产电微生物Shewanella菌厌氧呼吸代谢网络研究进展

以模式菌株Shewanella oneidensis MR-1为代表的Shewanella菌属产电微生物广泛分布于自然水体环境中。作为兼性厌氧菌,Shewanella菌除了能进行有氧呼吸外,还能利用多种电子受体进行厌氧呼吸。通过多种细胞色素所组成的复杂电子传递网络,Shewanella菌不仅能利用渗入到周质空间的可溶性电子受体进行厌氧呼吸,更为特殊的是其能够借助电子的跨膜传递实现对胞外不溶性电子受体的异化还原代谢。本文概述了近年来Shewanella菌厌氧代谢途径的研究进展,探讨电子传递网络对Shewanella菌呼吸多样性及环境适应性的影响。     

球形红细菌厌氧降解2,4-二硝基甲苯

【目的】研究不同环境条件对2,4-二硝基甲苯(2,4-DNT)生物降解的影响。【方法】采用光合细菌球形红细菌在温度为30 °C的光照培养箱中厌氧降解2,4-DNT,并用高效液相色谱仪测定其浓度。【结果】去除2,4-DNT的最佳条件是初始浓度40 mg/L、初始pH 7.0和接种量15%。另外,2,4-DNT在菌体延滞期被细胞吸收,然后在指数期作为碳源被降解。2,4-DNT的去除率在72 h达到98.8%。从液相色谱图中观察到有2种中间代谢产物,但在120 h内产物被逐渐降解。2,4-DNT的去除动力学符合一级速率模型。【结论】不同条件下2,4-DNT的去除率表明球形红细菌能有效降解2,4-DNT。     

硝酸盐还原条件下Fe0/厌氧微生物联合体系降解2,4,6-三氯酚

本文采用间歇试验,对硝酸盐还原条件下Fe0/厌氧微生物联合体系降解2,4,6-三氯酚(2,4,6-TCP)进行了研究。考察了不同硝酸盐浓度下,体系中pH、硝酸盐浓度以及硝酸盐还原活性的变化情况。结果表明:当2,4,6-TCP初始浓度为20mg/L时,硝酸盐对Fe0/厌氧微生物联合体系降解2,4,6-三氯酚具有明显的抑制作用;且随着硝酸盐浓度的升高,2,4,6-TCP的去除率降低,硝酸盐还原活性升高;体系先发生硝酸盐还原再进行2,4,6-TCP还原脱氯。     

2,4-二硝基甲苯在鲤肝匀浆S9组份作用下的生物转化

硝基芳烃化合物特别是 2 ,4-二硝基甲苯 (2 ,4-ＤＮＴ)是一种典型的环境污染物 ,美国环保局将其列为优先监测污染物。我国松花江水中和鱼体中已多次检出此类污染物。因此研究 2 ,4-ＤＮＴ在鱼体内的生物转化规律对于保护生态环境 ,维护人类健康具有实际意义。近年来通过体外实验研究硝基芳烃化合物在生物体内的代谢过程 ,以哺乳动物 (鼠 )的研究比较系统[1—3] ,在水生生物方面还未见报道。本文从酶学角度进行体外实验 ,探讨 2 ,4-ＤＮＴ在鲤肝Ｓ9组份作用下的生物转化规律 ,为研究 2 ,4-ＤＮＴ在鱼体内的代谢机制提供依据。1　材料与方法1 …     

磁铁矿对奥奈达希瓦氏菌MR-1厌氧还原甲基橙性能的影响

【目的】在微生物对染料的厌氧还原转化过程中,前人研究发现磁铁矿可以作为胞外电子传递介质提高或降低染料的微生物还原速率,这两种截然不同的作用结果背后的作用机制仍亟待阐明。【方法】利用水热法合成磁铁矿,选择甲基橙作为微生物胞外还原的典型偶氮染料,研究磁铁矿对奥奈达希瓦氏菌MR-1厌氧还原甲基橙(methyl orange, MO)的影响。【结果】研究发现磁铁矿对MO的降解表现出明显的浓度依赖性效应：同只添加细菌组相比,低浓度组(20-50 mg/L) MO的脱色效率提高了4.07%-10.64%,而高浓度组(100-200 mg/L)下降了3.92%-18.35%。进一步研究发现磁铁矿浓度变化对MO微生物还原的影响与染料在矿物表面的分配无关,主要体现在影响细胞表面形态、代谢活性和电子传递效率等方面。低浓度组ATP生成量提高了1.08%-7.65%,生成了0.033-0.051 mg/L Fe²⁺,而高浓度组ATP生成量降低了38.74%-60.14%,Fe²⁺浓度增至0.091 mg/L。此外,外源Fe²⁺的实验结果证明Fe²⁺对MO的厌氧还原同样表现出低浓度(0.01-0.02 mg/L)促进,高浓度(＞0.05 mg/L)抑制的影响趋势。【结论】低浓度磁铁矿未影响细菌细胞形态,提高了细胞代谢活性,体系中少量的溶解态Fe²⁺有利于MO微生物还原,而高浓度磁铁矿则表现出相反的影响趋势。本研究为全面理解磁铁矿对胞外电子传递的影响及其在有机污染物还原转化中的应用提供了参考。     

生物法转化甘油生产1,3-二羟基丙酮的研究进展

1,3-二羟基丙酮(DHA)是一种重要的化工医药中间体,广泛应用于化妆品、医药和食品等领域,开展提高DHA生产效能的研究对于工业生产具有指导意义。甘油生物转化生产DHA是目前主要的工业生产方法,但存在菌株转化效能有待提高、底物和产物抑制、溶氧限制等问题。本文概述了DHA的生物合成途径、菌株改良策略、生产工艺及分离提取等方面的研究进展,指出利用代谢工程技术改造菌种、优化生产工艺、简化分离提纯方法是今后的研究方向。     

4,4-二甲基-2-环戊烯-1-酮在天然萜类合成中的应用

本文综述了近30年来4,4-二甲基-2-环戊烯-1-酮在天然萜类合成中的应用。     

零价铁对2,4-二氯酚生物还原脱氯的影响研究

采用间歇试验,接种驯化两月的厌氧混合微生物,考察厌氧体系中添加零价铁（Fe^0）对2,4-二氯酚（2,4-DCP）生物还原脱氯效果的影响,并对影响“Fe^O＋微生物”体系的一些因素进行了探索。结果显示：与零价铁或微生物的单独作用相比,“Fe^O＋微生物”体系能够有效促进2,4-DCP的脱氯反应,最佳Fe^O投加量和微生物接种量分别为0.5g／L和376.2mgVSS／L;初始pH=8.0对2,4-DCP的转化效果最好,偏酸性环境不利于污染物转化;微生物接种量与铁用量之间有一适宜比例,一定范围内增加微生物接种量可催生出更多可降解污染物的酶或酶系,提高2,4-DCP的降解效果。     

零价铁对2,4-二氯酚生物还原脱氯的影响研究

采用间歇试验, 接种驯化两月的厌氧混合微生物, 考察厌氧体系中添加零价铁(Fe0)对2,4-二氯酚(2,4-DCP)生物还原脱氯效果的影响, 并对影响“Fe0+微生物”体系的一些因素进行了探索。结果显示：与零价铁或微生物的单独作用相比, “Fe0+微生物”体系能够有效促进2,4-DCP的脱氯反应, 最佳Fe0投加量和微生物接种量分别为0.5 g/L和376.2 mgVSS/L; 初始pH = 8.0对2,4-DCP的转化效果最好, 偏酸性环境不利于污染物转化; 微生物接种量与铁用量之间有一适宜比例, 一定范围内增加微生物接种量可催生出更多可降解污染物的酶或酶系, 提高2,4-DCP的降解效果。     

一株奥奈达希瓦氏菌烈性噬菌体的分离、纯化及鉴定

【目的】从环境中分离获得希瓦氏菌烈性噬菌体,并对其性质进行研究。【方法】以4株希瓦氏菌为宿主菌,采用双层平板法从污水样品中分离得到奥奈达希瓦氏菌MR-1烈性噬菌体M1;观察噬菌斑特征;利用超速离心法浓缩M1颗粒,进一步用氯化铯密度梯度离心纯化;采用透射电子显微镜观察纯化的M1颗粒;提取M1核酸,通过核酸酶处理分析其核酸类型及结构;绘制一步生长曲线。【结果】噬菌体M1在双层平板上形成圆形的噬菌斑,清晰透明,边缘光滑,直径为2.3 mm-2.5 mm;经电镜观察,噬菌体M1头部呈二十面体,直径约为55 nm,尾长约为170 nm,尾部可收缩,属于肌尾噬菌体科(Myoviridae);通过酶切分析表明噬菌体M1核酸为线形双链DNA;一步生长曲线显示该噬菌体感染后完成一个复制循环所需要的时间约为15-20 min。【结论】噬菌体M1属肌尾噬菌体科,研究结果为后续研究病毒在地球微生物成岩过程中所起的作用提供了实验材料。     

Microbial Reduction of Cr (VI)-loaded Schwertmannite by Shewanella oneidensis MR-1

Microbial transformation of sulfate minerals plays an important role in controlling the behavior of heavy metals in mining areas. Here, the anaerobic reduction of Cr (VI)-loaded schwertmannite by Shewanella oneidensis MR-1 (S. oneidensis MR-1) was investigated. The release of ferrous iron (Fe(II)) to the solution demonstrated the microbial reduction of structural Fe(III) from the schwertmannite to Fe(II). The concentration of Cr in solution decreased in all treatments, indicating that no Cr was released to the solution during this bio-reduction process of schwertmannite. The incorporation of chromate into the mineral structure of schwertmannite increased the microbial stability of the mineral, retarding the formation of secondary phases during bio-reduction process. Analysis of the XRD, SEM and fourier transform infrared spectroscopy (FT-IR) results further showed that goethite formed after 3 or 7 days with a lower content (0.22% or 0.37%) of Cr in schwertmannite, while no secondary mineral was observed with a higher concentration of Cr (0.6 wt%) incorporated in schwertmannite until 22 days. These results imply that microbial reduction of Cr(VI)-loaded schwertmannite does not lead to the release of Cr to the solution, and the microbial stability of schwertmannite will be increased by the incorporation of chromate.     

Cometabolism of Cr(VI) by Shewanella oneidensis MR-1 produces cell-associated reduced chromium and inhibits growth

Microbial reduction is a promising strategy for chromium remediation, but the effects of competing electron acceptors are still poorly understood. We investigated chromate (Cr(VI)) reduction in batch cultures of Shewanella oneidensis MR-1 under aerobic and denitrifying conditions and in the absence of an additional electron acceptor. Growth and Cr(VI) removal patterns suggested a cometabolic reduction; in the absence of nitrate or oxygen, MR-1 reduced Cr(VI), but without any increase in viable cell counts and rates gradually decreased when cells were respiked. Only a small fraction (1.6%) of the electrons from lactate were transferred to Cr(VI). The 48-h transformation capacity (Tc) was 0.78 mg (15 micromoles) Cr(VI) reduced. [mg protein](-1) for high levels of Cr(VI) added as a single spike. For low levels of Cr(VI) added sequentially, Tc increased to 3.33 mg (64 micromoles) Cr(VI) reduced. [mg protein](-1), indicating that it is limited by toxicity at higher concentrations. During denitrification and aerobic growth, MR-1 reduced Cr(VI), with much faster rates under denitrifying conditions. Cr(VI) had no effect on nitrate reduction at 6 microM, was strongly inhibitory at 45 microM, and stopped nitrate reduction above 200 microM. Cr(VI) had no effect on aerobic growth at 60 microM, but severely inhibited growth above 150 microM. A factor that likely plays a role in Cr(VI) toxicity is intracellular reduced chromium. Transmission electron microscopy (TEM) and electron energy loss spectroscopy (EELS) of denitrifying cells exposed to Cr(VI) showed reduced chromium precipitates both extracellularly on the cell surface and, for the first time, as electron-dense round globules inside cells.     

The outer membrane cytochromes of Shewanella oneidensis MR-1 are lipoproteins

AIM: To determine if the outer membrane (OM) cytochromes OmcA and OmcB of the metal-reducing bacterium Shewanella oneidensis MR-1 are lipoproteins, and to assess cell surface exposure of the cytochromes by radioiodination. METHODS AND RESULTS: In anaerobic MR-1 cells grown with (3)H-palmitoleic acid, both OmcA and OmcB were radiolabelled. The identities of these bands were confirmed by the absence of each radiolabelled band in the respective mutants lacking individual OM cytochromes. Radioiodination of cell surface proteins in anaerobic cells resulted in (125)I-labelled OmcA. The identity of this band was confirmed by its absence in an OmcA-minus mutant. A ubiquitous radioiodinated band that migrates similarly to OmcB precluded the ability to determine the potential cell surface exposure of OmcB by this method. CONCLUSIONS: Both OmcA and OmcB are lipoproteins, and OmcA is cell surface exposed. SIGNIFICANCE: The lipoprotein modification of these OM cytochromes could be important for their localization or incorporation into the OM. The cell surface exposure of OmcA could allow it to directly transfer electrons to extracellular electron acceptors (e.g. manganese oxides) and is consistent with its in vivo role.     

Cell surface exposure of the outer membrane cytochromes of Shewanella oneidensis MR-1

AIM: To determine if the outer membrane (OM) cytochromes of the metal-reducing bacterium Shewanella oneidensis MR-1 are exposed on the cell surface. METHODS AND RESULTS: MR-1 cells were incubated with proteinase K or buffer and the resulting degradation of the OM cytochromes was examined by Western blotting. The periplasmic fumarate reductase (control) was not degraded. The OM cytochromes OmcA and OmcB were significantly degraded by proteinase K (71 and 31%, respectively). Immunofluorescence confirmed a prominent cell surface exposure of OmcA and a partial exposure of OmcB and the noncytochrome OM protein MtrB. CONCLUSIONS: The cytochromes OmcA and OmcB are exposed on the outer face of the OM. SIGNIFICANCE AND IMPACT OF THE STUDY: The cell surface exposure of these cytochromes could allow them to directly contact extracellular insoluble electron acceptors (e.g. manganese oxides) and is consistent with their in vivo role.     

Analysis of the Shewanella oneidensis proteome by two-dimensional gel electrophoresis under nondenaturing conditions

Proteomes are dynamic, i.e., the protein components of living cells change in response to various stimuli. Protein changes can involve shifts in the abundance of protein components, in the interactions of protein components, and in the activity of protein components. Two-dimensional gel electrophoresis (2-DE) coupled with peptide mass spectrometry is useful for the analysis of relative protein abundance, but the denaturing conditions of classical 2-DE do not allow analysis of protein interactions or protein function. We have developed a nondenaturing 2-DE method that allows analysis of protein interactions and protein functions, as demonstrated in our analysis of the cytosol and crude membrane fractions of the facultative anaerobe Shewanella oneidensis MR-1. Our experiments demonstrate that enzymatic activity is retained under the sample and protein separation methods described, as shown by positive malate dehydrogenase activity results. We have also found protein interactions within both the soluble and membrane fractions. The method described will be useful for the characterization of the functional proteomes of microbial systems.     

CpdA is involved in amino acid metabolism in Shewanella oneidensis MR-1

Cyclic 3′,5′-adenosine monophosphate (cAMP) phosphodiesterase (CPD) is an enzyme that catalyzes the hydrolysis of cAMP, a signaling molecule affecting diverse cellular and metabolic processes in bacteria. Some CPDs are also known to function in cAMP-independent manners, while their physiological roles remain largely unknown. Here, we investigated physiological roles of CPD in Shewanella oneidensis MR-1, a model environmental bacterium, and report that CPD is involved in amino-acid metabolism. We found that a CPD-deficient mutant of MR-1 (ΔcpdA) showed decreased expression of genes for the synthesis of methionine, S-adenosylmethionine, and histidine and required these three compounds to grow in minimal media. Interestingly, deletion of adenylate cyclases in ΔcpdA did not restore the ability to grow in minimal media, indicating that the amino acid requirements were not due to the accumulation of cAMP. These results suggest that CPD is involved in the regulation of amino acid metabolism in MR-1 in a cAMP-independent manner.     

Optimal method for efficiently removing extracellular nanofilaments from Shewanella oneidensis MR-1

The identification, production, and potential electron conductivity of bacterial extracellular nanofilaments is an area of great study, specifically in Shewanella oneidensis MR-1. While some studies focus on nanofilaments attached to the cellular body, many studies require the removal of these nanofilaments for downstream applications. The removal of nanofilaments from S. oneidensis MR-1 for further study requires not only that the nanofilaments be detached, but also for the cell bodies to remain intact. This is a study to both qualitatively (AFM) and quantitatively (LC/MS-MS) assess several nanofilament shearing methods and determine the optimal procedure. The best method for nanofilament removal, as judged by maximizing extracellular filamentous proteins and minimizing membrane and intracellular proteins, is vortexing a washed cell culture for 10 min.