Dissolution of calcite in the twilight zone: bacterial control of dissolution of sinking planktonic carbonates is unlikely

We investigated the ability of bacterial communities to colonize and dissolve two biogenic carbonates (Foraminifera and oyster shells). Bacterial carbonate dissolution in the upper water column is postulated to be driven by metabolic activity of bacteria directly colonising carbonate surfaces and the subsequent development of acidic microenvironments. We employed a combination of microsensor measurements, scanning electron microscopy (SEM), confocal laser scanning microscopy (CLSM) and image analysis and molecular documentation of colonising bacteria to monitor microbial processes and document changes in shell surface topography. Bacterial communities rapidly colonised shell surfaces, forming dense biofilms with extracellular polymeric substance (EPS) deposits. Despite this, we found no evidence of bacterially mediated carbonate dissolution. Dissolution was not indicated by Ca²⁺ microprofiles, nor was changes in shell surface structure related to the presence of colonizing bacteria. Given the short time (days) settling carbonate material is actually in the twilight zone (500–1000 m), it is highly unlikely that microbial metabolic activity on directly colonised shells plays a significant role in dissolving settling carbonates in the shallow ocean.     

Direct observation of microbial inhibition of calcite dissolution

Vertical scanning interferometry (VSI) provides a method for quantification of surface topography at the angstrom to nanometer level. Time-dependent VSI measurements can be used to study the surface-normal retreat across crystal and other solid surfaces during dissolution or corrosion processes. Therefore, VSI can be used to directly and nondestructively measure mineral dissolution rates with high precision. We have used this method to compare the abiotic dissolution behavior of a representative calcite (CaCO(3)) cleavage face with that observed upon addition of an environmental microbe, Shewanella oneidensis MR-1, to the crystal surface. From our direct observations, we have concluded that the presence of the microbes results in a significant inhibition of the rate of calcite dissolution. This inhibition appears to be a 2nd-order effect that is related to the formation of etch pits. The opening of etch pits was greatly inhibited in the presence of added bacteria, suggesting that the bacterial cells exert their effect by inhibiting the formation of etch pits at high-energy sites at the crystal surface caused by lattice defects, e.g., screw or point dislocations. The experimental methodology thus provides a nondestructive, directly quantifiable, and easily visualized view of the interactions of microbes and minerals during weathering (or corrosion) processes or during mineral precipitation.     

The transport of fine-grained sediments in shallow waters

Modelling

The transport of fine-grained sediments in shallow waters     

Calcite precipitation and dissolution of biogenic aragonite in shallow Ordovician calcite seas

The Ordovician was a time of extensive and pervasive low-magnesium calcite (LMC) precipitation on shallow marine sea floors. The evidence comes from field study (extensive hardgrounds and other early cementation fabrics in shallow-water carbonate sequences) and petrography (large volumes of marine calcite cement in grainstones). Contemporaneous sea-floor events, particularly relationships with boring and encrusting organisms and reworking in sequences of intraformational conglomerates, confirm the early timing of such LMC cementation, and also of widespread associated aragonite dissolution. Local evidence points to the dissolved aragonite as a significant source of the calcite cement. This scenario, and the fabrics that provide the evidence for it, are likely to be pointers to other times in the stratigraphic record when LMC was the predominant shallow marine precipitate (Calcite Sea times). The combination of rapid calcite precipitation and aragonite dissolution at a time early in the Phanerozoic when many major invertebrate groups were becoming established may have acted as an influence on the evolution of both their skeletal mineralogy and their ecology.     

Genetic control of amino acid transport in sheep erythrocytes

An inherited amino acid transport deficiency results in low concentrations of glutathione (GSH) in the erythrocytes of certain sheep. Earlier studies based on phenotyping according to GSH concentrations indicated that the gene Tr ^H, which controls normal levels of GSH, behaves as if dominant or incompletely dominant to the allele Tr ^h, which controls the GSH deficiency. The present paper shows that when sheep are classified according to amino acid transport activity, the Tr ^H gene behaves as if codominant to Tr ^h. Erythrocytes from sheep homozygous for the Tr ^H gene exhibit rapid saturable l-alanine influx (apparent K _m ,21.6mm; V _max, 22.4 mmol/liter cells/hr). Cells from sheep homozygous for the Tr ^h gene exhibit slow nonsaturable l-alanine uptake (0.55 mmol/liter cells/hr at 50mm extracellular l-alanine). Cells from heterozygous sheep show saturable l-alanine uptake with a diminished V _max (apparent K _m, 19.1mm; V _max, 12.7 mmol/liter cells/hr). These erythrocytes have a significantly lower GSH concentration than cells from Tr ^H, Tr^H sheep but similar intracellular levels of dibasic amino acids.The authors are grateful to the M.R.C. for a Project Grant.     

The directional control of sucrose and asparagine transport in lupin by abscisic acid

Injections of exogenous abscisic acid into the primary flowerhead of Lupinus luteus cv. Weiko III reduced the movement of ¹⁴C-sucrose into the flowerhead from the uppermost leaves. Sucrose transported from below the lateral branches subtending the flowerhead, was diverted into the lateral branches by injection of the exogenous abscisic acid into the flowerhead. ¹⁴C-sucrose was also diverted from a lateral branch injected with exogenous abscisic acid to all other parts of the plant, particularly the main stem and leaves, and the roots. Transport of ¹⁴C-asparagine administered at the cotyledonary node was directed from the flowerhead into the subtending lateral branches by injection of abscisic acid into the flowerhead. Transport of both ¹⁴C-sucrose and ¹⁴C-asparagine into the flowerhead was reduced at least three fold at physiological levels of abscisic acid. No significant correlation was found between the amount of ¹⁴C-asparagine entering a sink and the dry weight of the tissues of that sink. It is concluded that distribution of ¹⁴C-sucrose and ¹⁴C-asparagine between the flowerheads and lateral branches of L. luteus is actively and dynamically controlled and that abscisic acid levels play a significant part in that control. It is suggested that the relative levels of endogenous abscisic acid in plant organs could serve as an important factor in the directional control of assimilate transport in plants.     

Photosynthetic rates in the surface waters of the Red Sea: the radiocarbon versus the non-isotopic dilution method

Experiments carried out on board the research vessel FS ‘Meteor’in the open waters of the Red Sea in July–August 1987showed an apparent underestimation of primary production measuredwith the radiocarbon method. Short-term experiments with dilutedwater samples that estimated the growth rate of phytoplanktonand the grazing rate of herbivorous microzooplankton providedthe means to calculate the primary production. These valueswere compared with those measured simultaneously by means ofthe [¹⁴C]bicarbonate uptake method. The comparison yielded alarger difference between both methods. The radiocarbon valuesamounted to a maximal possible average of only ~12% of the calculatedones.     

Role of interaction zones between surface and ground waters in DOC transport and processing: considerations for river restoration

• 1 A study of dissolved organic carbon (DOC), nitrates and total dissolved phosphorus (TDP) concentrations, conductivity and bacterial numbers was undertaken in subsurface water of the Garonne River (France) under low-flow conditions. The velocity of subsurface flow through a 300-m gravel bar, during this study, was less than 43 m day^?1. DOC, nitrates and TDP concentrations, conductivity and bacterial numbers fluctuated within the gravel bar with no discernible spatial pattern. Bacterial abundance was correlated with DOC concentration. Results were compared to a previous study of the Stillaguamish River (U.S.A.) (Vervier & Naiman, 1992).
• 2 These studies provide evidence that gravel bars are important in the processing of DOC by bacteria in the subsurface water. Bacterial activity is, in turn, determined by sources of DOC from upstream at high discharge, and by patchy local microhabitats at low discharge.
• 3 Restoration of rivers should incorporate, wherever possible, meanders with associated gravel bars and riffles. These will improve DOC-processing capacity, in addition to other benefits predicted by the Building Block Model (Petersen, Petersen & Lacoursière, 1992).

     

Genetic control of amino acid transport inAspergillus nidulans: Evidence for polymeric amino acid permease

On a medium containing either acetate as the sole source of carbon or arginine as the sole source of nitrogen and the two amino acid analogs,p-fluorophenylalanine (FPA) and ethionine, eight FPA-resistant mutants were selected. Dominance tests in heterozygous diploids showed that 3 out of 8 are recessive, 1 semidominant, and 4 dominant to their wild-type alleles. Mutants were characterized by the nature of amino acid transport detected on the basis of amino acid utilization patterns. Six new loci identified after genetic analysis were located on two linkage groups: three each on linkage groups I and II. Recombinants between pairs of locifpaD andfpaQ, andfpaK andfpaP, were found to be sensitive to FPA. The patterns of segregation of resistant markers and amino acid utilization were considered to characterize the specificity of transport mutants.     

Normalizing the thermal effects of radiofrequency radiation: body mass versus total body surface area

The current guideline for exposure to radiofrequency radiation (RFR) was developed through assessment of the biological effects data collected primarily from the rat. The consensus that a lack of hazardous biological effects occurred below a whole-body-averaged specific absorption rate (SAR) of 4.0 W/kg led to the proposition of a 0.4 W/kg guideline with a built-in safety factor of 10. This paper demonstrates that if the RFR absorption rate in the rat had been normalized with respect to total body surface area rather than body mass, the exposure guideline would be 2.3 W/m2, which translates to an SAR of approximately 0.06 W/kg for an adult human. It is further shown that a given RFR absorption rate, normalized as a fraction of a species' heat loss per unit of surface area, is independent of body mass over a range of 0.03-100 kg; however, a normalization of the RFR absorption rate to heat loss per unit of body mass is highly dependent on the species' mass. Normalizing the rate of RFR absorption to the surface area of the rat indicates that the current RFR exposure guideline of 0.4 W/kg may be too high.     

Nonisothermal bioreactors in the treatment of vegetation waters from olive oil: laccase versus syringic acid as bioremediation model

Laccase from Trametes versicolor was immobilized by diazotization on a nylon membrane grafted with glycidil methacrylate, using phenylenediamine as spacer and coupling agent. The behavior of these enzyme derivatives was studied under isothermal and nonisothermal conditions by using syringic acid as substrate, in view of the employment of these membranes in processes of detoxification of vegetation waters from olive oil mills. The pH and temperature dependence of catalytic activity under isothermal conditions has shown that these membranes can be usefully employed under extreme pH and temperatures. When employed under nonisothermal conditions, the membranes exhibited an increase of catalytic activity linearly proportional to the applied transmembrane temperature difference. Percentage activity increases ranging from 62% to 18% were found in the range of syringic acid concentration from 0.02 to 0.8 mM, when a difference of 1 degrees C was applied across the catalytic membrane. Because the percentage activity increase is strictly related to the reduction of the production times, the technology of nonisothermal bioreactors has been demonstrated to be an useful tool also in the treatment of vegetation waters from olive oil mills.     

The role of particulate matter in the productivity of surface waters

Except for the special cases of upwelled water and the spring blooms in temperate and boreal waters, the productivity of the oceans is largely governed by the rate of nutrient regeneration in surface waters. This rate of regeneration is a function of the number of actively metabolizing bacteria present, which in turn appears to be a function of the particle content of the water. Thus, particle content may be the basic control on the productivity of the open oceans. The possibility of increasing productivity by artificially increasing the particle content of the water should be considered for regions characterized by low particle count, such as the Sargasso Sea. Since silicate can only be resupplied by re-solution of diatom tests, a process taking place at depth, plankton blooms following regeneration kinetics will typically be dinoflagellate rather than diatom blooms.     

Kinetics of antigen binding to antibody microspots: strong limitation by mass transport to the surface

It is well documented that diffusion has generally a strong effect on the binding kinetics in the microtiter plate immunoassays. However, a systematic quantitative experimental evaluation of the microspot kinetics is still missing in the literature. Our work aims at filling this important gap of knowledge on the example of antigen binding to antibody microspots. A mathematical model was derived within the framework of two-compartment model and applied to the quantitative analysis of the experimental data obtained for typical antibody microspot assays. A strong mass-transport dependence of the antigen-antibody microspot kinetics was identified to be one of the main restrictions of this new technology. The binding reactions are slowed down in the microspot immunoassays by several orders of magnitude as compared with the corresponding well-stirred bulk reactions. The task to relax the mass-transport limitations should thus be one of the most important issues in designing the antibody microarrays. These limitations notwithstanding, the detection range of more than five orders of magnitude and the high sensitivity in the low femtomolar range were experimentally achieved in our study, demonstrating thus an enormous potential of this highly capable technology.     

Functional molecular mass of the 14C-azidobenzamidotaurocholic acid binding proteins in hepatocellular bile acid transport systems.

The apparent target size of 14C-azidobenzamidotaurocholate binding proteins in basolateral rat liver plasma membranes (blPm) was determined by analysis of the radiation induced decrease of the binding of this photoreactive taurocholate analog to blPm. Radiation causes a dose-dependent mono-exponential reduction of binding of ABATC to the protein subunits with molecular masses of 48-50 and 52-54 kDa in SDS-PAGE. The minimal functional molecular mass of the 48-50 and 52-54 kDa ABATC binding proteins was determined to be 99 +/- 8.2 and 93.2 +/- 7 kDa, respectively.