Mesophotic reef fish assemblages of the remote St. Peter and St. Paul’s Archipelago,Mid-Atlantic Ridge,Brazil

Mesophotic reef fish assemblages (30–90 m depth) of the small and remote St. Peter and St. Paul’s Archipelago (SPSPA), Mid-Atlantic Ridge, Brazil, were characterized using remotely operated vehicles. Ordination analyses identified distinct fish assemblages in the upper (30–50 m) and lower (50–90 m) mesophotic zones, the former characterized by high abundances of species that are also abundant at euphotic reefs (Caranx lugubris, Melichthys niger, Stegastes sanctipauli and Chromis multilineata) and the latter dominated by two mesophotic specialists (Prognathodes obliquus and Chromis enchrysura). Planktivores dominated fish assemblages, particularly in the upper mesophotic zone, possibly due to a greater availability of zooplankton coming from the colder Equatorial Undercurrent in mesophotic depths of the SPSPA. Turf algae, fleshy macroalgae and scleractinian corals dominated benthic assemblages between 30 and 40 m depth, while bryozoans, black corals and sponges dominated between 40 and 90 m depth. Canonical correspondence analysis explained 74 % of the relationship between environmental characteristics (depth, benthic cover and complexity) and structure of fish assemblages, with depth as the most important independent variable. Juveniles of Bodianus insularis and adults of P. obliquus and C. enchrysura were clearly associated with branching black corals (Tanacetipathes spp.), suggesting that black corals play key ecological roles in lower mesophotic reefs of the SPSPA. Results from this study add to the global database about mesophotic reef ecosystems (MREs) and provide a baseline for future evaluations of possible anthropogenic and natural disturbances on MREs of the SPSPA.     

Exploratory multiscale analysis of the fish assemblages and habitats of the lower St. Lawrence River,Québec,Canada

This work presents a multiscale analysis of the fish diversity of the lower St. Lawrence River which flows from the Laurentian Great Lakes of North America. A database of about 14,000 fish sampling stations from the lower St. Lawrence is linked to five different habitat maps of the study area: hydrographical units, water masses, depth, sediment type and wetland type. We hypothesize that species turnover (beta diversity) will be significant among these habitat maps. For each map, we calculate a UPGMA dendrogram based on the Jaccard coefficient of similarity in species occurrences as a first assemblage–habitat model. A randomization test is then used to identify the significant dendrograms from which we infer fish assemblages. We then show that many species are actually selecting or avoiding habitats. Finally, species selecting particular habitats are described by some selected ecological traits that are expected to occur frequently in those habitats. We found assemblages for the hydrographical units but not for the water masses. The fluvial section is selected by many stenohaline and some euryhaline species, while the freshwater estuary and the brackish estuary are only selected by euryhaline species. In the fluvial section at the hydrographical unit scale, many species associated with lentic habitats are limnophilic and more vegetation-dependent while many species selecting lotic habitats are rheophilic insectivorous species. Significant assemblages are defined for depth, sediment type and wetland type. Taken together, we found strong empirical evidence of a diverse actively selecting littoral assemblage of small, low mobility fishes opposing a channel assemblage of larger, more mobile fishes.     

Biotechnology education and the training of engineer-technologists in the St. Petersburg State Chemical–Pharmaceutical Academy and the State University of Technology and Design

Some facts about biotechnological education in St. Petersburg (Russia) are presented by authors at two different higher schools: the State Chemical–Pharmaceutical Academy and the State University of Technology and Design.     

Migration as the main factor of the Russia’s urban population dynamics

This review summarizes the results of the long-term studies performed at the Institute of General Genetics, Russian Academy of Sciences, in the field of genetic demography of migration processes in Russia and its capital. The main population-genetic parameters of migration and their dynamics in Moscow over a hundred years are given. Sociodemographic and population-genetic implications of migration processes are considered. A model predicting the population gene pool dynamics under migration pressure for genes of different localization (autosomal, sex-linked, and mitochondrial), exemplified by predicting the allele frequency dynamics in the Moscow population of some gene markers, including genes accounting for monogenic pathology and genes associated with resistance to socially significant diseases, are presented. The paper discusses the selective character of migration processes, in particular, processes of emigration, with respect to some genetically significant ethnodemographic traits; the problem of adaptation of migrants; and adaptive strategies of consolidation of ethnoconfessional groups in the megalopolis (compact settlement over the urban territory and positive assortative mating with respect to demographic traits). It was shown that, owing to the intense influx of migrants and gene flows between ethnic groups, the population of the megalopolis is of mixed origin in terms of ethnic, anthropologic, and genetic aspects. The results of the study suggest the necessity to develop a specific strategy of genetic database formation for the population of megalopolises for the purposes of medical genetics and forensic medicine.     

Development of children adopted to the United States following a social–emotional intervention in St. Petersburg (Russian Federation) institutions

This study is a post-adoption follow-up of social–emotional interventions in St. Petersburg, Russian Federation Baby Homes (BHs). Children previously resided in BHs and received Care as Usual (CAU, N?=?220), Training Only (TO, N?=?94), or Training plus Structural Changes (T?+?SC, N?=?45). This study examined intervention effects 0–6.5 years post-adoption to the United States, at age 9 months to 7 years old. Adoptive parents completed questionnaires on their child’s social and behavioral development. Intervention graduates had better attachment security, less indiscriminate friendliness, and fewer behavior problems than CAU graduates. Children who had longer exposure to intervention conditions had better attachment security, but poorer executive function, externalizing and internalizing problems, and competence. Thus, although postinstitutionalized children were generally functioning in the normal range in early childhood and effect sizes were small, a social–emotional intervention in institutions is associated with modest benefits to attachment and behavior problems and apparent decrements to executive function.     

Analysis of the Putative Remains of a European Patron Saint–St. Birgitta

Saint Birgitta (Saint Bridget of Sweden) lived between 1303 and 1373 and was designated one of Europe''s six patron saints by the Pope in 1999. According to legend, the skulls of St. Birgitta and her daughter Katarina are maintained in a relic shrine in Vadstena abbey, mid Sweden. The origin of the two skulls was assessed first by analysis of mitochondrial DNA (mtDNA) to confirm a maternal relationship. The results of this analysis displayed several differences between the two individuals, thus supporting an interpretation of the two skulls not being individuals that are maternally related. Because the efficiency of PCR amplification and quantity of DNA suggested a different amount of degradation and possibly a very different age for each of the skulls, an orthogonal procedure, radiocarbon dating, was performed. The radiocarbon dating results suggest an age difference of at least 200 years and neither of the dating results coincides with the period St. Birgitta or her daughter Katarina lived. The relic, thought to originate from St. Birgitta, has an age corresponding to the 13^th century (1215–1270 cal AD, 2σ confidence), which is older than expected. Thus, the two different analyses are consistent in questioning the authenticity of either of the human skulls maintained in the Vadstena relic shrine being that of St. Birgitta. Of course there are limitations when interpreting the data of any ancient biological materials and these must be considered for a final decision on the authenticity of the remains.     

Unraveling the effects of water–sediment conditions and spatial patterns on Unionida assemblages in seasonally connected floodplain lakes

Floodplain lakes are good metacommunity systems to study the environmental and spatial processes structuring local assemblages. They are more connected during high-water periods and are more isolated during low-water periods. We evaluated the effects of lake spatial patterning and water and sediment conditions on Unionida species assemblages. Moran Eigenvector Maps were used to generate spatial variables representing spatial patterns at different scales. We sampled 35 lakes from the Pantanal floodplain, Brazil. To understand the effects of environmental and spatial variables, we performed Redundancy Analyses and variation partitioning to separate environmental and spatial pattern effects. Environmental variables explained almost twice the variation in the Pantanal mussel assemblages than did spatial variables. Unionida species presence was driven mainly by variations in sediment coarse sand and silt contents. The weak spatial patterns observed may be related to increased connectivity between lakes during floods, which facilitates mussel host fish dispersal. Mussel abundances were driven mainly by organic matter availability, but varied between species. Changes in lake connectivity can affect the regional sediment dynamics and affect mussel assemblages.

     

Structurally flexible macro-organization of the pigment–protein complexes of the diatom Phaeodactylum tricornutum

By means of circular dichroism (CD) spectroscopy, we have characterized the organization of the photosynthetic complexes of the diatom Phaeodactylum tricornutum at different levels of structural complexity: in intact cells, isolated thylakoid membranes and purified fucoxanthin chlorophyll protein (FCP) complexes. We found that the CD spectrum of whole cells was dominated by a large band at (+)698 nm, accompanied by a long tail from differential scattering, features typical for psi-type (polymerization or salt-induced) CD. The CD spectrum additionally contained intense (−)679 nm, (+)445 nm and (−)470 nm bands, which were also present in isolated thylakoid membranes and FCPs. While the latter two bands were evidently produced by excitonic interactions, the nature of the (−)679 nm band remained unclear. Electrochromic absorbance changes also revealed the existence of a CD-silent long-wavelength (∼545 nm) absorbing fucoxanthin molecule with very high sensitivity to the transmembrane electrical field. In intact cells the main CD band at (+)698 nm appeared to be associated with the multilamellar organization of the thylakoid membranes. It was sensitive to the osmotic pressure and was selectively diminished at elevated temperatures and was capable of undergoing light-induced reversible changes. In isolated thylakoid membranes, the psi-type CD band, which was lost during the isolation procedure, could be partially restored by addition of Mg-ions, along with the maximum quantum yield and the non-photochemical quenching of singlet excited chlorophyll a, measured by fluorescence transients.     

Records of the Siberian–Beringian Genus Nordodiaptomus (Copepoda,Calanoida) from the European Part of Russia

Biology Bulletin - The morphological characters and biology of the copepod genus Nordodiaptomus Wilson from temporary waterbodies lying in the northern part of the middle taiga belt of the Komi...     

Lack of pattern among phytoplankton assemblages. Or,what does the exception to the rule mean?

In Science we cannot say that `the exception proves the rule'. We have been looking to define patterns in phytoplankton occurrence across trophic spectra where conspicuous covariations between algae and trophic states have been reported. We consider quite different phytoplankton communities observed under similar trophic conditions: we illustrate this point by considering five different phytoplankton communities living in five water bodies in the same wetland, along a TP gradient and over a period of 2 years. This system showed a remarkable dissimilarity of species representation, implying communities of uncorrelated species vary considerably over time. Despite the presence of some characteristic species, communities were not related to a given trophic state. However, coarser community attributes, such as clusters of taxonomic classes, appeared to be more useful in identifying patterns and assembly rules related to trophic spectra. Some ecological concepts can be related to this lack of pattern, e.g., nonconvergence, trajectories far from equilibrium and assembly rules of communities.     

The palynological assemblages from the J–K boundary beds of the Bureya Basin,Russian Far East

Palynological assemblages were studied from the coal-bearing Upper Jurassic (Talanja Formation) to the Lower Cretaceous (Dublikan Formation) deposits of the Bureya Basin, Russia. The palynological assemblages from the upper part of the Talanja Formation are dominated by gymnosperms, mainly Ginkgocycadophytus (up to 40%) and conifers related to Pinaceae (up to 70%). The contribution of non-seed plants is not great, but their diversity is considerable. The miospore assemblages of the Talanja sequence are characterized by the last appearance of the spore taxa Staplinisporites pocockii, Camptotriletes cerebriformis, Camptotriletes nitida, and Cingulatisporites sanguinolentus. The palynological assemblage from the Dublikan Formation is dominated by ferns (up to 84%), represented mainly by Cyathidites and Duplexisporites. Among gymnosperms the role of Classopollis increases (making up about 20%). Another feature is the first appearance of the spore taxa Stereisporites bujargiensis, Neoraistrickia rotundiformis, Contignisporites dorsostriatus, Appendicisporites tricostatus, and Concavissimisporites asper.     

A new species of Phoenicopsis (Leptostrobales) from the Maastrichtian–Danian of Chukotka,Russia

A new species, Phoenicopsis anadyrensis Nosova, is described based on the leaf morphology and cuticle features from the Maastrichtian–Danian Rarytkin Formation, Chukotka, North-East of Russia. It is characterized by hypostomatic leaves with stomatal bands on the abaxial side, undulate anticlinal epidermal cell walls and papillae on the epidermal cells and on the subsidiary cells of the stomata. The new species is the youngest reliable representative of the genus Phoenicopsis. This record extends the stratigraphic range of Phoenicopsis from its previously known latest records in the early Campanian up to Maastrichtian–Danian. The persistence of the genus Phoenicopsis up to the Cretaceous–Paleogene boundary is most likely related with vicinity to mountain floras associated with Late Cretaceous and Paleogene volcanic uplands.     

Ant assemblages on littered food waste and food removal rates in urban–suburban parks of Tokyo

Ants are one of the major animals utilizing waste in urban areas, and presumably have an important role in nutrient redistribution and cycling. However, information on ant assemblages on artificial food and their food removal rates in different habitat types is lacking, and the relationship between ant assemblage and removal rate is poorly understood. We assessed assemblages of ants on experimentally placed foods (potato chips, cookies and ham) and their food removal rates on three land cover types (woodlands, lawns and pavements) at 90 sites in 10 urban and suburban parks of Tokyo. Then, we examined the relationship between ant assemblage and food removal rate. In total, 11 trophic generalist ants were associated with food removal. Species composition differed significantly between land cover types, and the mean number of species was higher in woodlands than on lawns and pavements, while not significantly different between urban and suburban parks. The ants removed, on average, 6.3 g of 18-g food in fresh weight (or 5.3 g of 13.9-g food in dry weight) per site in 24 h. There were both negative and positive associations between ant species presence and food removal rate, but no significant associations between species number and food removal rate. Food removal rate was highest on lawns, and that in woodlands was not significantly different from that on lawns and pavements. Therefore, our study suggests that ants on lawns and pavements, despite lower number of species and altered species composition, have a comparable or higher ability to redistribute nutrients from artificial foods as compared with woodland ants. This indicates that such highly artificial land cover types should also be included in studies on urban ecosystem services.     

Parasitoid-mediated effects: apparent competition and the persistence of host–parasitoid assemblages

Indirect effects such as apparent competition (in which two hosts that do not compete for resources interact via a shared natural enemy) are increasingly being shown to be prevalent in the structure and function of ecological assemblages. Here, we review the empirical and theoretical evidence for these enemy-mediated effects in host–parasitoid assemblages. We first address questions about the design of experiments to test for apparent competition. Second, we consider factors likely to affect the coexistence of host species that share a parasitoid and are involved in apparent competition. We show that parasitoid aggregation, and the switching effect that this can generate when hosts occur in separate patches, not only promotes persistence but is also strongly stabilizing. The broader consequences of these effects are discussed. Received: November 6, 1998 / Accepted: January 13, 1999     

Location-Dependent Local Field Enhancement Along the Surface of the Metal–Dielectric Core–Shell Nanostructure

A theoretical study based on quasi-static approximation is performed to investigate the location-dependent local field enhancement around the dielectric shell-coated gold nanosphere. Our calculation results show that the local field distribution near a gold nanoparticle can be altered greatly by coating with a dielectric shell. Because of the polarizability of the dielectric shell, increasing azimuth angle along the inner surface leads to the increase of the local field, which is opposite to that of the outer surface. Furthermore, the location-dependent local field enhancement and resonance frequency at both the inner and outer surfaces can also be modulated by varying the shell thickness and shell dielectric constant. These calculation results about the location-dependent local field enhancement show the potential of dielectric-coated metallic nanostructure for single-molecule detection based on surface-enhanced Raman scattering and surface enhanced fluorescence.