although nucleotide divergence among haplotypes was very shallow, half of the haplotypes recorded (three of six), resulted from nucleotide changes on the 12S–16S rRNA segments, which are the most conserved part of the mitochondrial genome. This fact may indicate that the observed genetic variation did not necessarily result only from the retention of ancestral polymorphism, but may have arisen through mutation and complete lineage sorting over a relatively small number of generations, once the populations had become isolated from one another. 5. Our data suggest that two of the L. ghigii populations may be on independent evolutionary trajectories. Considering that each population appears so far well adapted within each site, all populations should be managed and conserved separately.  相似文献   

16.
Aim To characterize the genetic structure and diversity of Pinus cembra L. populations native to two disjunct geographical areas, the Alps and the Carpathians, and to evaluate the rate of genetic differentiation among populations. Location The Swiss Alps and the Carpathians. Methods We screened 28 populations at three paternally inherited chloroplast simple sequence repeats (cpSSRs) for length variation in their mononucleotide repeats. Statistical analysis assessed haplotypic variation and fixation indices. Hierarchical analysis of molecular variance (AMOVA), Mantel test, spatial analysis of molecular variance (SAMOVA) and barrier analyses were applied to evaluate the geographical partitioning of genetic diversity across the species’ range. Results Haplotypic diversity was generally high throughout the natural range of P. cembra, with the mean value substantially higher in the Carpathians (H = 0.53) than in the Alps (H = 0.35). The isolated Carpathian populations showed the highest haplotype diversity among the populations originating from the High Tatras (Velka Studena Dolina) and South Carpathians (Retezat Mountains). AMOVA revealed that only 3% of the total genetic variation derived from genetic differentiation between the two mountain ranges. Differentiation among Carpathian populations was higher (FST = 0.19) than among Alpine populations (FST = 0.04). Low, but significant, correlation was found between the geographical and genetic distances among pairs of populations (r = 0.286, P < 0.001). SAMOVA results revealed no evident geographical structure of populations. barrier analysis showed the strongest differentiation in the eastern part of the species’ range, i.e. in the Carpathians. Main conclusions The populations of P. cembra within the two parts of the species’ range still share many cpDNA haplotypes, suggesting a common gene pool conserved from a previously large, continuous distribution range. Carpathian populations have maintained high haplotypic variation, even higher than Alpine populations, despite their small population sizes and spatial isolation. Based on our results, we emphasize the importance of the Carpathian populations of Swiss stone pine for conservation. These populations comprise private haplotypes and they may represent a particular legacy of the species’ evolutionary history.  相似文献   

17.
To understand the biology of organisms it is important to take into account the evolutionary forces that have acted on their constituent populations. Neutral genetic variation is often assumed to reflect variation in quantitative traits under selection, though with even low neutral divergence there can be substantial differentiation in quantitative genetic variation associated with locally adapted phenotypes. To study the relative roles of natural selection and genetic drift in shaping phenotypic variation, the levels of quantitative divergence based on phenotypes (PST) and neutral genetic divergence (FST) can be compared. Such a comparison was made between 10 populations of Finnish House Sparrows (= 238 individuals) collected in 2009 across the whole country. Phenotypic variation in tarsus‐length, wing‐length, bill‐depth, bill‐length and body mass were considered and 13 polymorphic microsatellite loci were analysed to quantify neutral genetic variation. Calculations of PST were based on Markov‐Chain Monte Carlo Bayesian estimates of phenotypic variances across and within populations. The robustness of the conclusions of the PSTFST comparison was evaluated by varying the proportion of variation due to additive genetic effects within and across populations. Our results suggest that body mass is under directional selection, whereas the divergence in other traits does not differ from neutral expectations. These findings suggest candidate traits for considering gene‐based studies of local adaptation. The recognition of locally adapted populations may be of value in the conservation of this declining species.  相似文献   

18.
Lambs show considerable genetic variation in faecal egg count following natural, predominantly Ostertagia circumcinta infection. This genetic variation is acquired and not innate. Worm length is positively associated with worm fecundity. The genetic variation in faecal egg count is a consequence of genetic variation in worm length and hence worm fecundity, and not of genetic variation in worm burdens. In contrast to lambs, mature sheep may be able to regulate both fecundity and worm numbers. In lambs, three factors account for the majority of the variation in worm length: the strength of the local IgA response against fourth-stage larvae, the specificity of this response against four molecules in particular, and the density-dependent influence of worm number.  相似文献   

19.
This study examined sexual dimorphism of head morphology in the ecologically diverse three‐spined stickleback Gasterosteus aculeatus. Male G. aculeatus had longer heads than female G. aculeatus in all 10 anadromous, stream and lake populations examined, and head length growth rates were significantly higher in males in half of the populations sampled, indicating that differences in head size increased with body size in many populations. Despite consistently larger heads in males, there was significant variation in size‐adjusted head length among populations, suggesting that the relationship between head length and body length was flexible. Inter‐population differences in head length were correlated between sexes, thus population‐level factors influenced head length in both sexes despite the sexual dimorphism present. Head shape variation between lake and anadromous populations was greater than that between sexes. The common divergence in head shape between sexes across populations was about twice as important as the sexual dimorphism unique to each population. Finally, much of the sexual dimorphism in head length was due to divergence in the anterior region of the head, where the primary trophic structures were found. It is unclear whether the sexual dimorphism was due to natural selection for niche divergence between sexes or sexual selection. This study improves knowledge of the magnitude, growth rate divergence, inter‐population variation and location of sexual dimorphism in G. aculeatus head morphology.  相似文献   

20.
Synopsis A comparison of a suite of morphometric measurements and meristic counts of individuals of two landlocked lacustrine and two diadromous riverine populations of Galaxias truttaceus was carried out utilising both univariate and canonical variate analyses. Lacustrine fish had fewer dorsal and anal fin rays than did riverine fish. Differences were not as clear for gill rakers and vertebrae. Comparisons of serial counts were made with two derived lacustrine species, G. auratus and G. tanycephalus, also from Tasmania. Lacustrine G. truttaceus varied in the same direction as the derived species, relative to riverine G. truttaceus. From an analysis of 12 body measurements, the first canonical variate clearly separated lacustrine fish from riverine fish largely based on measurements associated with fins (pre-anal fin length, length of anal base, pre-dorsal fin length, maximum length of dorsal fin and inter-orbital width). An overall value for the correct classification of fish into groups based on locality was 84%. The percentage of fish classified into the wrong habitat (lake or stream) was much less than the percentage classified between localities within habitats. Overall morphological variation was greater between than within habitats. It is suggested that the differences in water movement and food type may in part account for the differences shown and that selective pressures peculiar to the lacustrine environment may be causing the lake populations to diverge from the riverine populations.  相似文献   

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