环梅山岛海域春季浮游古菌群落空间分布特征研究

[目的]海洋浮游古菌是生物地球化学循环的关键驱动者,但其在近岸海域的水平空间分布特征还未被充分了解.本研究以与陆地紧密相连的环梅山岛海域为例研究浮游古菌在海陆过渡带的水平分布模式.[方法]利用16S rRNA基因扩增子测序,以期从优势类群分布、群落组成变化和物种共现模式3个层面揭示梅山湾潟湖区和临近海域春季浮游古菌的空...     

The diversity,abundance and fate of ice algae and phytoplankton in the Bering Sea

Despite being an essential part of the marine food web during periods of ice cover, sea ice algae have not been studied in any detail in the Bering Sea. In this study, we investigated the diversity, abundance and ultimate fate of ice algae in the Bering Sea using sea ice, water and sub-ice sediment trap samples collected during two spring periods in 2008 and 2009: ice growth (March–mid-April) and ice melt (mid-April–May). The total ice algal species inventory included 68 species, dominated by typical Arctic ice algal diatom taxa. Only three species were determined from the water samples; we interpret the strong overlap in species as seeding of algal cells from the sea ice. Algal abundances in the ice exceeded 10⁷ cells l^?1 in the bottom 2-cm layer and were on average three orders of magnitude higher than in the water column. The vertical flux of algal cells beneath the ice during the period of ice melt (>10⁸ cells m^?2 day^?1) exceeded export during the ice growth period by one order of magnitude; the vertical flux during both periods can only be sustained by the release of algae from the ice. Differences in the relative species proportions of algae among sample types indicated that the fate of the released ice algae was species specific, with some taxa contributing to seeding in the water column, while other taxa were preferentially exported.     

PHYTOPLANKTON OF THE SUSQUEHANNA RIVER NEAR BINGHAMTON,NEW YORK: SEASONAL VARIATIONS; EFFECT OF SEWAGE EFFLUENTS1,2

Net phytoplankton samples were collected weekly for 13 months at points above and below sewage effluents. Sixty-three genera and 130 taxa were identified: diatoms, 19 genera, 44 taxa; greens, 31 genera, 67 taxa; blue-greens, 6 genera, 8 taxa. Downstream from the sewage effluents the number of taxa was unchanged but the number of organisms was definitely increased. This increase was most pronounced for green and blue-green algae, and least for diatoms. The seasonal distribution of algae was that usually seen in waters of the North Temperate Zone. The particular taxa and number of taxa found were those of productive waters but not typical of heavily polluted waters.     

Physical factors and dissolved reactive silica affect phytoplankton community structure and dynamics in a lowland eutrophic river (Po river,Italy)

We tested the hypothesis that species composition and persistence of phytoplankton communities in nutrient rich lowland rivers depends mainly on physical factors. The study aimed to analyse the effects of water discharge, temperature and chemistry on phytoplankton dynamic and species composition in the lowland reach of the eutrophic Po river (Italy). Both taxonomical and morpho-functional methods were used. True planktonic and tychoplanktic (i.e. detached taxa of benthic origin that remain in suspension) species were found, among which only a few taxa and functional groups prevailed. Diatoms were the most abundant, with a clear dominance of species either sensitive to the onset of water stratification or well adapted to turbid waters. Phytoplankton abundance, biomass and chlorophyll-a followed similar trends, attaining the highest values in summer, at low discharge rates. Correlation and multivariate analysis revealed that the development of a stable phytoplankton community was mainly controlled by water discharge rates. Namely, changes in water flow rates induced major variations in the community structure. The seasonal succession of phytoplankton assemblages was also related to water temperature and dissolved reactive silica availability to some extent overlapping flow effects.     

Diversity and distribution of Tubificidae, Naididae, and Lumbriculidae (Annelida: Oligochaeta) in the Netherlands: an evaluation of twenty years of monitoring data

Data from 24 water management districts and the rivers Rhine and Meuse in the Netherlands were used to study geographical distribution, relative occurrence, and environmental requirements of 76 aquatic oligochaetes (families Tubificidae, Naididae, and Lumbriculidae) (Annelida, Clitellata). Approximately 50% of the 76 species that occur in the Netherlands are uncommon, rare, or very rare. The other half of the species are common, very common or abundant. The abundant species are: Stylaria lacustris, Ophidonais serpentina, Limnodrilus claparedeianus, Limnodrilus hoffmeisteri, and Lumbriculus variegatus. With the exception of several brackish water species (those restricted in distribution to water management districts close to the sea that are influenced by salt water influx) and specific running water species (restricted mainly to the eastern part of the Netherlands), most of the species occurred throughout the whole Netherlands. The species distribution was related to environmental variables using ordination. In general, species distribution was correlated with either large waters with high chloride and phosphorus concentrations and a high hydrogen ion concentration (as pH), or with small forested (running) waters in more natural (undeveloped) areas that occasionally become intermittent. Vegetation cover was positively correlated with several swimming species in the family Naididae. While the distribution of aquatic oligochaetes in some families occurring in the Netherlands is known to some extent, the occurrence and distribution of rare and small taxa, particularly those that are difficult to identify taxonomically, is virtually unknown. Some of the rare oligochaete taxa, especially those associated with unique habitats, have received only cursory attention. Also in the data studied, the observations of the more rare species were too few to draw conclusions. To improve our knowledge of oligochaete distribution in the Netherlands, additional research should focus on rare species associated with special habitats and water types (natural areas) and those taxa in poorly known families. The standardisation of sampling and processing methodologies, particularly the use of nets and sieves with fine-meshed screening, will ensure the collection of the smaller species of oligochaetes. Subsequently, oligochaetes should be identified to species level by experienced taxonomists trained in oligochaete identification. Finally, many aquatic oligochaete species are identifiable only when sexually mature and therefore the time of year in which samples are collected is critical to the accurate representation of true oligochaete diversity at any given site. For analysing the relation between species and environmental variables the best option is to use composite data from spring and autumn.     

Occurrence of Cryptosporidium spp. oocysts in raw and treated sewage and river water in north-eastern Spain

AIMS: To determine the occurrence and levels of Cryptosporidium parvum oocysts in wastewater and surface waters in north-eastern Spain. METHODS AND RESULTS: Samples from five sewage treatment plants were taken monthly and quarterly during 2003. In addition, water was collected monthly from the River Llobregat (NE Spain) during the period from 2001 to 2003. All samples were analysed by filtration on cellulose acetate filters or through Envirocheck using EPA method 1623, followed by immunomagnetic separation and examination by laser scanning cytometry. All raw sewage, secondary effluent and river water samples tested were positive for Cryptosporidium oocysts. Of the tertiary sewage effluents tested, 71% were positive for Cryptosporidium oocysts. The proportion of viable oocysts varied according to the sample. CONCLUSIONS: Two clear maxima were observed during spring and autumn in raw sewage, showing a seasonal distribution and a correlation with the number of cryptosporidiosis cases and rainfall events. SIGNIFICANCE AND IMPACT OF THE STUDY: This study provides the first data on the occurrence of Cryptosporidium oocysts in natural waters in north-eastern Spain.     

COASTAL DIATOM–ENVIRONMENT RELATIONSHIPS FROM THE GULF OF FINLAND,BALTIC SEA1

Eutrophication of the Baltic Sea has become a serious concern in recent decades. To provide a potential means for quality assessments of coastal waters in this area, we collected a data set of 49 embayments in the Gulf of Finland, and explored the relationship between surface sediment diatom assemblages and 15 environmental variables, with special emphasis on nutrients. Total dissolved nitrogen, total phosphorus, depth, and salinity all accounted for significant and independent fractions of variation in the diatom data and explained 34% of the total variation. There were clear changes in diatom assemblage structures along the nutrient gradients. Although these changes were gradual, we could identify a number of taxa that were more abundant in a particular nutrient environment. These taxa could be used as potential indicators of the quality of coastal waters in the Baltic Sea. Diatom assemblages that were least affected by nutrient enrichment included a variety of benthic species and a relatively high species richness. Small planktonic taxa such as Cyclotella atomus Hustedt, Cyclotella meneghiniana Kützing and Thalassiosira pseudonana Hasle and Heimdal were good indicators of highly elevated nutrient concentrations (>600 lg·L^?1 total dissolved nitrogen and 60 lg·L^?1 total phosphorus) together with low species richness. The first appearance of these small planktonic taxa in regular monitoring could be used as an early warning sign for deteriorating water quality. Diatoms could be applied to water quality classification and monitoring purposes in the coastal waters of the Baltic Sea area using techniques such as weighted‐averaging regression and calibration.     

Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean

The abundance, spatial distribution and diversity of class Flavobacteria were investigated in the Southern Ocean euphotic zone across a latitudinal transect and in the ice pack off Eastern Antarctica. Surface seawater samples filter-fractionated into 0.8 mum particulate and 0.2 m planktonic fractions were investigated with different molecular techniques. The abundance of particle-associated Flavobacteria, ascertained with real-time PCR and DGGE band analysis using Flavobacteria-specific primers, was found to be significantly higher in Polar Front Zone (PFZ) and Antarctic Zone (AZ) water samples than in nutrient limited Temperate Zone (TZ) and Sub-Antarctic Zone (SAZ) waters. Abundance of particle-associated Flavobacteria correlated positively with seawater chlorophyll a and nutrient concentrations, suggesting that increased Flavobacteria abundance may relate to enhanced primary production in the PFZ and AZ. This is supported by comparison of DGGE profiles that demonstrated significant differences in the total Flavobacteria community structure and 16S rRNA gene diversity between samples from the PFZ and AZ and those from TZ and SAZ. Sequence analysis revealed a broad diversity amongst class Flavobacteria in the Southern Ocean with several Flavobacteria clades detected in PFZ and AZ waters not detected in TZ and SAZ waters that putatively represent psychrophilic taxa. Sequence data included a large, so far uncultivated, cosmopolitan phylogenetic clade ("DE cluster 2") that is distributed throughout the Southern Ocean.     

Molecular diet analysis in mussels and other metazoan filter feeders and an assessment of their utility as natural eDNA samplers

Molecular gut content analysis is a popular tool to study food web interactions and has recently been suggested as an alternative source for DNA-based biomonitoring. However, the overabundant consumer's DNA often outcompetes that of its diet during PCR. Lineage-specific primers are an efficient means to reduce consumer amplification while retaining broad specificity for dietary taxa. Here, we designed an amplicon sequencing assay to monitor the eukaryotic diet of mussels and other metazoan filter feeders and explore the utility of mussels as natural eDNA samplers to monitor planktonic communities. We designed several lineage-specific rDNA primers with broad taxonomic suitability for eukaryotes. The primers were tested using DNA extracts of different limnic and marine mussel species and the results compared to eDNA water samples collected next to the mussel colonies. In addition, we analysed several 25-year time series samples of mussels from German rivers. Our primer sets efficiently prevent the amplification of mussels and other metazoans. The recovered DNA reflects a broad dietary preference across the eukaryotic tree of life and considerable taxonomic overlap with filtered water samples. We also show the utility of a reversed version of our primers, which prevents amplification of nonmetazoan taxa from complex eukaryote community samples, by enriching fauna associated with the marine brown algae Fucus vesiculosus. Our protocol will enable large-scale dietary analysis in metazoan filter feeders, facilitate aquatic food web analysis and allow surveying of aquacultures for pathogens. Moreover, we show that mussels and other aquatic filter feeders can serve as complementary DNA source for biomonitoring.     

Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound

Non-native marine species have been and continue to be introduced into Puget Sound via several vectors including ship's ballast water. Some non-native species become invasive and negatively impact native species or near shore habitats. We present a new methodology for the development and testing of taxon specific PCR primers designed to assess environmental samples of ocean water for the presence of native and non-native bivalves, crustaceans and algae. The intergenic spacer regions (IGS; ITS1, ITS2 and 5.8S) of the ribosomal DNA were sequenced for adult samples of each taxon studied. We used these data along with those available in Genbank to design taxon and group specific primers and tested their stringency against artificial populations of plasmid constructs containing the entire IGS region for each of the 25 taxa in our study, respectively. Taxon and group specific primer sets were then used to detect the presence or absence of native and non-native planktonic life-history stages (propagules) from environmental samples of ballast water and plankton tow net samples collected in Puget Sound. This methodology provides an inexpensive and efficient way to test the discriminatory ability of taxon specific oligonucleotides (PCR primers) before creating molecular probes or beacons for use in molecular ecological applications such as probe hybridizations or microarray analyses. This work addresses the current need to develop molecular tools capable of diagnosing the presence of planktonic life-history stages from non-native marine species (potential invaders) in ballast water and other environmental samples.     

Genetic diversity and molecular detection of three toxic dinoflagellate genera (Alexandrium,Dinophysis, and Karenia) from French coasts

The objectives of this study were 1) to study the genetic diversity of the Alexandrium, Dinophysis and Karenia genera along the French coasts in order to design probes targeting specific DNA regions, and 2) to apply PCR-based detection to detect these three toxic dinoflagellate genera in natural samples. Genetic diversity of these toxic taxa was first studied from either cultures or cells isolated from Lugol-fixed field samples. By this way, partial sequences of the large ribosomal subunit (LSU rDNA) including the variable domains D1 and D2 of A. minutum, Alexandrium species inside the tamarensis complex, the D. acuminata complex and K. mikimotoi were obtained. Next, specific primers were designed for a selection of toxic algae and used during semi-nested PCR detection. This method was tested over a 3-month period on water samples from the Bay of Concarneau (Brittany, France) and on sediment from the Antifer harbor (The English Channel, France). Specificity and sensitivity of this molecular detection were evaluated using the occurrence of target taxa reported by the IFREMER (Institut Fran?ais de Recherche pour l'Exploitation de la Mer) monitoring network based on conventional microscopic examination. This work presents the first results obtained on the biogeographical distribution of genotypes of these three toxic genera along the French coasts.     

The occurrence of aerolysin-positive Aeromonas spp. and their cytotoxicity in Norwegian water sources

Aims:  The aim of the study was to investigate the occurrence of Aeromonas spp. and their aerolysin status in Norwegian natural water sources.
Methods and Results:  Seventy-one samples from 33 Norwegian water sources were examined for the presence of Aeromonas spp. From most of the sample sites, the strains were isolated on blood-ampicillin-agar and Difco Aeromonas agar simultaneously. The majority of the samples (73/77) contained Aeromonas spp., with an average of 35–100 cfu 100 ml^–1. The highest counts were found in faecally-contaminated water. Using PCR, 445 isolates were screened for the presence of aerolysin, and 79% of them were found to be carriers of the aerolysin gene. A selection of the isolated strains was tested on Vero cell cultures and 83% of them showed cytotoxicity.
Conclusions:  There is widespread occurrence of aerolysin-positive cytotoxic Aeromonas spp. in many different Norwegian natural waters, including drinking water sources.
Significance and Impact of the Study:  The widespread occurrence of potentially-pathogenic Aeromonas spp. in the environment demands that these bacteria should not be ignored in drinking water supplies and in the food industry.     

The ecology of algae in the Moruya river,Australia

The standing crop of benthic and planktonic algae in the Moruya River, Australia, was, in general, low compared with values given for northern hemisphere rivers. Diatoms always accounted for more than 90% of the algae on the sediments with the most common species being typical of holarctic flora. The relative abundance of each of six predominant taxa was similar at the three sampling localities and did not show marked seasonal variation. However, Gomphonema spp. contributed a relatively greater number in the downstream area whereas Cocconeis placentula Ehr. was comparatively more abundant upstream. The highest standing crop (1.47 × 10⁶ cells/cm²) was found downstream and in the calmest part of the river between January and March, coincident with maximum water temperatures. A true phytoplankton succession comprising filamentous chlorophytes, Scenedesmus, Melosira varians Ag., Dactylococcopsis, Eudorina and Merismopedia was observed at the most downstream site during the spring and summer, with a maximum standing crop of 126.7 × 10³ cells/litre being attained in December. The gut of larval lampreys > 100 mm contained large numbers (44,000–525,000 cells) of algae. Scenedesmus and Dactylococcopsis occurred much more frequently in the gut than in either the sediment or water, but the reverse was true for filamentous algae.     

Distribution and community structure of Ostracoda (Crustacea) in shallow waterbodies of southern Kenya

The current study presents the ostracod communities recovered from 26 shallow waterbodies in southern Kenya, combined with an ecological assessment of habitat characteristics. A total of 37 waterbodies were sampled in 2001 and 2003, ranging from small ephemeral pools to large permanent lakes along broad gradients in altitude (700–2 800 m) and salinity (37–67 200 µS cm^?1). Between 0 and 12 species were recorded per site. Lack of ostracods was associated with either hypersaline waters, or the presence of fish in fresh waters. Three of the 32 recovered ostracod taxa, Physocypria sp., Sarscypridopsis cf. elizabethae and Oncocypris mulleri, combined a wide distribution with frequent local dominance. Canonical correspondence analysis on species–environment relationships indicated that littoral vegetation, altitude, surface water temperature and pH best explain the variation in ostracod communities. Presence of fish and water depth also influence species occurrence, with the larger species being more common in shallow waterbodies lacking fish. Based on Chao’s estimator of total regional species richness, this survey recovered about two-thirds (60–68%) of the regional ostracod species pool. Scanning electron micrographs (SEM) of the valve morphology of 14 ostracod taxa are provided, in order to facilitate their application in biodiversity and water-quality assessments and in palaeoenvironmental reconstruction.     

Response to nutrient enrichment by the plankton of Antarctic coastal lakes and the inshore Ross Sea

Summary Water samples from coastal lakes and ponds on Ross Island (77°S) and from the adjacent Ross Sea were analyzed to determine nutrient supply relative to the population size of planktonic algae and bacteria. An enrichment test was applied to each water to measure N and P accumulation by the seston as a guide to nutrient demand and deficiency. In all waters, including the sea, the dissolved inorganic N-to-P ratios were low, but inorganic nitrogen was generally present at concentrations that satisfied or exceeded the current growth requirements of the algae. None of the samples responded to added P, and only 3 of the 13 plankton assemblages tested responded positively to nitrogen enrichment. These waters are therefore characterized by an abundance of resources relative to demand. This apparently r-selecting coastal environment contrasts markedly in many ecosystem properties with the inland meromictic lakes of Antarctica.     

三峡水库神农溪2014年春季浮游藻类演替成因分析

摘要：【目的】研究三峡水库神农溪库湾春季水华期间浮游藻类演替及其成因分析。【方法】2014年3–5月在神农溪库湾布置了6个断面(SN01–SN06),在神农溪汇入长江干流河口附近水域设置1个断面CJBD,对浮游藻类、相关环境因子及水动力因子进行了同步监测,据此分析了水体层化结构及水动力特性。【结果】神农溪在监测时段内共检测到浮游藻类6门38种(属);库湾浮游藻类生物量时间上差异显著(ANOVA,P<0.05)。春季浮游藻类群落结构具有明显的演替规律,3月份暴发大面积的硅藻水华（藻密度>100×105 cells/L),小环藻(Cyclotella spp.)为优势藻种;4月在SN02–SN06暴发以小球藻(Chlorella spp.)为主要优势种、衣藻(Chlamydomonas spp.)为次优势种的绿藻水华(藻密度>100×105 cells/L),5月份受水位大幅消落影响,浮游藻类生物量降低且无明显优势藻种。【结论】在具备充足的营养盐的水体中,水体层化结构与水动力特性对浮游藻类演替影响重大。三峡水库水位处于快速消落阶段时,流速成为抑制神农溪库湾藻类生长的主要因素。     

The effect of elevated temperature and reactor shutdown on the benthic marine flora of the millstone thermal quarry,Connecticut

Forty-nine species and one variety of benthic blue-green, red, brown and green algae were found over a 1.5 year period in a thermal sea water dump where temperatures average 10°C above ambient Long Island Sound waters. Of these, 58% can survive temperatures exceeding 30°C, but only six show survival after prolonged excessive temperature. At temperatures less than 27°C, the number of taxa is independent of temperature, but at greater temperatures there is a significant negative correlation of temperature to taxa count, reaching a minimum of 3 species. Rapid temperature drops cause concomitant drops in taxa counts, 14% of this variation being attributed to drastic temperature change which affects the algae.     

Towards clarifying the presence of alien algae in inland waters — can we predict places of their occurrence?

Small algae are the trophic basis in both marine and freshwater ecosystems. The identification of tiny microorganisms and place of their origin is laborious but necessary. This paper consists of a literature review of 17 species of planktonic algae, with a discussion of taxonomic problems. We also clarify whether these 17 species are non-native, invasive or cryptogenic species, with an indication whether they had been recognised as ‘alien’ in Europe. According to our observations, areas colonized by small and alien algal species, were anthropogenically altered. There were: systems with heated waters (‘heated islands’), which imitated tropical conditions; highly eutrophic to hypereutrophic water ecosystems, easily colonized by alien species, fishponds with intense fish cultivation, where alien species of fish are/had been introduced, which carried also other alien organisms; and inland water ecosystems with high salinity or high conductivity e.g. pits inundated by mine waters, imitating sea or brackish conditions acting as hubs of migration of alien species adapted to brackish or saline waters. We have prepared a map showing areas inhabited by alien species, both of documented places and hypothetical ones, where we would expect alien species to occur.     

Intra- and infra-specific morphological variation in selected coccolithophore species in the equatorial and subequatorial Pacific Ocean

The ecological preferences of morphological groups within major coccolithophore taxa were studied in surface water samples from the equatorial and subequatorial Pacific Ocean. Emiliania huxleyi was subdivided into three morphological groups: Type A, Type C, and variety corona. The most probable factors limiting the occurrence of E. huxleyi Types A and C were high temperatures and low nutrient concentrations, respectively. E. huxleyi var. corona had an affinity for oligotrophic conditions. Calcidiscus leptoporus ssp. small was adapted to fertile waters. Umbilicosphaera foliosa and Umbilicosphaera sibogae preferred mesotrophic upwelling waters and stratified marginal waters surrounding the upwelling front, respectively. Among the three Umbellosphaera tenuis morphotypes observed in this study (Types I, III, and IV), only Type I was found in very warm tropical surface. Both Types III and IV were found in subtropical waters, and Type III differed from Type IV in that its distribution was constrained to hemi-pelagic waters. Habitat segregation among the morphotypes of major taxa indicates that the observed global distributions of these major taxa are, in fact, combinations of discrete morphological groups.