Advances in the field of high‐molecular‐weight polycyclic aromatic hydrocarbon biodegradation by bacteria

Interest in understanding prokaryotic biotransformation of high-molecular-weight polycyclic aromatic hydrocarbons (HMW PAHs) has continued to grow and the scientific literature shows that studies in this field are originating from research groups from many different locations throughout the world. In the last 10 years, research in regard to HMW PAH biodegradation by bacteria has been further advanced through the documentation of new isolates that represent diverse bacterial types that have been isolated from different environments and that possess different metabolic capabilities. This has occurred in addition to the continuation of in-depth comprehensive characterizations of previously isolated organisms, such as Mycobacterium vanbaalenii PYR-1. New metabolites derived from prokaryotic biodegradation of four- and five-ring PAHs have been characterized, our knowledge of the enzymes involved in these transformations has been advanced and HMW PAH biodegradation pathways have been further developed, expanded upon and refined. At the same time, investigation of prokaryotic consortia has furthered our understanding of the capabilities of microorganisms functioning as communities during HMW PAH biodegradation.     

Degradation of polycyclic aromatic hydrocarbons and long chain alkanes at 6070 °C by Thermus and Bacillus spp

Although polycyclic aromatic hydrocarbons (PAH) and alkanesare biodegradable at ambient temperature, in some cases low bioavailabilities are thereason for slow biodegradation. Considerably higher mass transfer rates and PAH solubilities and hence bioavailabilities can be obtained at higher temperatures. Mixed and pure cultures of aerobic, extreme thermophilic microorganisms (Bacillus spp., Thermus sp.) were used to degrade PAH compounds and PAH/alkane mixtures at 65 °C. The microorganismsused grew on hydrocarbons as sole carbon and energy source. Optimal growthtemperatures were in the range of 60–70 °C at pH values of 6–7. The conversion of PAH with 3–5 rings (acenaphthene, fluoranthene, pyrene, benzo[e]pyrene) was demonstrated. Efficient PAH biodegradation required a second, degradable liquid phase. Thermus brockii Hamburg metabolized up to 40 mg (l h)^-1 pyrene and 1000 mg(1 h)^-1 hexadecane at 70 °C. Specific growth rates of 0.43 h^-1 were measured for this strain with hexadecane/pyrene mixtures as the sole carbon and energy source in a 2-liter stirred bioreactor. About 0.7 g cell dry weight were formed from 1 g hydrocarbon. The experiments demonstrate the feasibility and efficiency of extreme thermophilic PAH and alkane biodegradation.     

Bioremediation of a polycyclic aromatic hydrocarbon‐contaminated soil by using different aerobic batch bioreactor systems

The intrinsic depuration capability of a soil contaminated by polycyclic aromatic hydrocarbons (PAHs) originating from a contaminated industrial site was evaluated in this study by using different aerobic batch bioreactors: a slurry‐phase bioreactor, a blade‐agitated bioreactor, and a rotary vessel bioreactor. For each bioreactor, the disappearance of 14 target PAHs and of the total extractable organic matter was monitored. The three treatments exhibited rapid and extensive removal of the PAHs, which disappeared at different degradation rates according to their molecular weight and aromaticity degree. PAHs with two, three, and four aromatic rings were degraded in sequence, with average rates that generally decreased as the number of molecule rings increased. A slight increase in the bacterial biomass concentration and significant CO₂ production were also observed during the time course of the treatments. Among the three treatments, the slurry‐phase system provides the most effective and fastest removal of the PAHs and the organic extractable matter. However, the semisolid‐phase systems exhibited PAH depletion, capabilities higher than those reported in the literature for soils with similar particle size distribution in solid‐phase conditions.     

Biodegradation of a high molecular weight aliphatic ether – indications of an unusual biodegradation pathway

An aliphatic ether (1-phytanyl-1-octadecanyl-ether) of high molecular weight was used as a sole carbon source in degradation experiments with different aerobic bacteria. The enriched culture B5, obtained from fuel contaminated soils, was able to degrade the substance for more than 90%. A culture of Rhodococcus ruber was similarly effective. Detailed investigation of the metabolites allowed us to characterize an unusual degradation pathway via a mid-chain oxidation mechanism (`internal oxidative pathway'). Obviously, formation of intermediate alkenes mainly at the unbranched side chain was a prerequisite for bacterial degradation of the added substrate. Degradation proceeded – in spite of the usually preferred terminal oxidation – via oxidation of the internal double bond and was followed by an ester cleavage. In turn, a series of alcohols was formed which were subsequently oxidized to the respective carboxylic acids and were further metabolized via the normal -oxidation pathway.     

Biosynthesis of poly-β-hydroxybutyrate (PHB) with a high molecular mass by a mutant strain of Azotobacter vinelandii (OPN)

The aim of this study was to characterize the influence of the aeration conditions on the production of PHB and its molecular mass in a mutant strain of Azotobacter vinelandii (OPN), which carries a mutation on ptsN, the gene encoding enzyme IIA^Ntr, previously shown to increase the accumulation of PHB. Cultures of A. vinelandii wild-type strain OP and its mutant derivative strain OPN were grown in 500-mL flasks, containing 100 and 200 mL of PY sucrose medium. PHB production and its molecular mass were analyzed at the end of the culture. The molecular mass (MM) was significantly influenced by the aeration conditions and strain used. A polymer with a higher molecular weight was produced under low aeration conditions for both strains. A maximal molecular mass of 2,026 kDa (equivalent to 3,670 kDa measured by GPC) was obtained with strain OPN cultured under low-aeration conditions, reaching a value two-fold higher than that obtained from the parental strain OP (MM?=?1,013 kDa) grown under the same conditions. Aeration conditions and the ptsN mutation influence the molecular mass of the PHB produced by A. vinelandii affecting in turn its physico-chemical properties.     

Phosphorylation and biosynthesis of high molecular weight proteins of tumor nuclear meatrix

Our previous studies showed a predominance of high molecular weight protein group in tumor nuclear matrices.Contrary to normal cells,proteins of this group are preferentially phosphorylated.Phosphoproteins of hepatoma nuclear matrix are selectively subjected to rapid proteolysis.By alkali treatment and a monoclonal antibody against phosphotyrosyl residue the presence of two high molecular weight bands of phosphotyrosyl-containing proteins was detected in nuclear matrices of tumor but not of normal liver cells.High molecular weight protein group of tumor nuclear matrices revealed also a rapid turnover and preferential incorporation of labeled amino acids selectively inhibited by chloramphenicol.     

Using liquid chromatography–tandem mass spectrometry to quantify monohydroxylated metabolites of polycyclic aromatic hydrocarbons in urine

We present an assay which employs enzyme digestion and solid phase extraction followed by liquid chromatography–tandem mass spectrometry to simultaneously quantify 16 hydroxylated polycyclic aromatic hydrocarbons (OHPAHs) in 3-ml samples of urine. The analytes consisted of 2-, 3-, and 4-ring OHPAHs, namely, 1- and 2-hydroxynaphthalene (1- and 2-OHNAP), 2-hydroxyfluorine (2-OHFLU), 1-, 2-, 3-, 4-, and 9-hydroxyphenanthrene (1-, 2-, 3-, 4-, and 9-OHPHE), 1-hydroxypyrene (1-OHPYR), 1- and 2-hydroxybenzo(a)anthracene (1- and 2-OHBAA), 3- and 6-hydroxychrysene (3- and 6-OHCHR) and 3-, 7-, and 9-hydroxybenzo(a)pyrene (3-, 7-, and 9-OHBAP). The method was validated using urine samples from steel workers and control subjects. The coefficients of variation of the method for the particular analytes were between 7% and 27% and the limits of quantitation were between 0.002 and 0.010 μg/l urine. The 2- and 3-ring OHPAHs were easily quantified in all subjects. However, 1-OHPYR was the only representative of the 4- and 5-ring metabolites that could be quantified. Pairwise correlations showed that all OHPAHs were highly correlated with each other (0.553 ≤ r ≤ 0.910) and with 1-OHPYR (0.614 ≤ r ≤ 0.910), the metabolite most widely accepted as a short-term biomarker of exposure to PAHs. The analyte, 2-OHNAP exhibited the lowest pairwise correlations with the other OHPAHs (0.542 ≤ r ≤ 0.628), presumably due to confounding by smoking. Metabolites of phenanthrene, an abundant PAH and the smallest to possess a bay region, are promising OHPAHs for characterizing both exposures to PAHs and the various metabolic pathways.     

Immunochemical characterization of a human high molecular weight — melanoma associated antigen identified with monoclonal antibodies

Sodium dodecyl sulfate polyacrylamide gel analysis of a high molecular weight (HMW) human melanoma associated antigen (MAA) defined by murine monoclonal antibodies revealed a number of distinct polypeptides ranging from 80,000 up to 280,000 daltons, in addition to an extremely heterogeneous group of components distributed over a wide range in apparent molecular weight (300,000-700,000 daltons). The 280,000 dalton and the larger heterogeneous molecular weight material are glycosylated since they are labeled with 3H-sugars. The HMW-MAA is readily solubilized in the absence of detergents and the entire series of polypeptides fractionates together in the void volume of a Sephadex G200 column. Peptide maps of the various polypeptides of the HMW-MAA, generated by Staphylococcus aureus V-8 protease, are essentially the same except that some of the proteolytic fragments derived from the lower molecular weight polypeptides (80,000 daltons) are present in greater amounts than are similar fragments derived from the larger molecular weight polypeptides; the latter finding suggests that the complexity in molecular weight of the MAA may reflect combinations of several base subunits. Proteolytic cleavage of the HMW-MAA generates a number of peptides ranging in molecular weight from 77,000 daltons to less than 12,000 daltons, which still react with monoclonal antibodies and can distinguish monoclonal antibodies specific for different antigenic determinants of this MAA.     

Enhanced degradation of polycyclic aromatic hydrocarbons in soil treated with an advanced oxidative process — Fenton's Reagent

Polycyclic aromatic hydrocarbons (PAHs) are resistant to present bioremediation practices. This study was conducted to determine if pretreatment with an advanced oxidative process (Fenton's reagent; H₂O₂ + FeSO₄) could enhance PAH degradation in soil that had previously been exposed to crude oil. PAHs were more readily degraded after incubation for 56 d when treated with H₂O₂ (2.8 M) plus FeSO₄ (0.1 M) compared with degradation rates without the addition of Fenton's reagent during the same time period. Overall, the use of Fenton's reagent as a pretreatment promoted the mineralization of the nine spiked PAHs by an average of 87%. Degradation of native PAH parent compounds (180 to 840 μg of PAH per kilogram of soil) in the same soil incubated with Fenton's reagent for 7 d was enhanced 44 and 39% for phenanthrene and fluoranthene, respectively, but only 5 and 1% for pyrene and chrysene, respectively, when compared with no addition of Fenton's reagent. Pretreatment of the soil with a surfactant (10 mM sodium dodecylsulfate) before the addition of Fenton's reagent increased the native PAH degradation rate 84, 83, 55, and 32% for the parent compounds phenanthrene, fluoranthene, pyrene, and chrysene, respectively, compared with no addition of Fenton's reagent. Degradation of PAHs was confirmed by HPLC‐UV analyses. The use of Fenton's reagent (OH") appears to have applications in bioremediation practices of the most recalcitrant chemical compounds in nature (PAHs), particularly with the use of surfactants.     

A study of cornstarch granule digestion by an unusually high molecular weightα-amylase secreted byLactobacillus amylovorus

The cells ofLactobacillus amylovorus (NRRL B-4540), grown in a medium containing 2% cornstarch as the sole carbon source, secreted an amylase activity that rapidly solubilized cornstarch. Fourier transform infrared (FTIR) spectroscopic analyses showed that 80–90% of starch was consumed by bacteria in a 10-day-old culture medium. The remnant of starch granules digested in the culture medium inoculated with the cells ofL. amylovorus have also lost their characteristic iodine-binding capacity as visualized by starch dye-binding microplate assay and light microscopy. Scanning electron miscroscopy (SEM) of granules from a 48-h culture medium showed hollow and fragmented granules with a pitting phenomenon characteristically produced by-amylase activity. Analysis of an enzyme preparation from a culture medium ofL. amylovorus revealed that the putative enzyme appears to be a single protein band of unusually high M_r (150,000) on SDS gels stained for amylase activity. Analysis of starch digestion products by thin layer chromatography (TLC) showed enzyme activity typical of-amylase.The mention of firm names or trade products does not imply that they are endorsed or recommended by the U.S. Department of Agriculture over other firms or similar products not mentioned.     

Is 1-hydroxypyrene a reliable bioindicator of measured dietary polycyclic aromatic hydrocarbon under normal conditions?

Five healthy volunteers consumed similar amounts of identical foods for 5 consecutive days. The concentration of pyrene and of benzo(a)pyrene was determined in each of the 15 meals by a short analytical method that included sample saponification, solvent extraction, and HPLC analysis. The volunteers also provided three daily total volume 8-h urine samples for the duration of the study for the assessment of 1-hydroxypyrene, a biomarker of pyrene and polycyclic aromatic hydrocarbon (PAH) exposure. Mean recoveries were 83 and 75%, respectively, for pyrene and benzo(a)pyrene in food. Daily dietary pyrene doses varied from 0.7 to 3 microg. Excluding two outliers consisting of meals containing charbroiled pork and beef, pyrene content in the meals estimated from the published literature data was correlated to the measured pyrene, but overestimated the actual concentration by ca. 70%. Despite the identical ingested doses of pyrene, there was a 50-76% (coefficient of variation) interindividual variability in the daily-excreted amount of 1-hydroxypyrene. Urinary excretion of this metabolite was not correlated with ingested dose of pyrene under the normal feeding conditions used in this study. Bioavailability, enzymatic polymorphism, and differences in enterohepatic cycling of the metabolite may contribute to the observed variability. It was calculated that dietary pyrene intake accounts for between 87.5 and 99.8% of the sum of dietary and inhalation intake. From the presented data, unless the above-mentioned factors are taken into account, 1-hydroxypyrene might not be a reliable bioindicator of ingested pyrene (PAHs) under normal feeding conditions.     

A new form of renin in normal human plasma: “big renin” is a mixture of inactive prorenin and the new active high molecular weight renin

A new form of active renin was separated from inactive prorenin in normal human plasma by a new affinity chromatographic method on a column of Cibacron Blue F3GA-agarose. This active renin has a molecular weight of 54,000, considerably higher than the hitherto recognized active renin of 40,000 dalton in human plasma. The molecular weight of inactive prorenin was 56,000±2,000. Active renin produced from the inactive prorenin by trypsin or pepsin digestion or by acid treatment in $\text{in vitro}$ experiments showed a molecular weight of 54,000±2,000. Active renin with a molecular weight of 40,000 was not found in 6 samples of untreated plasma of normal human subjects nor was it formed by treatment with trypsin, pepsin, or acid pH. It is concluded that a large form of active renin (54,000 dalton) exists in normal human plasma which is distinct from a smaller form and that the activatable “big renin” is a mixture of this active renin and totally inactive prorenin. This explains the absence of molecular weight change during the activation of “big renin”.     

Degradation of wheat straw by a microbial community —stimulation by a polysaccharidase complex

Laboratory-scale reactors were used to watch aspects of biodegradation of wheat straw when supplemented with polysaccharidases (Czym) to increase the enzyme production of microorganisms involved during a composting process for mushroom production. Biochemical and biological parameters were tested both under aerobic and O₂-limited conditions to assess degradability. These were measurement of released CO₂ and NH₃, determination of neutral detergent fibre content and cellulase activities from compost extract. The addition of Czym to decomposing straw had three consequences: (i) it supplied and released low quantities of readily available sugars; (ii) it increased the cellulase activities in the substrates; (iii) it increased the number of bacteria under aerobic conditions. The three effects were linked and the small quantity of sugars released by the addition of Czym may have acted as an activator of bacterial activities through an inductive mechanism. Correspondence to: S. Libmond     

Beijerinckia sp strain B1: a strain by any other name . . . . .

Beijerinckia sp strain B1 grows with biphenyl as its sole source of carbon and energy. A mutant, strain B8/36, oxidized biphenyl to cis-(2S,3R)-dihydroxy-l-phenylcyclohexa-4,6-diene (cis-biphenyl dihydrodiol). Strain B8/36 oxidized anthracene, phenanthrene, benz[a]anthracene and benzo[a]pyrene to cis-dihydrodiols. Other substrates oxidized to cis-dihydrodiols were dibenzofuran, dibenzothiophene and dibenzo-p-dioxin. Biphenyl dioxygenase activity was observed in cells of Beijerinckia B1 and B8/36 after growth in the presence of biphenyl, m-, p-xylene and salicylate. Recent studies have led to the reclassification of Beijerinckia B1 as Sphingomonas yanoikuyae strain B1. Subsequent biotransformation studies showed that S. yanoikuyae B8/36 oxidized chrysene to a bis-cis-diol with hydroxyl substituents at the 3,4- and 9,10-positions. Dihydronaphthalene was oxidized to cis-1,2-dihydroxy-1,2,3,4-tetrahydronaphthalene, naphthalene, cis-1,2-dihydroxy-1,2-dihydronaphthalene and 2-hydroxy-1,2-dihydronaphthalene. Anisole and phenetole were oxidized to phenol. Thus the S. yanoikuyae biphenyl dioxygenase catalyzes cis-dihydroxylation, benzylic monohydroxylation, desaturation and dealkylation reactions. To date, the genes encoding biphenyl dioxygenase have not been cloned. However, the nucleotide sequence of a S. yanoikuyaeB1 DNA fragment contains five different α subunits as determined by conserved amino acids coordinating iron in a Rieske [2Fe-2S] center and mononuclear iron at the catalytic site. The specific role of the different putative oxygenases in biotransformation reactions catalyzed by S. yanoikuyae is not known and presents an exciting challenge for future studies. Received 29 May 1999/ Accepted in revised form 23 June 1999     

Historical changes in the aquatic environment and input of polycyclic aromatic hydrocarbons over 1000 years in Lake Kitaura,Japan

We examined the vertical distributions of total organic carbon (TOC), total nitrogen (TN), total sulfur (TS), and 21 polycyclic aromatic hydrocarbons (PAHs) in a 100-cm-long sediment core collected from Lake Kitaura, a small and shallow eutrophic freshwater lake in central Japan, to elucidate changes in its aquatic environment and the input of PAHs with respect to human activity over the last 1000 years. Using a cross-plot of TOC and TS, the aquatic environment of this lake was well classified into four stages: a marine–brackish water period (≤1321 AD), a brackish–freshwater period (1394–1646 AD), a freshwater period (1726–1958 AD), and a eutrophication period (≥1971 AD). During the current eutrophication period, both TOC and TN have increased dramatically and TOC/TN (which is a useful indicator for distinguishing between aquatic and terrestrial plant sources) has decreased because algal production has markedly increased recently due to eutrophication. The vertical distributions of PAHs (which have derived primarily from combustion over the last 1000 years) showed increases in layers corresponding to periods of volcanic activity in the 18th century, as well as dramatic increases from 1971 to the present. Thus, both the aquatic environment and the input of PAHs in Lake Kitaura have been strongly affected by recent human activity. On the other hand, among all of the PAHs, only perylene—which is known to be of biological origin—was consistently formed via first-order kinetics over the period covered by the core. Its formation was barely influenced by fluctuations in the input of the precursor of perylene or how reductive the environment in the bottom water was.     

16α-hydroxylation of progesterone by a strain ofactinomyces globosus

В систематическое исследование трансформации свойств Actinomycetes было было установлено, что 17 из 76 видов тестировани е преобразованы прогестерон по 16 га-гидрокси -п рогестерона. Оптимальные условия для этой трансформац ии были изучены этой трансформации б ыли изучены следующие результат ы:

1. (1)
   Оптимальное рН для данного типа трансформации была 6–7. На нижней hydroxylation ценностей была меш ает.