Phylogenetic investigations on the haplochromine Cichlidae of Lake Kivu (East Africa), based on lepidological characters*

The phylogeny of the haplochromine cichlids of Lake Kivu was studied using lepidological characters. Only one species, Haplochromis astatodon was found to have a closer relationship to a group outside Lake Kivu, namely Haplochromis sensu stricto. The other 14 species form a monophyletic lineage that is part of a subdivision in the large Lake Victoria-Edward-Kivu flock. The internal phylogeny of this lineage was resolved to the species level.     

Endemic diversification of the monophyletic cottoid fish species flock in Lake Baikal explored with mtDNA sequencing

In the ancient Lake Baikal in East Siberia, cottoid fishes have diversified into an endemic flock of 33 species. From an ancestral shallow-water, benthic life-style, Baikalian cottoids have shifted to deep-water life in environments even below 1500 m, and also colonized the pelagic habitat. We examined phylogenetic relationships among 22 Baikalian and 10 extra-Baikalian cottoid taxa using a total of 2822 bp of mitochondrial DNA sequence, from complete sequences of ATPase 8 and 6 and cytochrome b genes and the control region. Unlike in earlier studies, we found strong support for a monophyly of the whole endemic Baikalian cottoid diversity. The Baikalian clade, currently assigned to three families and 12 genera, appears to be nested within the Holarctic freshwater genus Cottus. In the molecular phylogeny, all but one of the current Baikalian genera formed well-supported monophyletic groups. However, the topology was inconsistent with the present morphology-based familial subdivision; particularly in positioning the genus Batrachocottus of Cottidae within Abyssocottidae. The branching order of the Baikalian genera could not be resolved completely, however; short basal branches indicate rapid diversification early in the history of the species flock. Using synonymous divergence rates from other fish species for calibration, the diversification of the Baikalian cottoids seems to have started in the Pliocene or early Pleistocene.     

Root anatomy of palms III. Ceroxyloideae,Nypoideae, Phytelephantoideae

Summary The root-anatomy of representatives of nine genera of Ceroxyloideae of the eleven genera accepted by UHL & DRANSFIELD (1987), of Nypa, the onliest genus of Nypoideae, and of all three genera of Phytelephantoideae have been studied. In Coryphoideae and Calamoideae every genus can be distinguished by the anatomy of the roots, whereas within one genus the species do not differ but slightly. This is true for the newly examined genera too and contributes both to define and identify the genera and towards an improved understanding of the relationship between genera and subfamilies. The genera of Ceroxyloideae are obviously related, they form a natural group, and even the somewhat isolated Pseudophoenix is well at home here. Both Nypa and Phytelephantoideae do not exhibit any affinities with other palms studied up to now.     

Kritische Revision der „Thlaspi”︁-Arten Europas,Afrikas und Vorderasiens I. Geschichte,Morphologie und Chorologie

In the general introduction of a taxonomical revision of the genus Thlaspi L. from Europa, the Near East and Africa — a conspectus of the species till now comprised within this genus has already been published — a historical survey of the genus Thlaspi is given. Morphological resp. anatomical characters have been judged. The structure of the seedtesta inter alia exhibited a different pattern which proved to be valuable for differentiation. In Thlaspi s. str. this pattern revealed to be well distinguishable from all the other Thlaspi-species hitherto put in this genus; thus showing Thlaspi s. str. a species-complex of its own. The characteristical differences of the numerous species out of the Thlaspi s. str.-complex allow further separation of different genera, so that the hitherto existing genus Thlaspi has been found to be a mosaic of different genera. The degree of their closer or wider relationship, however, could be investigated after extensive studies in different genera of the Brassicaceae (Cruciferae). A subordination of these complexes of closer relationship as subgenera of the genus Thlaspi is impossible, because the morphological and anatomical differences are too great. A persistency in the hitherto scope of a heterogenous genus Thlaspi is considered unreasonable and would encourage a greater humping of many genera within the family Brassicaceae which are well separated till now. This would not reflect the natural conditions. Additional figures of fruits and seedtestas of different species support this view. Finally the geographical distribution of the several genera has been described which in Noccaea Moench shows shortly the wide extension of this genus throughout northern Asia and the extratropical America.     

A revision of the genus Labidochromis (Teleostei: Cichlidae) from Lake Malawi

The diagnosis of the genus Labidochromis is revised to include species with bicuspid outer teeth. Sixteen species, of which 13 are new, are described and illustrated and the validity of five others is discussed. The interrelationships between members of the genus and the relationship of the genus to other genera are discussed. No clearly defined sister group to the genus has been found either within or outside the Lake Malawi cichlid species flock. A key based on the coloration of known species is included.     

A first phylogenetic analysis of Giant Pill-Millipedes (Diplopoda: Sphaerotheriida), a new model Gondwanan taxon, with special emphasis on island gigantism

The phylogeny of the Giant Pill-Millipedes, order Sphaerotheriida, is investigated using a new morphological character matrix comprising 89 characters. The majority of these characters are employed for the first time in millipedes. All trees obtained agree on the monophyletic status of the Sphaerotheriida and several of its tribes, each restricted to a modern land mass. The species from Madagascar displaying island gigantism do not form a monophyletic group. The classic division of Giant Pill-Millipedes into two families, Sphaerotheriidae and Zephronidae, was not reflected in the analysis. The genus Procyliosoma is the sister-group to all other Sphaerotheriida, rendering the family Sphaerotheriidae paraphyletic. A new family-level classification of Giant Pill-Millipedes, based on the current phylogeny, is introduced. The new family Procyliosomatidae contains only the genus Procyliosoma , distributed in Australia and New Zealand. The family Zephronidae remains unchanged, while the family Sphaerotheriidae now incorporates only the African Giant Pill-Millipede genera. All genera from southern India and Madagascar form a monophyletic group and are placed in the new family Arthrosphaeridae. The Malagasy genus Sphaeromimus is more closely related to the Indian Arthrosphaera species than to other genera from Madagascar. A biogeographical analysis identifies the group as a Gondwana taxon (with a notable absence from South America). The current phylogeny of Giant Pill-Millipede families mirrors perfectly the suggested break-up of Gondwana fragments 160–90 Ma. No evidence for a dispersal event could be found, highlighting the importance of Giant Pill-Millipedes as a potential model taxon.     

Phylogenetic relationships of the genus Dugesia (Platyhelminthes, Tricladida, Paludicola)

A phylogenetic analysis was performed on the genera and subgenera within the freshwater triclad family Dugesiidae, based on 19 terminal taxa and 17 morphological characters. The phylogenetic tree proposed has length of 27 steps and consistency index of 0.66. This phylogenetic hypothesis implies that the current genus Dugesia is paraphyletic and that its subgenera Girardia, Schmidiea and Dugesia S.S. should be elevated to the rank of genus. The genera Cura, Spathula and Neppia are presumed monophyletic by default because the database was unable to provide autapomorphies for any of these genera. The genera Dugesia S.S. and Neppia share sistergroup relationship. Several characters are discussed which were previously considered to be of phylogenetic importance but were not included in the present analysis. It is emphasized that sensory organs form potentially useful set of phylogenetic characters for the Dugesiidae.     

New taxa of terrestrial molluscs from Turkey (Gastropoda, Pristilomatidae, Enidae, Hygromiidae, Helicidae)

This paper reports on results of several collecting trips of the authors in Turkey. In the course of this research, a long-lasting question was addressed. It could be proven that the nominal species Bulimus frivaldskyi L. Pfeiffer, 1847 is closely related to Meijeriella canaliculata Bank, 1985, and thus this species is shifted from the genus Ena Turton, 1831, to the genus Meijeriella Bank, 1985. Meijeriella canaliculata Bank, 1985, could be recorded from Turkey for the first time. The nomenclatural situation of the species Euchondrus septemdentatus (Roth, 1839) vs. its replacement name Euchondrus borealis (Mousson, 1874) is discussed. A new arrangement of the species formely comprised in the genus Zebrina Held, 1837 is presented, and the genera Rhabdoena Kobelt & Moellendorff, 1902, and Leucomastus A. Wagner, 1927 are re-established. The following species and subspecies new to science could be described: Vitrea gosteliisp. n. (Pristilomatidae), Turanena demirsoyisp. n., Euchondrus paucidentatussp. n., Rhabdoena gosteliisp. n. (all Enidae), Metafruticicola kizildagensissp. n. (Hygromiidae), and Assyriella thospitis menkhorstissp. n. (Helicidae). For several other species, new distribution records are listed.     

Convergent evolution and paraphyly of the hawk-eagles of the genus Spizaetus (Aves, Accipitridae) – phylogenetic analyses based on mitochondrial markers

The phylogenetic relationships within the New and Old World hawk-eagle assemblage (genus Spizaetus ; Aves: Accipitridae) were studied using mitochondrial DNA sequences ( cytochrome b , control region). Eighty-four specimens representing all Spizaetus species and almost all currently distinguished subspecies as well as 11 other booted and non-booted 'eagle' genera from the Neotropics, Africa, Eurasia, South Asia and Australasia ( Oroaetus , Harpia , Morphnus , Lophaetus , Stephanoaetus , Hieraaetus , Aquila , Ictinaetus , Spilornis , Pithecophaga , Harpyopsis ) were investigated. Although the basal branching could not be resolved, our investigations clearly indicate that hawk-eagles represent a paraphyletic assemblage and thus their external similarities have to be ascribed to convergent evolution. The New World taxa of Spizaetus cluster together, but the South American species Oroaetus isidori appears embedded within this clade. The taxa from Southeast to East Asia form a clearly separated monophyletic group. It is further divided into two subgroups, which are also characterized by distinct juvenile plumage patterns. Spizaetus africanus , the only African representative of the genus, is found in a mixed cluster consisting of members of the genera Aquila and Hieraaetus . These findings are in accordance with previous studies of other authors based on various molecular markers and different sets of taxa, but disagree with current taxonomy. Therefore, we suggest assigning the species of the genus Spizaetus to three different genera: (1) Spizaetus (including Oroaetus isidori ) in Central and South America and (2) Nisaetus for the Southeast to East Asian group. (3) The African taxon ( Spizaetus africanus ) is discussed to be included into the genus Aquila. Furthermore, we propose to use the former genus name Lophotriorchis Sharpe, 1874, for the monotypic species Hieraaetus kienerii , which has an isolated phylogenetic position.     

Testing the monophyly and position of the North American shrubby desert genus Leucophyllum (Scrophulariaceae: Leucophylleae)

Leucophyllum is one of the most remarkable endemic genera of North American deserts, with its simultaneous bloom of showy purple flowers. With Eremogeton and probably Capraria it forms part of tribe Leucophylleae. Leucophyllum has 16 species distributed mostly throughout the Chihuahuan and Tehuacán deserts. The three genera were sampled to investigate the phylogenetic relationships among them and to test the monophyly of Leucophyllum, based on plastid DNA (trnL‐F, rps16) and nuclear ribosomal (nr)DNA (internal transcribed spacer) sequences. Bayesian inference and maximum‐likelihood analyses confirmed that tribe Leucophylleae is monophyletic and formed by the three Neotropical genera. Separate (plastid DNA and nrDNA) and combined analyses retrieved Leucophyllum as paraphyletic, with L. mojinense as the sister species to the rest of the species in the tribe and Capraria spp. nested in one of two clades of Leucophyllum. Further monographic work is needed to identify the defining characters and limits of the genera, but we suggest that L. mojinense, with its different vegetative architecture, distinctive flowers and dissimilar distribution could be placed in its own genus. Each of the two clades in Leucophyllum could be considered a genus in its own right, and Capraria and Eremogeton can be recognized as independent genera, as they are at present. Leucophyllum ambiguum, the type species of the genus, belongs to one of the clades so the species of the other could be considered members of a new genus. The only diagnostic character detected at present is a ventricose corolla tube in one of the clades in Leucophyllum and a pressed corolla tube in the other. © 2013 The Linnean Society of London     

Phylogeny of Oedogoniales (Chlorophyceae, Chlorophyta) inferred from 18S rDNA sequences with emphasis on the relationships in the genus Oedogonium based on ITS-2 sequences

The phylogeny of Oedogoniales was investigated by using nuclear 18S rDNA sequences. Results showed that the genus Oedocladium, as a separated clade, was clustered within the clade of Oedogonium; whereas the genus Bulbochaete was in a comparatively divergent position to the other two genera. The relationship among the species of Oedogonium was discussed, focusing on ITS-2 phylogeny analyzed combining with some morphological characteristics. Our results showed that all the dioecious nannandrous taxa involved in this study were resolved into one clade, while all the monocious taxa were clustered into another clade as a sister group to the former. The report also suggests that the dioecious macrandrous taxa form a paraphyly and could be more basally situated than the dioecious nannandrous and the monoecious taxa by means of molecular phylogeny and morphotype investigations.     

Relationships and divergence of some taxa of the subfamily Lycodinae (Zoarcidae,Pisces) based on molecular-genetic and morphological data

An integrated molecular-genetic and morphological study of 14 species of 6 genera of Zoarcidae of the subfamily Lycodinae was performed. A high coincidence of study results obtained using both methods was found. The generic independence of the genus Petroschmidtia that includes species P. albonotata and P. toyamensis was justified. It was shown that species L. schmidti and L. nigrocaudatus belong to the genus Lycogrammoides; and the generic status of the genus Bothrocarichthys with species B. microcephalus and of the genus Allolepis with species A. hollandi was restored. The studied taxa fall into three large monophyletic groups that include species of the genus Petroschmidtia, species of the genus Lycodes, and species of the genera Bothrocara, Allolepis, Bothrocarichthys, and Lycogrammoides. Taxa of the last group are characterized by a large complex of morphological differences from the first two groups, including the absence of ventral fins. A key to species and genera of Lycogrammoides and Bothrocarichthys was compiled. The problem of determination of the time of divergence of the studied zoarcid-like fish using the concept of “molecular clock” and its calibration according to paleontological and paleogeographic data is discussed.     

Phylogeny of extant genera in the family Characeae (Charales,Charophyceae) based on rbcL,sequences and morphology

Extant genera of Characeae have been assigned to two tribes: Chareae (Chara, Lamprothamnium, Nitellopsis, and Lychnothamnus) and Nitelleae (Nitella and Tolypella), based on morphology of the thallus and reproductive structures. Character analysis of fossil and extant oogonia suggest that Tolypella is polyphyletic, the genus comprising two sections, one in each of the two tribes. Eleven morphological characters and sequence data for the Rubisco large subunit (rbcL) were used to reconstruct the phylogeny of genera, including the two sections of Tolypella. Parsimony analysis of the rbcL data, with all positions and changes weighted equally, strongly supports the monophyly of the Characeae. The two Tolypella sections form a robust monophyletic group basal to the family. Transversion weighting yielded the same tree but with a paraphyletic Tolypella. The rbcL data strongly support monophyly of tribe Chareae but tribe Nitelleae is paraphyletic. Parsimony analysis of morphological data produced one unrooted tree consistent with monophyly of the two tribes; on this tree the Tolypella sections were paraphyletic. Combining morphological with rbcL data did not change the results derived from rbcL sequences alone. The rbcL data support the monophyly of the Characeae and Coleochaete, which together form a monophyletic sister group to embryophytes.     

基于线粒体Cyt b基因的线蛱蝶亚科的系统发育

基于线粒体Cytb基因部分序列,以波蛱蝶为外群,采用邻接法、最大简约法和贝叶斯法分别构建了中国线蛱蝶亚科10属25种蝶类的系统发育树,探讨了各主要类群间的系统发育关系。其结果表明,所有线蛱蝶亚科聚为两大枝:第一枝包括环蛱蝶属、菲蛱蝶属、蟠蛱蝶属和缕蛱蝶属,其中缕蛱蝶属与环蛱蝶族亲缘关系较近;第二枝包括丽蛱蝶属、穆蛱蝶属、线蛱蝶属、带蛱蝶属、律蛱蝶属和翠蛱蝶属,其中线蛱蝶属为非单系群,翠蛱蝶属和律蛱蝶属则为单系发生,并构成姐妹群。     

Serological contributions to the systematics of Ulex (Genisteae – Fabaceae) and allied genera

Seven Ulex species were compared serologically with 21 species of related genera. Seed proteins were employed to immunize rabbits; immune sera to 17 species were produced. The presence or absence of differential characters (spurs) was detected in immunodiffusion experiments and recorded in a square matrix for each antiserum. The interspecific correlation was then computed, and an ordination on principal components was obtained.
The results suggested that: (1) Ulex L. should include sect. Pseudogenista (= genus Nepa Webb) and sect. Slauracanthus (= genus Stauracanthus Link); (2) sect. Stauracanihus is closer to sect. Ulex than to sect. Pseudogenista; (3) Ulex is markedly dissimilar from any other genus, its highest similarity being to Genista sect. Phyllobotrys and to Chamaespartium; (4) Ulex behaves like other derived genera and can be regarded as an extremely derived form within the Genista evolutionary line; (5) Echinospartum seems a primitive genus, it is not closely related to Ulex but rather to Cytisanthus and allied genera. There is a good agreement between these results and morphological, phytogeographical and caryological evidence. A general outline of evolutionary relationships within the Genisteae is presented.     

DNA SEQUENCE DATA DEMONSTRATE THE POLYPHYLY OF THE GENUS CYSTOSEIRA AND OTHER SARGASSACEAE GENERA (PHAEOPHYCEAE)1

Phylogenetic relationships in the Sargassaceae were explored using three DNA markers, and the monophyly of its genera was challenged. Nineteen out of 24 currently recognized genera were sampled, representing 63 species. The variable mt23S‐tRNA Val intergenic spacer could only be aligned within genera and could not be used to infer intergeneric relationships. The partial mt23S was also useful to delineate genera and was alignable at the family level but provided few informative characters. Analysis of mt23S DNA sequences together with chloroplast‐encoded psbA sequences resulted in a better resolved phylogeny. Hormophysa was the first genus to branch off within the Sargassaceae, followed by Myriodesma; then the three genera Caulocystis, Carpoglossum, and Scaberia in unresolved order; and then Acrocarpia. The other taxa studied here were divided over three major clades, but there was no branch support for the monophyly of two of these. The genera Bifurcaria, Cystoseira, Halidrys, and Sargassum appeared polyphyletic. The following taxonomic changes are proposed: a new genus Brassicophycus for Bifurcaria brassicaeformis (Kützing) E. S. Barton; reinstatement of the genus Sargassopsis for Sargassum decurrens (R. Brown ex Turner) C. Agardh; reinstatement of the genus Sirophysalis for Indo‐Pacific Cystoseira trinodis (Forsskål) C. Agardh; reinstatement of the genus Polycladia for the western Indian Ocean species Cystoseira indica (Thivy et Doshi) Mairh, Cystoseira myrica (S. G. Gmelin) C. Agardh, and Acystis heinii Schiffner; and reinstatement of the genus Stephanocystis for the North Pacific Cystoseira species and Halidrys dioica N. L. Gardner. The European Cystoseira species should be split into three genera, but no name changes are proposed yet, because diagnostic characters were found only for the clade including the type species. Some evolutionary trends could be discerned from the mt23S + psbA phylogeny.     

Zooplankton of Lake Kivu, East Africa, half a century after the Tanganyika sardine introduction

The introduction into Lake Kivu of the planktivorous fish Limnothrissamiodon at the end of the 1950s raised major concern about thefate of mesozooplankton, but few data were available to assessthe impact of predation. In this study, we followed zooplanktonvariations in Lake Kivu for 3.5 years. Present Lake Kivu mesozooplanktonis dominated by cyclopoid copepods (Thermocyclops consimilis,Mesocyclops aequatorialis and Tropocyclops confinis), but cladoceransand rotifers are also present. Each year, total crustacean abundancein the plankton increased to a distinct seasonal maximum followinga rise of phytoplankton production associated with a deep epilimneticmixing in the dry season (August–September). This dependenceon phytoplankton resource suggests that mesozooplankton dynamicsin Lake Kivu is mainly bottom-up controlled, contrary to expectationsfrom the food web structure. However, measurements of body sizeindicate that sardine predation affects the cladoceran Diaphanosomaexcisum, whereas the larger copepods may efficiently escapepredation by migration in the deep mixolimnion at daytime. Totalbiomass of mesozooplankton in Lake Kivu is lower than in lakesTanganyika and Malawi. This may be related to the disappearanceof a large grazer that existed before the sardine introduction,whereas the large lakes of the same region have a more complexpelagic food web, with piscivorous fish, and with calanoid copepods,which can more efficiently exploit phytoplankton production.     

Reappraisal of the generic status of Pteroxygonum (Polygonaceae) on the basis of morphology,anatomy and nrDNA ITS sequence analysi

Gross morphology, fruit anatomy, tepal venation, pollen morphology, chromosome number and ITS sequence of Pteroxygonum Damm. & Diels as well as other related genera (Polygonum, Fallopia, Reynoutria, Fagopyrum, and Antenoron) have been investigated to evaluate the generic status of Pteroxygonum. Pt. giraldii Damm. & Diels has three sharp horns at the base of fruit, which is distinctive among all the genera investigated. Upon observation of fruits under a light microscope (LM), the exocarp of Pt. giraldii is usually thickened and delimited by the rectangular cells with some sporadic undulating lumen, while that of Fagopyrum is thin-walled and isodiametric to rectangular in the cell shape. Analysis of tepal venation was performed under a stereomicroscope, and two types of tepal venation were found in Fagopyrum and Pteroxygonum. The type I is trifid, observed in Pt. giraldii, F. esculentum Moench, F. dibotrys (D. Don) Hara and F. tataricum (L.) Gaertn. The type II, found in F. caudatum (Sam.) A. J. Li, F. urophyllum (Bur. & Franch.) H. Gross and F. gracilipes (Hemsl.) Damm. ex Diels, has the main vein extending from tepal base with some secondary veins. Evidence from tepal venation supports the previous classification in which Fagopyrum can be divided into a large-achene group and a small-achene group. Pollen morphology was investigated under a scanning electron microscope (SEM). The exine ornamentation of Pt. giraldii was finely reticulate with lumina diameter wider than muri width. The exine ornamentation in all the examined Fagopyrum species is, however, prominently sunken punctuate. The phylogenetic analysis of nuclear ribosomal DNA (nrDNA) ITS sequences in Pteroxygonum and related genera indicated that all the species form a well-supported monophyletic group with two clades. One includes Polygonum sect. Avicularia Meisn., genus Fallopia and genus Reynoutria, and the other consists of other sections of Polygonum, genus Fagopyrum and Pteroxygonum. The latter clade can be divided into two subclades. Fagopyrum species compose the first one, while Pteroxygonum giraldii, species of Polygonum (except sect. Avicularia) and Antenoron form the second one. In consideration of the above evidence, we conclude that Pteroxygonum is an independent genus in tribe Persicarieae, and should not be merged into the genus Fagopyrum.