Origin and genetic diversity of Western European populations of the potato cyst nematode (Globodera pallida) inferred from mitochondrial sequences and microsatellite loci

Native to South America, the potato cyst nematode Globodera pallida is one of the principal pests of Andean potato crops and is also an important global pest following its introduction to Europe, Africa, North America, Asia and Oceania. Building on earlier work showing a clear south to north phylogeographic pattern in Peruvian populations, we have been able to identify the origin of Western European populations with high accuracy. They are all derived from a single restricted area in the extreme south of Peru, located between the north shore of the Lake Titicaca and Cusco. Only four cytochrome b haplotypes are found in Western Europe, one of them being also found in some populations of this area of southern Peru. The allelic richness at seven microsatellite loci observed in the Western European populations, although only one-third of that observed in this part of southern Peru, is comparable to the allelic richness observed in the northern region of Peru. This result could be explained by the fact that most of the genetic variability observed at the scale of a field or even of a region is already observed at the scale of a single plant within a field. Thus, even introduction via a single infected potato plant could result in the relatively high genetic variability observed in Western Europe. This finding has important consequences for the control of this pest and the development of quarantine measures.     

Studies in the lichen family Collemataceae V. Notes on some interesting Collema species

The new Collema flagellatum Degel. from Peru is described. Collema furfureolum Müll. Arg. is recorded as new to Europe (Italy, Greece). Phytogeographically interesting finds of various taxa of Collema , from extra-European areas, are published.     

Crown dimensions of deciduous teeth from pre-Columbian Peru

The mean mesiodistal and buccolingual diameters are presented for the deciduous teeth from Pre-Columbian Peru. Generally, the deciduous teeth from Pre-Columbian Peru are larger in most dimensions than the deciduous teeth of modern populations of European descent and smaller than those of modern Australian aboriginals. Differences in crown dimensions between the Pre-Columbian Peruvian deciduous teeth and those from Prehistoric Inamgaon and Mesolithic Europe are inconsistent. However, the maxillary and mandibular second molars are larger in the Peruvian population while the incisors are smaller. Since comparative data for prehistoric deciduous teeth are rare, this paper adds valuable data to the growing literature on deciduous crown dimensions.     

Otolith features and growth of Malawian characid Hemigrammopetersius barnardi from the southwestern coast of Lake Malawi

Macro- and microstructures of the sagitta, asteriscus, and lapillus of juveniles of Malawian characid Hemigrammopetersius barnardi were observed. The sagittae were arrowhead shaped and showed development of rostra. Increments in the sagitta were observable until the bases of the rostra but were invisible in the rostra. The asteriscus had an irregular shape with an ambiguous core and notches at the margin. The ambiguous core of the asteriscus led to difficulty in discerning the first increment. The lapilli were round and fan shaped. Increments in the lapilli were distinct from the core to the margin. The daily increment deposition was validated by alizarin complexone treatment, and the increments increased at the rate of 1 day⁻¹ after hatching. These features suggested that in this species the lapillus is most appropriate for daily increment analysis. The hatching months were estimated based on the lapillus increment counts, and the results showed that this species continuously hatched in the rainy season for 6 months from November to April. The growth trajectory indicated that H. barnardi attains a total length of 50 mm within 4 months of hatching.     

The species of Hemigrapha (lichenicolous Ascomycetes, Dothideales) on Peltigerales

The species of Hemigrapha (lichenicolous Ascomycetes, Dothideales) growing on Peltigerales are revised. H. atlantica sp. nov., on the cyanobacterial morph of Sticta canariensis from the Azores and the British Isles, H. nephromatis sp. nov., on Nephroma australe from Tasmania and New Zealand, and H. pseudocyphellariae sp. nov., on Pseudocyphellaria from Papua New Guinea are described and compared with the type species, H. asteriscus , which grows on species of Peltigera in the southern hemisphere and in Europe. Hemigrapha is shown to belong to the Microthyriaceae (Dothideales). Pycnothyrial anamorphs, morphologically identical to the thyriothecia, with hyaline, non-septate microconidia andor macroconidia, and conidiogenous cells arising from the upper conidiomatal wall, are known in H. asteriscus, H. atlantica and H. pseudocyphellariae. A key is given for the species of Hemigrapha on Peltigerales.     

Cryptic speciation, habitat differentiation, and geography in Hamatocaulis vernicosus (Calliergonaceae, Bryophyta)

A molecular study of the wetland pleurocarpous moss Hamatocaulis vernicosus (Mitt.) Hedenäs, based on the ITS region, the trnL-trnF region, and rpl16 revealed two cryptic species. One of these is widespread in Europe, and was also sampled from several localities in Minnesota (United States). The other cryptic species occurs only south of the boreal zone in Europe, and was in addition sampled from single localities in Peru and northernmost Asiatic Russian Federation. Although it seems likely that the southern species colonized parts of Europe from southern refugia after the last glaciation, its wide distribution outside Europe indicates that the speciation event is unrelated to the European glacial history. No correlations could be found between variation in habitat preferences (pH and electric conductivity) and molecular variation.     

西藏双须叶须鱼八种年龄鉴定材料的比较研究

用微耳石、星耳石、脊椎骨、鳃盖骨、臀鳞、胸鳞、侧线鳞和背鳞等8种年龄鉴定材料识别和鉴定西藏双须叶须鱼的年龄特征并进行比较分析, 以确定适宜的年龄鉴定材料。结果显示: 臀鳞形态特化严重, 胸鳞、侧线鳞、背鳞的年轮特征不明显, 与微耳石比较的平均百分比误差(IAPE)分别为41.63%、51.26%、50.50%和51.26%, 其他4种年龄材料与微耳石比较的IAPE相差不大, 依次为: 星耳石(12.28%)、脊椎骨(15.67%)、鳃盖骨(17.81%); 低于23龄时, 微耳石鉴定的平均年龄与耳石和脊椎骨鉴定的平均年龄较为接近(P>0.05), 分别为14.39龄、13.13龄和13.20龄, 显著高于鳃盖骨和4种鳞片(P<0.05); 高于23龄时, 7种年龄鉴定材料都显著低于微耳石所鉴定的平均年龄(P<0.05)。用微耳石鉴定所得的最大年龄为49龄, 星耳石鉴定所得的最大年龄为35龄, 脊椎骨鉴定所得最大年龄为34龄, 鳃盖骨为34龄, 臀鳞为22龄, 胸鳞为19龄, 侧线鳞为16龄, 背鳞为17龄。微耳石年龄鉴定的年龄读数与体长呈极显著的对数函数关系(P<0.01)。综合分析认为, 微耳石最适宜作为双须叶须鱼的年龄鉴定材料。     

Presence of methicillin-resistant Staphylococcus aureus in pigs in Peru

We report the first detection of methicillin-resistant Staphylococcus aureus isolates in pigs in Peru. The isolates belong to a livestock-associated lineage previously reported in North America and Europe, CC398, and a highly virulent USA300-like ST8-IV variant, which is the predominant community-associated lineage in Latin America.     

Precision of Age Estimates Obtained from Five Calcified Structure for Wels Catfish,Silurus glanis

Journal of Ichthyology - In this study, vertebrae, otoliths (asteriscus and lapillus), sectioned lapillus and pectoral fin rays were evaluated for age determination of Silurus glanis L., 1758...     

鲫幼鱼耳石荧光标记效果

为确认茜素络合物对鲫（Carassius auratus）耳石进行有效标记的可行性,以便为鲫甚至其他鲤科鱼类标志放流技术的开发及效果评估提供一定的借鉴,本研究以孵出后90 d的鲫幼鱼为研究对象,设置单一浓度（100 mg/L）的茜素络合物浸泡标记5 d,分析茜素络合物在耳石上的沉积情况以及不同耳石在不同后续饲养天数的动态变化。结果表明,矢耳石、微耳石和星耳石上在可见光、绿色和蓝色激发光下都检测到了良好的茜素络合物标记环,标记率和存活率均为100%。但不同耳石的茜素络合物标记效果不同,荧光下,星耳石的标记效果最显著,微耳石次之;可见光下,微耳石的标记效果最好,星耳石次之。随着后续饲养天数的延长,可见光下标记逐渐减弱,至20 d时基本消失,而在绿色和蓝色激光下标记环荧光强度无减弱迹象,能长久保持,且在蓝色激发光下标记环更易被观测到。上述结果结合鲫生长、存活和行为正常等情况综合显示,在100 mg/L茜素络合物溶液中浸泡标记鲫幼鱼5 d,其耳石可以获得满意的标记效果。     

Otolith Morphology of Amur Sleeper Perccottus glenii (Odontobutidae)

Journal of Ichthyology - Morphology of the sagitta, lapillus, and asteriscus is described in Amur sleeper Perccottus glenii, 19–245 mm TL. The sagitta is characterized by an almost quadratic...     

Otolith development and daily increment formation in larvae of the Kabyabya,a Malawian cyprinid, <Emphasis Type="Italic">Opsaridium tweddleorum</Emphasis>

Features of the sagitta, asteriscus, and lapillus of laboratory-hatched larvae of the Kabyabya, Opsaridium tweddleorum, were investigated until day 33 after hatching. The sagitta was round until day 17, subsequently becoming arrowhead-shaped with the development of anterior and posterior rostra. Increments in the sagitta increased at the rate of one per day before rostrum formation. However, they were occasionally overestimated in rostrum sections as a result of subdaily increment occurrence. Furthermore, both anterior and posterior rostra were fragile, being thin and platelike, and were often damaged during the extraction and grinding processes. The lapillus was also round until day 17, thereafter becoming fan-shaped. Increments in the lapillus were distinctive from the core to the margin, usually increasing at the rate of one per day after hatching. The asteriscus appeared in fish larger than 9.15 mm in standard length (from day 17), being oval with a somewhat ambiguous core, causing difficulty in discerning the first increment. These features indicated that the lapillus was the most appropriate otolith part for daily increment analysis in this species, although the sagitta was useful before rostrum formation.     

Natural Occurrence of Pepino mosaic virus in Lycopersicon Species in Central and Southern Peru

Pepino mosaic virus (PepMV), a potexvirus first described in 1980 from pepino ( Solanum muricatum ) plants cultivated in Peru, was isolated from diseased tomato plants in the Netherlands in 1999, and is now the cause of an emerging tomato disease in Europe. In a survey of central and southern Peru, 65 wild and four cultivated populations of Lycopersicon , as well as six populations of other species of Solanaceae , were tested for the presence of PepMV and six other viruses. Of the Lycopersicon population sampled, 23 (35.4%) reacted positively in double antibody sandwich (DAS)-enzyme-linked immunosorbent assay (ELISA) with antisera to PepMV. DAS-ELISA tests for PepMV of other solanaceous species were negative, except for one sample of pepino ( Solanum muricatum ). Mechanical inoculation of susceptible Lycopersicon esculentum cv. NE-1 plants with crude sap extracts of 20 of these samples confirmed that 15 of them (from the Departments of Apurimac, Arequipa and Moquegua) were infected with PepMV; these inoculated plants were also DAS-ELISA positive and, in most cases, developed symptoms. Thirteen of the infective extracts were obtained from plants of wild Lycopersicon species (three L. chilense , three L. chmielewskii , two L. parviflorum and five L. peruvianum ) and one each from the cultivated species L. esculentum and S. muricatum . The wild Lycopersicon species are newly reported natural hosts of PepMV. Tests for the other six viruses were negative, except that two samples contained Tomato mosaic virus . Thus, PepMV occurs in Lycopersicon species in central and southern Peru, even in isolated wild populations. These results indicate that the virus is not new to the region and has an efficient mechanism of natural transmission.     

Preliminary examination on lapillus utility for otolith increment analysis in Malawian cyprinid <Emphasis Type="Italic">Engraulicypris sardella</Emphasis>

Features and increments of otoliths in Engraulicypris sardella were observed. The sagitta was arrowhead shaped with an obvious core and rostra, the latter being fragile and easily destroyed by extracting and grinding processes. Increments around the core were readable but not in rostra. The lapillus was round fan-shaped with an obvious core. Increments in the lapillus were clearly deposited from the core to the margin. The asteriscus had an ambiguous core that led to difficulty in discerning the first increment and had fewer increments than the lapilli. Thus, the lapillus is the most appropriate for reading otolith increments.     

Molecular and pathobiological characterization of 61 Potato mop‐top virus full‐length cDNAs reveals great variability of the virus in the centre of potato domestication,novel genotypes and evidence for recombination

The evolutionary divergence of Potato mop‐top virus (PMTV), a tri‐partite, single‐stranded RNA virus, is exceptionally low, based on the analysis of sequences obtained from isolates from Europe, Asia and North America. In general, RNA viruses exist as dynamic populations of closely related and recombinant genomes that are subjected to continuous genetic variation. The reason behind the low genetic variation of PMTV remains unclear. The question remains as to whether the low variability is a shared property of all PMTV isolates or is a result of the limited number of isolates characterized so far. We hypothesized that higher divergence of the virus might exist in the Andean regions of South America, the centre of potato domestication. Here, we report high variability of PMTV isolates collected from 12 fields in three locations in the Andean region of Peru. To evaluate PMTV genetic variation in Peru, we generated full‐length cDNA clones, which allowed reliable comparative molecular and pathobiological characterization of individual isolates. We found significant divergence of the CP‐RT and 8K sequences. The 8K cistron, which encodes a viral suppressor of RNA silencing, was found to be under diversifying selection. Phylogenetic analysis determined that, based on the CP‐RT sequence, all PMTV isolates could be categorized into three separate lineages (clades). Moreover, we found evidence for recombination between two clades. Using infectious cDNA clones of the representatives of these two clades, as well as reassortants for the RNA‐CP genomic component, we determined the pathobiological differences between the lineages, which we coined as S (for severe) and M (for mild) types. Interestingly, all isolates characterized previously (from Europe, Asia and North America) fall into the S‐type clade, whereas most of the Peruvian isolates belong to the M‐type. Taken together, our results support the notion of the single introduction of PMTV from the centre of potato origin to Europe, and subsequent spread of the S‐type into Asia and USA. This is also supported by the suggested novel classification of isolates based on genetic constellations.     

Use of ecological methods in ethnobotany: Diversity indices

The application of ecological concepts to ethnobotanical studies, in particular of diversity, is analyzed. Diversity indices are important tools that may help in understanding human-environment interactions. Those indices allow comparisons on the use of plants by different populations in different environments. A review on recent major ethnobotanical journals was carried out, and 10 studies (7 from Latin America, 2 from Asia and 1 from Europe) were selected based on available data to calculate diversity indices. The Shannon-Wiener indices and rarefaction curves were obtained. High diversity on plant uses were found for studies carried out at Peru, Mexico, Brazil and Thailand. A low diversity was found for Tonga, and island biogeography theory is used to discuss these results. Sampling effort is evaluated through rarefaction curves. The estimation of the diversity of resources used by native populations may be useful when planning conservation areas and their management.     

Comparison of erythrocyte markers gene frequencies in different populations

A comparison of erythrocyte markers (ABO, Rh system) gene frequencies was done by bar code diagrams in populations of variable ethnic origin. The results from missions for the development in Far East Asia (China, Indochina, New Guinea) were compared to well known gene frequencies of the populations living in other regions: inhabitants of the islands of the Pacific ocean, Europeans of New Zealand and Western Europe (France), Europeans of North America, Ameridans of Peru and Bolivia, Somalians of Africa. Polymorphism was observed in immense country very peopled, monomorphism was found in small and isolated region but polymorphism existed in tribes living in very isolated islands.     

Seroprevalence of Toxoplasma gondii in swine from slaughterhouses in Lima, Peru, and Georgia, U.S.A

Toxoplasma gondii is an important pathogen transmitted by food, with raw or undercooked meat as the main foodborne source of toxoplasmosis. In Peru, 2-4 million people have antibodies to T. gondii. It is believed that more than 60 million people in the United States are infected with T. gondii. In this study, the prevalence of T. gondii in pigs from Peru and the United States was determined by Western blot. The presence of IgG antibodies to T. gondii from serum samples was determined. Blood samples were collected from 137 pigs at a slaughterhouse in Lima, Peru, and 152 pigs at a slaughterhouse in Georgia. Of the serum samples collected from swine, 27.7% (n = 38) from Peru and 16.4% (n = 25) from the United States were positive for T. gondii. Swine represent a significant source of human infection with T. gondii in Peru and the United States.     

齐口裂腹鱼耳石早期生长发育与日轮特征研究

文章研究了在实验室条件下齐口裂腹鱼仔稚鱼耳石早期形态发育与生长特点、第一轮纹出现时间和轮纹沉积规律。结果表明: 在13.5-17.2℃孵化条件下,微耳石和矢耳石在出膜前形成,而星耳石于出膜后第12天出现。在仔稚鱼生长过程中,微耳石由近圆形发育成贻贝形,矢耳石经历近圆形、锲形后发育为箭矢状,星耳石形状由近圆形发育为星芒状。微耳石的前区、背区和腹区及矢耳石的背区和腹区生长呈幂函数关系,而微耳石的后区、矢耳石前区和后区生长以及两对耳石的前后区半径之和与全长均呈线性相关。在(18.50.5)℃和(15.61.1)℃条件下,50%矢耳石样本第一轮纹均在出膜后第 2 天形成(分别为出膜后18h和19h),以后每天形成一轮。微耳石和矢耳石轮纹数均与日龄呈线性相关,方程斜率均与1差异不显著(P0.05),表明两对耳石的轮纹沉积均为日周期性。这些结果为研究齐口裂腹鱼野生种群繁殖期和早期生活史特征等生态学问题提供了重要依据。     

Molecular characterization and phylogenetic analysis of Fasciola hepatica from Peru

The causative agent of fasciolosis in South America is thought to be Fasciola hepatica. In this study, Fasciola flukes from Peru were analyzed to investigate their genetic structure and phylogenetic relationships with those from other countries. Fasciola flukes were collected from the three definitive host species: cattle, sheep, and pigs. They were identified as F. hepatica because mature sperms were observed in their seminal vesicles, and also they displayed Fh type, which has an identical fragment pattern to F. hepatica in the nuclear internal transcribed spacer 1. Eight haplotypes were obtained from the mitochondrial NADH dehydrogenase subunit 1 (nad1) sequences of Peruvian F. hepatica; however, no special difference in genetic structure was observed between the three host species. Its extremely low genetic diversity suggests that the Peruvian population was introduced from other regions. Nad1 haplotypes identical to those of Peruvian F. hepatica were detected in China, Uruguay, Italy, Iran, and Australia. Our results indicate that F. hepatica rapidly expanded its range due to human migration. Future studies are required to elucidate dispersal route of F. hepatica from Europe, its probable origin, to other areas, including Peru.