The redfish species Sebastes viviparus, Sebastes marinus and Sebastes mentella have different composition of their tissue fatty acids

The fatty acid profile in the tissue of heart, gill, skull- and otolith-oil of the three redfish species, Sebastes viviparus, S. marinus and S. mentella was determined by a chemometric method, consisting of methanolysis of samples of the tissues and of the oils and gas chromatography of the resulting fatty acid methyl esters. The analytical data were treated by multivariate statistics comprising principal component analysis (PCA) and soft independent modeling of class analogy (SIMCA). Although the differences in fatty acid composition among the two tissues and two oils were the dominating features of the data, the three species had significantly different fatty acid profiles within each tissue. Variation among the individuals was considerable. The fatty acid profiles appeared to be species specific. The mutual relationship between S. marinus and S. mentella is closer than the relationship between either of them and S. viviparus. A comparison with a corresponding investigation on the same three species from another location indicates that the observed differences do not seem to be affected by biotic or abiotic factors.     

Geometric morphometrics reveals body shape differences between sympatric redfish Sebastes mentella, Sebastes fasdatus and their hybrids in the Gulf of St Lawrence

Significant body shape differences were observed between two commercially important redfish species Sebastes fasdatus and Sebastes mentella , in the Gulf of St Lawrence, first classified according to the variability at the MDH-A* locus, a diagnostic criterion for the two species in allopatry. The observed sexual dimorphism was probably related to the presence of gravid females in the sample. Sebastes mentella appeared to be more fusiform than S. fasdatus , a characteristic that may reflect the more pelagic behaviour of S. mentella . The body shape of their hybrids was closer to that of S. mentella . Similarities between hybrids and S. mentella were also observed for meristic characteristics and depth distribution. The implications of these similarities for introgression are discussed. Body shape variability of specimens of hybrid origin was greater than that of either parental species, with features ranging from S. mentella-like to S. fasciatus -like. The role of introgression in generating morphological variability is emphasized.     

Growth Properties in Redfishes of the Genus Sebastes on the Flemish Cap Bank

Journal of Ichthyology - This article analyzes the dynamics of the linear growth rate for three redfish species of the genus Sebastes on the Flemish Cap bank: beaked redfish S. mentella, golden...     

Genetic variation of Sebastes viviparus Krøyer in the North Atlantic

As part of a more extensive study on the inter- and intraspecific genetic variation of redfish, genus Sebastes , a total sample of 593 individuals of the species Sebastes viviparus were collected from several locations in Norwegian waters and off the south-west coast of Iceland. Haemoglobin and five polymorphic enzymes were analysed. A new haemoglobin polymorphism was observed, and unique alleles were found in Icelandic and Norwegian samples. The results of the enzyme analyses were largely consistent with previous results, but interpopulation variation was observed in the frequencies of IDHP * and Hb * alleles. S. viviparus displayed higher similarity with S. fasciatus from the West Atlantic than with the other Sebastes species.     

Ecological and Population Features of Beaked Redfish Sebastes mentella (Sebastidae) in the Northwest Atlantic Based on the Analysis of Its Parasite Fauna

Journal of Ichthyology - The results of studying the composition and features of the ecology, zoogeography, and formation of the parasite fauna of beaked redfish Sebastes mentella in the waters of...     

Temporal variation and feeding ecology of juvenile Sebastes in rocky intertidal tidepools of northern California, with emphasis on Sebastes melanops Girard

This study examined the seasonal use of rocky intertidal areas by young-of-the-year (YOY) Sebastes spp. at three locations in northern California, 2003 to 2005. Six species of Sebastes were noted during the study with black rockfish Sebastes melanops comprising >99% of the total number sampled. Sebastes melanops were noted in rocky intertidal areas from May to August with peak abundances occurring in May or June. Variation in recruitment and feeding was evident among years. Diet analysis, using the index of relative importance (% I _RI) and the modified index (% I _M), showed that YOY S. melanops and Sebastes mystinus consumed a variety of prey items with harpacticoid copepods and gammaridean amphipods being the dominant prey categories. The rocky intertidal appears to serve as an important habitat for YOY S. melanops in northern California.     

Comparative study on the surface ultrastructures of fertilized eggs of three Sebastes species

Fertilized eggs of Sebastes schlegelii, Sebastes pachycephalus and Sebastes hubbsi are morphologically similar under stereomicroscope. However, under the scanning electron microscope, significant differences in the ultrastructures of the egg surface among the three species were observed, and herein, a taxonomic key was proposed for future applications. A clustering analysis based on the ultrastructures of the egg surface and the diameter of the oil globule suggested that among the three species, S. hubbsi and S. pachycephalus were more genetically similar, while S. schlegelii had diverged earlier. The results agree with the conclusions drawn from morphological and molecular analyses on adult samples of the same species.     

Parasites and Maturation Rate as Indicators of Population Structure in the Beaked Redfish Sebastes mentella (Sebastidae)

Journal of Ichthyology - The direction of phylogenesis of beaked redfish Sebastes mentella is considered based on a comparative analysis of the parasite fauna and maturation rate of individuals in...     

New Data on the Distribution of Beaked Redfish Sebastes mentella (Sebastidae) in the Greenland Sea

Journal of Ichthyology - The ichthyological studies carried out at the shelf of North-Eastern Greenland in 2002–2017 new regions of dwelling of beaked redfish Sebastes mentella were...     

Evidence for broadscale introgressive hybridization between two redfish (genus Sebastes) in the North-west Atlantic: a rare marine example

The evolutionary importance of introgressive hybridization has long been recognized by plant evolutionists, and there is now a growing recognition for its potential role in animals as well. Detailed empirical investigations of this evolutionary process, however, are still lacking in many animal groups, particularly in the marine environment. Using integrated microsatellite DNA data (eight loci analysed over 803 individuals representing 17 sampling locations) and multivariate statistical procedures (principal component, factorial correspondence and admixture proportion analyses), we: (i) provide a detailed dissection of the dynamics of introgressive hybridization between Sebastes fasciatus and S. mentella, two economically important redfishes from the North-west Atlantic; and (ii) infer the factors potentially involved in the maintenance of the hybrid zone observed in the gulf of St. Lawrence and south of Newfoundland. This study provided one of the rare examples of extensive introgressive hybridization in the ocean, and highlighted the predominant role of this process in shaping the extent of genetic diversity, interspecific differences and population structuring among redfishes from the North-west Atlantic. The extensive (average rate of introgression = 15%) but geographically circumscribed and asymmetrical pattern of introgressive hybridization, the sympatric persistence of two reproductively isolated introgressed groups, the differential patterns of linkage disequilibrium among samples, and the maintenance of genetic integrity of both species outside the defined zone of introgression despite high potential for gene flow, all implicated selection in promoting and maintaining the observed pattern of introgression.     

Neutral lipid fatty acid composition as trait and constraint in Collembola evolution

Functional traits determine the occurrence of species along environmental gradients and their coexistence with other species. Understanding how traits evolved among coexisting species helps to infer community assembly processes. We propose fatty acid composition in consumer tissue as a functional trait related to both food resources and physiological functions of species. We measured phylogenetic signal in fatty acid profiles of 13 field‐sampled Collembola (springtail) species and then combined the data with published fatty acid profiles of another 24 species. Collembola fatty acid profiles generally showed phylogenetic signal, with related species resembling each other. Long‐chain polyunsaturated fatty acids, related to physiological functions, demonstrated phylogenetic signal. In contrast, most food resource biomarker fatty acids and the ratios between bacterial, fungal, and plant biomarker fatty acids exhibited no phylogenetic signal. Presumably, fatty acids related to physiological functions have been constrained during Collembola evolutionary history: Species with close phylogenetic affinity experienced similar environments during divergence, while niche partitioning in food resources among closely related species favored species coexistence. Measuring phylogenetic signal in ecologically relevant traits of coexisting species provides an evolutionary perspective to contemporary assembly processes of ecological communities. Integrating phylogenetic comparative methods with community phylogenetic and trait‐based approaches may compensate for the limitations of each method when used alone and improve understanding of processes driving and maintaining assembly patterns.     

The complete mitochondrial genome of the rockfish Sebastes schlegeli (Scorpaeniformes, Scorpaenidae)

We isolated rockfish Sebastes schlegeli mitochondrial DNA by long-polymerase chain reaction (Long-PCR) with conserved primers, and sequenced it by primer walking using flanking sequences as sequencing primers. S. schlegeli mitochondrial DNA consists of 16,526 bp and its structural organization is conserved in comparison with other fish. Using mitochondrial control region sequences, we compared related species from the genus Sebastes (Scorpaeniformes, Scorpaenidae), showing the similarity of S. schlegeli isolated from Korean and Japanese waters. In this paper, we report the basic characteristics of the S. schlegeli mitochondrial genome including structural organization, base composition of rRNAs and the tRNAs and protein-encoding genes, and characteristics of mitochondrial tRNAs. These findings are applicable to aquaculture and to molecular phylogenetics in the genus Sebastes.     

Cryptic species of rockfishes (Sebastes: Scorpaenidae) in the southern hemisphere inferred from mitochondrial lineages.

We used mitochondrial DNA sequence variation of Sebastes from the southeastern Pacific and three localities in the South Atlantic to address long-standing systematic and evolutionary issues regarding the number of species in the Southern Hemisphere. Sequences of the hypervariable mitochondrial control region were obtained from 10 specimens of S. capensis from South Africa (n = 5) and from Tristan da Cunha Island (n = 5) and 27 of S. oculatus from Valparaiso, Chile (n = 10), and the Falkland Islands (n = 17). Results of the study include (1) significant levels of genetic differentiation among the sampled populations (phi ST = 0.225, P < .000001), thus indicating limited gene flow; (2) corroboration of the existence of two different lineages of austral Sebastes corresponding to S. capensis and S. oculatus; (3) finding that S. capensis is not restricted to Tristan da Cunha and South Africa, but is widespread across the South Atlantic; (4) the position of S. capensis as the ancestral lineage of the austral Sebastes; (5) the existence of a third evolutionary lineage with high levels of genetic divergence, particularly abundant in the south-western Atlantic, which may be recognized as a third austral species of Sebastes.     

Measuring soil microbial community diversity using polar lipid fatty acid and denaturing gradient gel electrophoresis data

The possibility of calculating useful microbial community diversity indices from environmental polar lipid fatty acid and 16S rDNA PCR-DGGE data was investigated. First, the behavior of the species richness, Shannon's, and Simpson's diversity indices were determined on polar lipid fatty acid profiles of 115 pure cultures, communities constructed from those profiles with different numbers of species, and constructed communities with different distributions of species. Differences in the species richness of these artificial communities was detected by all three diversity indices, but they were insensitive to the evenness of the distribution of species. Second, data from a field experiment with substrate addition to soil was used to compare the methods developed for lipid- and DNA-based diversity indices. Very good agreement was found between indices calculated from environmental polar lipid fatty acid profiles and denaturing gradient gel electrophoresis profiles from matched samples (Pearson's correlation coefficient r=0.95-0.96). A method for data pre-treatment for diversity calculations is described.     

Specificity in the accumulation of fatty acids in adipose tissue of mammals

To investigate possible differences in triacylglyceride accumulation in adipose tissue, six different species have been studied (hamster, mouse, rat, rabbit, dog and pig). They were fed the same diet of high proportion of saturated fatty acids during 3 months after the lactation period. There are significant differences between the fatty acids in the diet and the studied tissue, a higher proportion of myristic, palmitoleic and linoleic acids together with a minor proportion of palmitic and stearic acids being accumulated in all studied species except in pig. The differences among species were significant in most cases being maximal in pig (57.7% of saturated fatty acids) and hamster (24.4% of saturated fatty acids). There is a direct relationship between the position of each fatty acid in the triacylglyceride and its proportion in the tissue, this proportion being maximal when the fatty acid is placed on position 2 in the triacylglycerides. There is also a relationship between the different position in the phylogenetic scale of each studied species and the differential fatty acid composition. All these data suggest that there are specific mechanisms involved in the fatty acids accumulation on the adipose tissue. The position of the different fatty acids in the triacylglyceride studied could be a part of this mechanism.     

Taxonomic review of the Sebastes vulpes complex (Scorpaenoidei: Sebastidae)

Ichthyological Research - A taxonomic review of the Sebastes vulpes complex (S. vulpes, S. zonatus and S. ijimae) established the existence of two valid species, Sebastes vulpes Döderlein in...     

Genomic characterization of sex‐identification markers in Sebastes carnatus and Sebastes chrysomelas rockfishes

Fish have evolved a variety of sex‐determining (SD) systems including male heterogamy (XY), female heterogamy (ZW) and environmental SD. Little is known about SD mechanisms of Sebastes rockfishes, a highly speciose genus of importance to evolutionary and conservation biology. Here, we characterize the sex determination system in the sympatrically distributed sister species Sebastes chrysomelas and Sebastes carnatus. To identify sex‐specific genotypic markers, double digest restriction site – associated DNA sequencing (ddRAD‐seq) of genomic DNA from 40 sexed individuals of both species was performed. Loci were filtered for presence in all of the individuals of one sex, absence in the other sex and no heterozygosity. Of the 74 965 loci present in all males, 33 male‐specific loci met the criteria in at least one species and 17 in both. Conversely, no female‐specific loci were detected, together providing evidence of an XY sex determination system in both species. When aligned to a draft reference genome from Sebastes aleutianus, 26 sex‐specific loci were interspersed among 1168 loci that were identical between sexes. The nascent Y chromosome averaged 5% divergence from the X chromosome and mapped to reference Sebastes genome scaffolds totalling 6.9Mbp in length. These scaffolds aligned to a single chromosome in three model fish genomes. Read coverage differences were also detected between sex‐specific and autosomal loci. A PCR‐RFLP assay validated the bioinformatic results and correctly identified sex of five additional individuals of known sex. A sex‐determining gene in other teleosts gonadal soma‐derived factor (gsdf) was present in the model fish chromosomes that spanned our sex‐specific markers.     

Tissue specific differences in the fatty acid composition of the marmoset monkey (Callithrix jacchus)

1. The possible relationship between the fatty acid composition of the adipose tissue of the marmoset monkey (Callithrix jacchus) and its dietary lipid intake was examined after a long-term feeding trial. 2. Only the proportions of stearic and linoleic acid in the adipose tissue were similar to those in the diet. The proportions of all other saturated and unsaturated fatty acid components were significantly different thus greatly reducing the potential value of this relationship in the marmoset. 3. The phospholipid fatty acid profiles of cardiac and skeletal muscle, aortae, kidney, liver, lung and brain were also compared to those of the plasma, platelets or red blood cells. 4. With the exception of the liver where the fatty acid profile is similar to that of the plasma, no clear relationships were found between the fatty acid profiles of these tissues and the components of the blood. 5. The fatty acid composition of skeletal muscle was very similar to that of the cardiac muscle of the marmoset, suggesting that muscle biopsy might be useful as an index of cardiac muscle composition.     

Taxonomic review of the <Emphasis Type="Italic">Sebastes inermis</Emphasis> species complex (Scorpaeniformes: Scorpaenidae)

A taxonomic review of three color morphotypes of the Sebastes inermis species complex established the existence of three valid species, viz. S. inermis, S. ventricosus, and S. cheni. The complex is defined by having two sharp lachrymal spines, the head weakly armed with nasal, preocular, supraocular and parietal spines, and the caudal fin not distinctly emarginated. Sebastes inermis, known from southern Hokkaido southward to Kyushu, Japan, and the southern part of the Korean Peninsula, is characterized as follows: body dark red or light brown dorsally and laterally when fresh, pectoral fin extending beyond level of anus when depressed, pectoral-fin rays 15, anal-fin rays 7, pored lateral line scales 36–44 and gill rakers 31–37. Sebastes ventricosus, known from Iwate and Ishikawa Prefecture southward to Kyushu, Japan, and the southern part of the Korean Peninsula, is characterized as follows: body somewhat greenish-black dorsally and dark silver ventrally when fresh, pectoral-fin rays 16, anal-fin rays 7–8, pored lateral line scales 43–49, and gill rakers 35–39. Sebastes cheni, known from Iwate and Akita Pref. southward to Kyushu, Japan, and the southern part of the Korean Peninsula, is characterized as follows: body dark golden-brown dorsally and laterally when fresh, pelvic fin extending beyond anus when depressed, pectoral-fin rays 17, anal-fin rays 8, pored lateral line scales 37–46 and gill rakers 32–37. In the genetic analysis, the presence or absence of two AFLP fragments was completely fixed among the three species. Sebastes tokionis and S. guentheri are regarded as junior synonyms of S. inermis and S. ventricosus, respectively. A lectotype is designated for S. cheni, and a key to the three species of the S. inermis species complex provided.