THE ROLE OF INBREEDING DEPRESSION AND MATING SYSTEM IN THE EVOLUTION OF HETEROSTYLY

We investigated the role of morph‐based differences in the expression of inbreeding depression in loss of the mid‐styled morph from populations of tristylous Oxalis alpina. The extent of self‐compatibility (SC) of reproductive morphs, the degree of self‐fertilization, and the magnitude of inbreeding depression were investigated in three populations of O. alpina differing in their tristylous incompatibility relationships. All three populations exhibited significant inbreeding depression. In two populations with highly modified tristylous incompatibility, manifested as increased reciprocal compatibility between short‐ and long‐styled morphs, substantial SC and self‐fertilization of mid‐styled morphs were detected, and expected to result in expression of inbreeding depression in the progeny of mid‐styled morphs in the natural populations. In contrast, significant self‐fertility of the mid‐styled morph was absent from the population with typical tristylous incompatibility, and no self‐fertilization could be detected. Although self‐fertilization and expression of inbreeding depression should result in selection against the mid‐styled morph in the later stages of the transition from tristyly to distyly, in O. alpina selection against the mid‐styled morph in the early phases of the evolution of distyly is likely due to genic selection against mid‐alleles associated with modified tristylous incompatibility, rather than expression of inbreeding depression.     

Changes in mortality patterns and temperature dependence of lifespan in Drosophila melanogaster caused by inbreeding

After an inbreeding event, lifespan can be curtailed through the expression of deleterious alleles. This will impact on both mortality patterns and interactions with the environment as visualised in reaction norms. We have established the effects of inbreeding on the temperature dependence of lifespan and on mortality patterns in Drosophila melanogaster. Four inbred lines displaying severely decreased lifespan and five outbred controls were assessed for male adult survival at three temperatures. As expected, all inbred lines showed a shorter lifespan than noninbred lines. The mechanisms behind this, however, appeared to be very diverse. Two inbred lines showed a significantly decreased temperature dependence of lifespan compared to the control lines. Analysis of variance on the mortality parameters over all lines showed that inbreeding changes the age-independent mortality but not the age-dependent mortality, whereas temperature does the opposite. This suggests that gene-by-environment interaction caused by inbreeding is the result of changes in the processes of lifespan determination. Importantly, for the two other inbred lines, a particular temperature regime triggered the expression of conditional lethal alleles. Mortality was concentrated in short lethal phases early in adult life. These conditionally expressed lethal alleles affecting lifespan demonstrate line specificity for inbreeding depression and will help ageing studies as such alleles may serve as candidate genes for ageing processes and age-related pathologies in humans.     

Limited inbreeding depression in a bottlenecked population is age but not environment dependent

Inbreeding depression is known to vary greatly between populations and among species. Some of this variation is due to differences in genetic load between populations, while some is due to differences in the environment (e.g. local weather conditions) or demography of the population (e.g. age structure and breeding experience) in which inbreeding is expressed. Although the effects of these factors in isolation are well understood, there is still relatively little known about the interface between inbreeding on one hand, and environment and demography on the other in wild populations. We examined how environmental and demographic factors mediated the effects of inbreeding in a threatened species of bird. The Stewart Island robin, Petroica australis rakiura, has been subjected to a prolonged bottleneck for over 150 years. A complete pedigree of a reintroduced island population, extending back seven seasons to its founding, was available for analysis along with survival data (at the level of the brood) obtained from intensive monitoring over two breeding seasons. We found no strong support that the degree to which a brood was inbred affected its survival at either the hatching, fledging or recruitment stages. The inbreeding coefficient of the mother did have an effect on brood survival when analysed over all three life history stages, but only as a result of an interaction with female age, with broods of one‐year‐old inbred females suffering greater mortality than those of older inbred females. Although habitat type, temperature, rainfall and year were the best predictors of brood survival for most life history stages, their effects were weak and there were no interactions with inbreeding. Furthermore, there was no strong evidence of inbreeding depression associated with two periods of severe weather. This population is atypical in that inbreeding depression appears to be weak even under severe environmental conditions, and may be indicative that this bottlenecked population has either reduced genetic load or has fixed deleterious alleles.     

Does inbreeding distort sex-ratios?

Inbreeding is reputed to distort sex-ratios by reducing the proportion of the homogametic sex. However, many data sets do not show such an effect, and there is a known selective publication bias. To resolve the issue, we (a) developed detailed theoretical expectations for the effects of inbreeding on sex-ratios for autosomal and sex-linked loci with sex-limited effects or with equal effects in the two sexes, (b) evaluated the effects of inbreeding on sex-ratios in a new sample of 25 vertebrate taxa, and (c) evaluated the effects of inbreeding on sex-ratios for 69 replicate populations of Drosophila melanogaster. Theoretical analyses indicated that directional distortions of sex-ratios under inbreeding due to sex-linked loci with sex-limited expression are expected to be small and uncommon and that there will be no distortions in marsupials. Further, sex linked alleles expressed equally in both sexes may also distort sex-ratios following inbreeding. Autosomal sex-limited alleles should not result in directional sex-ratio distortions in large populations or across many replicates, but may lead to distortions of random direction in some small populations. There were no significant directional distortions of sex-ratio due to inbreeding in either the vertebrates or the Drosophila populations. However, there were significant random distortions of sex-ratios in both data sets, presumably from autosomal sex-limited alleles that had drifted in individual populations. Thus, directional distortions in sex-ratio are not a consistent signal of inbreeding depression.     

Sorting out the effects of Wolbachia, genotype and inbreeding on life-history traits of a spider mite

Wolbachia bacteria manipulate host reproduction by inducing cytoplasmic incompatibility (CI) and sex ratio distortion. Wolbachia are transmitted from mother to offspring through the cytoplasm of the egg. Therefore, reproduction of Wolbachia is tightly coupled to reproduction of its host. Mathematical analysis predicts that in the course of evolution, traits that reduce the physiological costs of the infection will be selectively favored. For a Wolbachia-host system to evolve, traits under selection must have some genetic component and variation must be present in the population. We have previously established that highly inbred isofemale lines of the two-spotted spider mite Tetranychus urticae may differ regarding the effects of infection by Wolbachia, and that at least some of the traits affected had a genetic component. However, the effects measured could have been affected by the fact that the lines were severely inbred prior to the experiments. In this paper we attempt to distinguish between the effects of Wolbachia, isofemale line, and inbreeding. We show that Wolbachia did not affect longevity but infected females produced smaller clutch sizes, more daughter-biased sex ratios and had decreased F1 mortality; between-line variation was found for clutch size, F1 mortality and sex ratio; finally, inbreeding resulted in an overall reduction of clutch sizes, and a change in survival curves and mean longevity. This revised version was published online in July 2006 with corrections to the Cover Date.     

Relatively weak inbreeding depression in selfing but also in outcrossing populations of North American Arabidopsis lyrata

Hermaphroditic plants can potentially self‐fertilize, but most possess adaptations that promote outcrossing. However, evolutionary transitions to higher selfing rates are frequent. Selfing comes with a transmission advantage over outcrossing, but self‐progeny may suffer from inbreeding depression, which forms the main barrier to the evolution of higher selfing rates. Here, we assessed inbreeding depression in the North American herb Arabidopsis lyrata, which is normally self‐incompatible, with a low frequency of self‐compatible plants. However, a few populations have become fixed for self‐compatibility and have high selfing rates. Under greenhouse conditions, we estimated mean inbreeding depression per seed (based on cumulative vegetative performance calculated as the product of germination, survival and aboveground biomass) to be 0.34 for six outcrossing populations, and 0.26 for five selfing populations. Exposing plants to drought and inducing defences with jasmonic acid did not magnify these estimates. For outcrossing populations, however, inbreeding depression per seed may underestimate true levels of inbreeding depression, because self‐incompatible plants showed strong reductions in seed set after (enforced) selfing. Inbreeding‐depression estimates incorporating seed set averaged 0.63 for outcrossing populations (compared to 0.30 for selfing populations). However, this is likely an overestimate because exposing plants to 5% CO₂ to circumvent self‐incompatibility to produce selfed seed might leave residual effects of self‐incompatibility that contribute to reduced seed set. Nevertheless, our estimates of inbreeding depression were clearly lower than previous estimates based on the same performance traits in outcrossing European populations of A. lyrata, which may help explain why selfing could evolve in North American A. lyrata.     

Life history mediates mate limitation and population viability in self‐incompatible plant species

Genetically controlled self‐incompatibility systems represent links between genetic diversity and plant demography with the potential to directly impact on population dynamics. We use an individual‐based spatial simulation to investigate the demographic and genetic consequences of different self‐incompatibility systems for plants that vary in reproductive capacity and lifespan. The results support the idea that, in the absence of inbreeding effects, populations of self‐incompatible species will often be smaller and less viable than self‐compatible species, particularly for shorter‐lived organisms or where potential fecundity is low. At high ovule production and low mortality, self‐incompatible and self‐compatible species are demographically similar, thus self‐incompatibility does not automatically lead to reduced mate availability or population viability. Overall, sporophytic codominant self‐incompatibility was more limiting than gametophytic or sporophytic dominant systems, which generally behaved in a similar fashion. Under a narrow range of conditions, the sporophytic dominant system maintained marginally greater mate availability owing to the production of S locus homozygotes. While self‐incompatibility reduces population size and persistence for a broad range of conditions, the actual number of S alleles, beyond that required for reproduction, is important for only a subset of life histories. For these situations, results suggest that addition of new S alleles may result in significant demographic rescue.     

Genetic diversity,sexual condition,and microhabitat preference determine mating patterns in Sphagnum (Sphagnaceae) peat‐mosses

In bryophytes, the possibility of intragametophytic selfing creates complex mating patterns that are not possible in seed plants, although relatively little is known about patterns of inbreeding in natural populations. In the peat‐moss genus Sphagnum, taxa are generally bisexual (gametophytes produce both sperm and egg) or unisexual (gametes produced by separate male and female plants). We sampled populations of 14 species, aiming to assess inbreeding variation and inbreeding depression in sporophytes, and to evaluate correlations between sexual expression, mating systems, and microhabitat preferences. We sampled maternal gametophytes and their attached sporophytes at 12–19 microsatellite loci. Bisexual species exhibited higher levels of inbreeding than unisexual species but did generally engage in some outcrossing. Inbreeding depression did not appear to be common in either unisexual or bisexual species. Genetic diversity was higher in populations of unisexual species compared to populations of bisexual species. We found a significant association between species microhabitat preference and population genetic diversity: species preferring hummocks (high above water table) had populations with lower diversity than species inhabiting hollows (at the water table). We also found a significant interaction between sexual condition, microhabitat preference, and inbreeding coefficients, suggesting a vital role for species ecology in determining mating patterns in Sphagnum populations. © 2015 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 115 , 96–113.     

Environmental conditions during early life determine the consequences of inbreeding in Agrostemma githago (Caryophyllaceae)

In an inbred population, selection may reduce the frequency of deleterious recessive alleles through a process known as purging. Empirical studies suggest, however, that the efficacy of purging in natural populations is highly variable. This variation may be due, in part, to variation in the expression of inbreeding depression available for selection to act on. This experiment investigates the roles of life stage and early‐life environment in determining the expression of inbreeding depression in Agrostemma githago. Four population‐level crosses (‘self’, ‘within’, ‘near’ and ‘far’) were conducted on 20 maternal plants from a focal population. Siblings were planted into one of three early environmental treatments with varying stress levels. Within the focal population, evidence for purging of deleterious recessive alleles, as well as for variation in the expression of inbreeding depression across the life cycle was examined. In addition, the effect of early environment on the expression of inbreeding depression and the interaction with cross‐type was measured. We find that deleterious recessive alleles have not been effectively purged from our focal population, the expression of inbreeding depression decreases over the course of the life cycle, and a stressful early environment reduces the variance in inbreeding depression expressed later in life, but does not consistently influence the relative fitness of inbred versus outcrossed individuals.     

Inbreeding and incompatibility in Trichogramma nr. brassicae: evidence and implications for quality control

Inbreeding effects and incompatibility relationships were examined in strains of the egg parasitoid Trichogramma nr brassicae (Hymenoptera: Trichogrammatidae) from southeastern Australia. Crosses between strains provided weak evidence of incompatibility in a few cases. However sex ratio in crosses within strains tended to be more female-biased than in crosses between strains. Inbreeding was imposed for four generations (F>0.59) of sib mating. The fitness of inbred strains was compared to that of outbred strains generated by crossing the inbred strains. No effects of inbreeding were found for any of the four female traits examined (fecundity, body length, head width and hind tibia length), indicating that T. nr. brassicae is not subjected to inbreeding depression. Inbreeding effects were also not found for male mating success as expected for the haploid sex. There were differences among strains for all traits apart from fecundity, indicating heritable variation. Strain differences for fitness measures were uncorrelated with wasp size. The potential use of inbreeding in the quality control of Trichogramma for mass-release is discussed. Inbreeding may be a useful tool in minimising the effects of laboratory adaptation, thereby extending the useful life of a strain.     

STRONG INBREEDING DEPRESSION IN TWO SCANDINAVIAN POPULATIONS OF THE SELF‐INCOMPATIBLE PERENNIAL HERB ARABIDOPSIS LYRATA

Inbreeding depression is a key factor influencing mating system evolution in plants, but current understanding of its relationship with selfing rate is limited by a sampling bias with few estimates for self‐incompatible species. We quantified inbreeding depression (δ) over two growing seasons in two populations of the self‐incompatible perennial herb Arabidopsis lyrata ssp. petraea in Scandinavia. Inbreeding depression was strong and of similar magnitude in both populations. Inbreeding depression for overall fitness across two seasons (the product of number of seeds, offspring viability, and offspring biomass) was 81% and 78% in the two populations. Chlorophyll deficiency accounted for 81% of seedling mortality in the selfing treatment, and was not observed among offspring resulting from outcrossing. The strong reduction in both early viability and late quantitative traits suggests that inbreeding depression is due to deleterious alleles of both large and small effect, and that both populations experience strong selection against the loss of self‐incompatibility. A review of available estimates suggested that inbreeding depression tends to be stronger in self‐incompatible than in self‐compatible highly outcrossing species, implying that undersampling of self‐incompatible taxa may bias estimates of the relationship between mating system and inbreeding depression.     

Significant differences in outcrossing rate,self‐incompatibility,and inbreeding depression between two widely hybridizing species of Geum

Geum urbanum and Geum rivale are two widely hybridizing perennial herbs. Estimation of the breeding systems of these taxa using nuclear microsatellite markers scored in mother–progeny arrays demonstrated that, in pure populations, G. urbanum is predominantly selfing (outcrossing rate, t = 0.058 to 0.177), whereas G. rivale is predominantly outcrossing (t = 0.686–0.775). Theory suggests that hybridization between inbreeding and outcrossing species can potentially generate novel inbreeding lineages. However, the establishment of such lineages may be restricted either by self‐incompatibility loci or deleterious recessive alleles derived from the outcrossing parent. To assess the likelihood that hybridization between G. urbanum and G. rivale will generate novel inbreeding lineages, self‐incompatibility and inbreeding depression were investigated in the two taxa. Seed set in the absence of pollinators, and after controlled self‐ and cross‐pollination, was measured to study self‐incompatibility. Inbreeding depression was measured by estimating the relative fitness of offspring from controlled self‐and cross‐pollinations. Geum urbanum was fully self‐compatible [self‐compatibility index (SCI) = 1] and bagged flowers showed full seed set. By contrast, only 3% of bagged flowers set seed in G. rivale and controlled self‐pollinations showed a 60–80% reduction in seed set compared to controlled outcross pollinations (SCI = 0.28). There was no evidence for inbreeding depression in G. urbanum, although significant, albeit low levels of inbreeding depression were detected in one of two G. rivale populations (δ = 0.33). The implication of these results is that if genetic material from G. rivale was incorporated into a hybrid with a selfing morphology, the establishment of this selfing lineage could be compromised by self‐incompatibility and inbreeding depression. The wider implications of these results for evolution in hybrid swarms between G. urbanum and G. rivale are discussed. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 101 , 977–990.     

Breeding systems in Clivia (Amaryllidaceae): late‐acting self‐incompatibility and its functional consequences

Late‐acting (ovarian) self‐incompatibility, characterized by minimal or zero seed production following self‐pollen tube growth to the ovules, is expected to show phylogenetic clustering, but can otherwise be difficult to distinguish from early‐acting inbreeding depression. In Amaryllidaceae, late‐acting self‐incompatibility has been proposed for Narcissus (Narcisseae) and Cyrtanthus (Cyrtantheae). Here, we investigate whether it occurs in the horticulturally important genus Clivia (Haemantheae) and test whether species in this genus experience ovule discounting in wild populations. Seed‐set results following controlled hand pollinations revealed that Clivia miniata and C. gardenii are largely self‐sterile. Self‐ and cross‐pollinated flowers of both species had similar proportions of pollen tubes entering the ovary, and those of C. gardenii also did not differ in the proportions of pollen tubes that penetrated ovules, thus ruling out classical gametophytic self‐incompatibility acting in the style, but not early inbreeding depression. Flowers that received equal mixtures of self‐ and cross‐pollen set fewer seeds than those that received cross‐pollen only, but it was unclear whether this effect was a result of ovule discounting or interactions on the stigma. The prevention of self‐pollination by the emasculation of either single flowers or whole inflorescences in wild populations did not affect seed set, suggesting that ovule discounting is not a major natural limitation on seed production. Flowers typically produce one to three large fleshy seeds from approximately 16 available ovules, even when supplementally hand pollinated, suggesting that fecundity is mostly resource limited. The results of this study suggest that Clivia spp. are largely self‐sterile as a result of either a late‐acting self‐incompatibility system or severe early inbreeding depression, but ovule discounting caused by self‐pollination is not a major constraint on fecundity. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 175 , 155–168.     

Effects of inbreeding on phenotypic plasticity in cultivated Phlox

Summary Inbreeding is known to increase developmental instability in outbreeding plants, and it has been argued that phenotypic plasticity in response to environmental variation might be similarly affected. To investigate whether phenotypic plasticity is altered by inbreeding, an outcrossed group and three successive generations of inbred cultivated Phlox drummondii were grown in six different treatments (Control, Low Water, Low Nutrient, Early and Late Leaf Removal, and Small Pots). Twelve plant characters were measured to determine the effects of the treatments and inbreeding. For those characters where inbreeding level by treatment interaction was indicated, the amounts and patterns of plasticity were examined to determine the source of the interaction. Despite substantial evidence for inbreeding depression of plant vigor and fecundity, there was no indication of an increase in the amount of phenotypic plasticity with progressive inbreeding. There was also no evidence that inbreeding systematically disrupts the pattern of plastic response to the environment.     

Digest: Stress and inbreeding depression in Drosophila melanogaster*

Do stressful conditions exacerbate inbreeding depression? Using Drosophila melanogaster, Schou et al. (2018) examine the mechanisms underlying the interaction between stress and inbreeding depression. The authors found that gene expression in inbred individuals was highly stochastic under benign conditions, but differential gene expression in inbred individuals was reduced compared to controls under stressful conditions.     

Evidence for inbreeding depression in a species with limited opportunity for maternal effects

It is often assumed that mating with close relatives reduces offspring fitness. In such cases, reduced offspring fitness may arise from inbreeding depression (i.e., genetic effects of elevated homozygosity) or from post‐mating maternal investment. This can be due to a reduction in female investment after mating with genetically incompatible males (“differential allocation”) or compensation for incompatibility (“reproductive compensation”). Here, we looked at the effects of mating with relatives on offspring fitness in mosquitofish, Gambusia holbrooki. In this species, females are assumed to be nonplacental and to allocate resources to eggs before fertilization, limiting differential allocation. We looked at the effects of mating with a brother or with an unrelated male on brood size, offspring size, gestation period, and early offspring growth. Mating with a relative reduced the number of offspring at birth, but there was no difference in the likelihood of breeding, gestation time, nor in the size or growth of these offspring. We suggest that due to limited potential for maternal effects to influence these traits that any reduction in offspring fitness, or lack thereof, can be explained by inbreeding depression rather than by maternal effects. We highlight the importance of considering the potential role of maternal effects when studying inbreeding depression and encourage further studies in other Poeciliid species with different degrees of placentation to test whether maternal effects mask or amplify any genetic effects of mating with relatives.     

Intergenerational effects of inbreeding in Nicrophorus vespilloides: offspring suffer fitness costs when either they or their parents are inbred

Inbreeding depression is the reduction in fitness caused by mating between related individuals. Inbreeding is expected to cause a reduction in offspring fitness when the offspring themselves are inbred, but outbred individuals may also suffer a reduction in fitness when they depend on care from inbred parents. At present, little is known about the significance of such intergenerational effects of inbreeding. Here, we report two experiments on the burying beetle Nicrophorus vespilloides, an insect with elaborate parental care, in which we investigated inbreeding depression in offspring when either the offspring themselves or their parents were inbred. We found substantial inbreeding depression when offspring were inbred, including reductions in hatching success of inbred eggs and survival of inbred offspring. We also found substantial inbreeding depression when parents were inbred, including reductions in hatching success of eggs produced by inbred parents and survival of outbred offspring that received care from inbred parents. Our results suggest that intergenerational effects of inbreeding can have substantial fitness costs to offspring, and that future studies need to incorporate such costs to obtain accurate estimates of inbreeding depression.     

Inbreeding depression in an insect with maternal care: influences of family interactions,life stage and offspring sex

Although inbreeding is commonly known to depress individual fitness, the severity of inbreeding depression varies considerably across species. Among the factors contributing to this variation, family interactions, life stage and sex of offspring have been proposed, but their joint influence on inbreeding depression remains poorly understood. Here, we demonstrate that these three factors jointly shape inbreeding depression in the European earwig, Forficula auricularia. Using a series of cross‐breeding, split‐clutch and brood size manipulation experiments conducted over two generations, we first showed that sib mating (leading to inbred offspring) did not influence the reproductive success of earwig parents. Second, the presence of tending mothers and the strength of sibling competition (i.e. brood size) did not influence the expression of inbreeding depression in the inbred offspring. By contrast, our results revealed that inbreeding dramatically depressed the reproductive success of inbred adult male offspring, but only had little effect on the reproductive success of inbred adult female offspring. Overall, this study demonstrates limited effects of family interactions on inbreeding depression in this species and emphasizes the importance of disentangling effects of sib mating early and late during development to better understand the evolution of mating systems and population dynamics.     

Parental effects on inbreeding depression in a beetle with obligate parental care

Inbreeding depression occurs when individuals who are closely related mate and produce offspring with reduced fitness. Although inbreeding depression is a genetic phenomenon, the magnitude of inbreeding depression can be influenced by environmental conditions and parental effects. In this study, we tested whether size-based parental effects influence the magnitude of inbreeding depression in an insect with elaborate and obligate parental care (the burying beetle, Nicrophorus orbicollis). We found that larger parents produced larger offspring. However, larval mass was also influenced by the interaction between parental body size and larval inbreeding status: when parents were small, inbred larvae were smaller than outbred larvae, but when parents were large this pattern was reversed. In contrast, survival from larval dispersal to adult emergence showed inbreeding depression that was unaffected by parental body size. Our results suggest that size-based parental effects can generate variation in the magnitude of inbreeding depression. Further work is needed to dissect the mechanisms through which this might occur and to better understand why parental size influences inbreeding depression in some traits but not others.     

Variation in inbreeding depression among populations of the seed beetle, Stator limbatus

Inbreeding depression has been documented in many insect species, but the degree to which it varies among traits within populations and among populations within species is poorly understood. We used a single‐generation factorial breeding design to examine variation in inbreeding depression among three populations of the seed‐feeding beetle, Stator limbatus Horn (Coleoptera: Chrysomelidae: Bruchinae), from the southwestern USA. Eggs from sib matings were less likely to develop and hatch, and larval hatch‐to‐adult mortality was higher for offspring of sib matings. Overall, inbreeding resulted in a reduction in the proportion of eggs that produced an adult from >80% for outbred matings in all three populations to an average of only 54% for inbred matings. Of those larvae that survived to adult, inbred beetles took ～1.5 days (>5%) longer to reach adult. The only measured trait not affected by inbreeding was adult body mass. The degree to which inbreeding increased mortality varied among the populations – inbreeding depression was lowest in the population that is most isolated. Although populations of S. limbatus are generally large in nature our results suggest that increased inbreeding associated with population fragmentation can have substantial effects on fitness of S. limbatus.