Plant Growth Promoting Characterization of Indigenous Azotobacteria Isolated from Soils in Iran

It has been well known that the bacteria of the genus Azotobacter, in addition to the beneficial N₂-fixing activity, are able to improve plant growth by a number of direct and indirect mechanisms. To identify this potential in indigenous azotobacteria, the efficiency of 17 isolates of Azotobacter from the rhizosphere of wheat and barley plants cultivated in salt- and/or drought-affected soils in Iran were evaluated for their ability to dissolve inorganic and organic phosphates, siderophore secretion, indole acetic acid (IAA) production; and protease, chitinase, and ACC deaminase (ACCD) activities. First, they were biochemically characterized and one isolate (strain) was identified by 16S rDNA sequencing. Eight isolates were designated as Azotobacter vinelandii and the remaining isolates were identified as A. chroococcum. All isolates hydrolyzed the organic and inorganic phosphate compounds and effectively produced IAA. Fifteen isolates produced siderophore, but only one isolate showed protease activity which is being reported for the first time in relation to Azotobacter. None of the 17 isolates was capable of producing ACCD or chitinase. However, polymerase chain reaction amplification of the ACCD coding genes, by the use of the gene-specific primers, indicated that not all contain the ACCD gene. The standard screening methods with slight modifications, especially in the case of ACCD assay, were applied. The results showed that the use of specific screening methods, modified according to bacterial nutritional requirements, are the efficient methods for precise evaluation of the plant growth promoting rhizobacteria activity.     

Conservation, Small Mammals, and the Future of Sacred Groves in West Africa

This article considers the conservation of relict natural habitat in West Africa, especially habitat preserved in traditional sacred groves. Government-sanctioned conservation is contrasted with local grassroots efforts of conservation. Evidence for the ecological value of sacred groves is based on results of a field study of small mammal communities conducted on the Accra Plains of Ghana and on published sources on the conservation and use of sacred groves from various countries. The study employed standard mark-and-recapture techniques for the sampling for terrestrial small mammals, and mist netting for the sampling of bat communities. Pragmatic approaches combining conservation and sustainable use are considered, as are traditional values that have preserved the sacred groves in the past for up to several hundred years in some cases. In part because these groves shelter unique small mammal and plant communities, traditional values and protection mechanisms should be integrated into the newly emerging cultural and religious contexts. The issues encountered during this study reveal that effective conservation involving local peoples requires a concerted interdisciplinary effort. This revised version was published online in November 2006 with corrections to the Cover Date.     

Biochemical and Molecular Characterization of Potential Phosphate-Solubilizing Bacteria in Acid Sulfate Soils and Their Beneficial Effects on Rice Growth

A study was conducted to determine the total microbial population, the occurrence of growth promoting bacteria and their beneficial traits in acid sulfate soils. The mechanisms by which the bacteria enhance rice seedlings grown under high Al and low pH stress were investigated. Soils and rice root samples were randomly collected from four sites in the study area (Kelantan, Malaysia). The topsoil pH and exchangeable Al ranged from 3.3 to 4.7 and 1.24 to 4.25 cmol_c kg⁻¹, respectively, which are considered unsuitable for rice production. Total bacterial and actinomycetes population in the acidic soils were found to be higher than fungal populations. A total of 21 phosphate-solubilizing bacteria (PSB) including 19 N₂-fixing strains were isolated from the acid sulfate soil. Using 16S rRNA gene sequence analysis, three potential PSB strains based on their beneficial characteristics were identified (Burkholderia thailandensis, Sphingomonas pituitosa and Burkholderia seminalis). The isolated strains were capable of producing indoleacetic acid (IAA) and organic acids that were able to reduce Al availability via a chelation process. These PSB isolates solubilized P (43.65%) existing in the growth media within 72 hours of incubation. Seedling of rice variety, MR 219, grown at pH 4, and with different concentrations of Al (0, 50 and 100 µM) was inoculated with these PSB strains. Results showed that the bacteria increased the pH with a concomitant reduction in Al concentration, which translated into better rice growth. The improved root volume and seedling dry weight of the inoculated plants indicated the potential of these isolates to be used in a bio-fertilizer formulation for rice cultivation on acid sulfate soils.     

不同分子量壳聚糖对一些与植物防御反应相关生理生化指标的影响

经不同分子量壳聚糖处理的小麦幼苗中H2O2含量、过氧化物酶和苯丙氨酸解氨酶活性以及总酚含量均呈上升的趋势。低分子量壳聚糖处理的效应高于高分子量壳聚糖的。     

Characterization of Hydrocarbon-Degrading Microbial Populations in Contaminated and Pristine Alpine Soils

Biodegradation of petroleum hydrocarbons in cold environments, including Alpine soils, is a result of indigenous cold-adapted microorganisms able to degrade these contaminants. In the present study, the prevalence of seven genotypes involved in the degradation of n-alkanes (Pseudomonas putida GPo1 alkB; Acinetobacter spp. alkM; Rhodococcus spp. alkB1, and Rhodococcus spp. alkB2), aromatic hydrocarbons (P. putida xylE), and polycyclic aromatic hydrocarbons (P. putida ndoB and Mycobacterium sp. strain PYR-1 nidA) was determined in 12 oil-contaminated (428 to 30,644 mg of total petroleum hydrocarbons [TPH]/kg of soil) and 8 pristine Alpine soils from Tyrol (Austria) by PCR hybridization analyses of total soil community DNA, using oligonucleotide primers and DNA probes specific for each genotype. The soils investigated were also analyzed for various physical, chemical, and microbiological parameters, and statistical correlations between all parameters were determined. Genotypes containing genes from gram-negative bacteria (P. putida alkB, xylE, and ndoB and Acinetobacter alkM) were detected to a significantly higher percentage in the contaminated (50 to 75%) than in the pristine (0 to 12.5%) soils, indicating that these organisms had been enriched in soils following contamination. There was a highly significant positive correlation (P < 0.001) between the level of contamination and the number of genotypes containing genes from P. putida and Acinetobacter sp. but no significant correlation between the TPH content and the number of genotypes containing genes from gram-positive bacteria (Rhodococcus alkB1 and alkB2 and Mycobacterium nidA). These genotypes were detected at a high frequency in both contaminated (41.7 to 75%) and pristine (37.5 to 50%) soils, indicating that they are already present in substantial numbers before a contamination event. No correlation was found between the prevalence of hydrocarbon-degradative genotypes and biological activities (respiration, fluorescein diacetate hydrolysis, lipase activity) or numbers of culturable hydrocarbon-degrading soil microorganisms; there also was no correlation between the numbers of hydrocarbon degraders and the contamination level. The measured biological activities showed significant positive correlation with each other, with the organic matter content, and partially with the TPH content and a significant negative correlation with the soil dry-mass content (P < 0.05 to 0.001).     

Biodiversity Conservation in Sacred Groves of Manipur, Northeast India: Population Structure and Regeneration Status of Woody Species

Sacred groves are forest patches conserved by the local people intertwined with their socio-cultural and religious practice. These groves harbour rich biodiversity and play a significant role in the conservation of biodiversity. Population structure and regeneration status of woody species were studied during 2001–2002 in the four sacred groves of Manipur, a state in north east India. A total of 96 woody species was recorded from the four groves, the highest being Konthoujam Lairembi sacred grove (55 species) and lowest in Heingang Marjing sacred grove having 42 species. The density–diameter distribution of woody species in the four groves showed highest stand density and species richness in the lowest girth class (30–60 cm) and decreased in the succeeding girth classes. Overall population structure of the groves based on the number of tree seedlings, saplings and adults, displayed a greater proportion of seedlings followed by saplings and adults while for the selected tree species it varied seasonally and recruitment of species increased during rainy season attaining peak during June. Regeneration status of the four sacred groves based on strength of different age groups in their population showed good regeneration. High occurrence of ‘additional species’ to the groves may be due to the invasion through dispersal from other areas. Possibly, the prevailing favourable microenvironmental conditions contributed to their establishment and growth in the groves. Absence of seedlings and saplings of some of the species in the groves may be due to their poor seed germination and establishment of seedlings in the forest.     

Detection and Characterization of ACC Deaminase in Plant Growth Promoting Rhizobacteria

The enzyme 1-aminocyclopropane-1-carboxylate deaminase converts ACC, the precursor of the plant hormone ethylene to α-ketobutyrate and ammonium. The enzyme has been identified in few soil bacteria, and is proposed to play a key role in plant growth promotion. In this study, the isolates of plant growth promoting rhizobacteria were screened for ACC deaminase activity based on their ability to grow on ACC as a sole nitrogen source. The selected isolates showed the presence of other plant growth promoting characteristics such as IAA production, phosphate solubilization and siderophore production. The role of ACC deaminase in lowering ethylene production under cadmium stress condition was also studied by measuring in vitro ethylene evolution by wheat seedlings treated with ACC deaminase positive isolates. Nucleic acid hybridization confirmed the presence of ACC deaminase gene (acdS) in the bacterial isolates.     

Growth Enhancement of Chickpea in Saline Soils Using Plant Growth-Promoting Rhizobacteria

Bacterial isolates with the ability to tolerate salinity and plant growth-promoting features were isolated from the saline areas of Gujarat, India, that is, Bhavnagar and Khambat. A total of 176 strains of rhizobacteria were isolated out of which 62 bacterial strains were able to tolerate 1 M NaCl. These were then further studied for their potential plant growth-promoting rhizobacteria characteristics like phosphate solubilization, siderophore production, and IAA production. Twenty-eight isolates of the 62 strains showed good tricalcium phosphate solubilization in solid medium in the range of 9–22 mm and 15 isolates showed good phosphate solubilization in liquid medium in the range of 9–45 μg/ml. Siderophore production was checked in all 15 isolates, and 13 were screened out that produced the hydroxamate type of siderophore in the range of 11–50 mM. Among the 13 isolates, 10 were able to produce indole acetic acid in the range of 10–26 μg/ml after 72 h of incubation. Pot trials were carried out on chickpea under 300 mM NaCl stress using the best five isolates. Plants inoculated with MSC1 or MSC4 isolates showed an increase in the parameters that evaluate plant growth when compared to uninoculated controls. Strains MSC1 and MSC4 were identified as Pseudomonas putida and Pseudomonas pseudoalcaligens, respectively, according to sequence analysis of the 16S rRNA gene.     

Erratum to: Pesticide-Degrading and Phosphate-Solubilizing Bacilli Isolated from Agricultural Soil of Punjab (India) Enhance Plant Growth

Microbiology - An Erratum to this paper has been published: https://doi.org/10.1134/S0026261722300130     

Prevalent Mutations of Human Prion Protein: A Molecular Modeling and Molecular Dynamics Study

Abstract

Point mutations in the human prion protein gene, leading to amino acid substitutions in the human prion protein contribute to conversion of PrP^C to PrP^Sc and amyloid formation, resulting in prion diseases such as familial Creutzfeldt-Jakob disease (CJD), Gerstmann-Straussler-Scheinker disease (GSS), and fatal familial insomnia. We have investigated impressions of prevalent mutations including Q217R, D202N, F198S, on the human prion protein and compared the mutant models with wild types. Structural analyses of models were performed with molecular modeling and molecular dynamics simulation methods. According to our results, frequently occurred mutations are observed in conserved and fully conserved sequences of human prion protein and the most fluctuation values occur in the Helix 1 around residues 144–152 and C-terminal end of the Helix 2. Our analysis of results obtained from MD simulation clearly shows that this long-range effect plays an important role in the conformational fluctuations in mutant structures of human prion protein. Results obtained from molecular modeling such as creation or elimination of some hydrogen bonds, increase or decrease of the accessible surface area and molecular surface, loss or accumulation of negative or positive charges on specific positions, and altering the polarity and pKa values, show that amino acid point mutations, though not urgently change the stability of PrP, might have some local impacts on the protein interactions which are required for oligomerization into fibrillar species.     

植物遗传多样性保护及其分子生物学研究方法

植物遗传多样性保护及其分子生物学研究方法李俊清（北京林业大学森林资源与环境学院,１０００８３）ＣｏｎｓｅｒｖａｔｉｏｎｏｆＰｌａｎｔＧｅｎｅｔｉｃＤｉｖｅｒｓｉｔｙａｎｄＲｅｌａｔｅｄＭｏｌｅｃｕｌａｒＢｉｏｌｏｇｉｃａｌＴｅｃｈｎｉｑｕｅｓ．￥Ｌｉ...     

Wound-induced Accumulation of Trypsin Inhibitor Activities in Plant Leaves: Survey of Several Plant Genera

Asexual embryogenesis in Daucus carota L. `Queen Anne's Lace' callus was suppressed by Ethephon, ethylene, and 2,4-dichlorophenoxyacetic acid (2,4-D). The Ethephon effect could be attributed to volatile and nonvolatile substances. The volatile component was probably entirely ethylene. Ethylene was liberated in the cultures in direct proportion to Ethephon added to the medium. Autoclaving of Ethephon caused a substantial decrease of measurable ethylene. Continuous exposure of callus to 5 μl/l ethylene depressed somatic cell embryogenesis, but not markedly. Depression of embryogenesis by 2,4-D was unrelated to ethylene evolution.     

Plant protection and growth stimulation by microorganisms: biotechnological applications of Bacilli in agriculture

The increasing demand for a steady, healthy food supply requires an efficient control of the major pests and plant diseases. Current management practices are based largely on the application of synthetic pesticides. The excessive use of agrochemicals has caused serious environmental and health problems. Therefore, there is a growing demand for new and safer methods to replace or at least supplement the existing control strategies. Biological control, that is, the use of natural antagonists to combat pests or plant diseases has emerged as a promising alternative to chemical pesticides. The Bacilli offer a number of advantages for their application in agricultural biotechnology. Several Bacillus-based products have been marketed as microbial pesticides, fungicides or fertilisers. Bacillus-based biopesticides are widely used in conventional agriculture, by contrast, implementation of Bacillus-based biofungicides and biofertilizers is still a pending issue.     

The Effects of Uniform and Nonuniform Magnetic Fields in Plant Growth: A Meta-Analysis Approach

Magnetic field (MF) effects have been reported in plants' growth, seed germination, gene expression, and water consumption. Accordingly, magnetic treatments have been proposed as a sustainable alternative to improve yields. Nevertheless, a comprehensive quantitative assessment is needed to understand whether their effects are general, species-specific, or dependent on the experimental setting. We conducted a multilevel meta-analysis of 45 articles that studied 29 different plant species. A positive and neutral effect of a nonuniform MF was found on fresh weight and germination rate, respectively. A significant association was found between a uniform MF and germination. These results suggest that MFs improve plant growth. However, the effects are highly dependent on the experimental setting. This opens exciting questions about the biophysical mechanisms underlying the perception and transduction of this environmental cue and about the possible translation to agricultural practices. © 2023 Bioelectromagnetics Society.     

Effect of Plant Growth Promoting Bacillus Strains on Pine and Spruce Seedling Growth and Mycorrhizal Infection

Rifamycin-resistant derivatives of plant growth promotingBacilluspolymyxa strains L6, Pw-2, and S20 were used to evaluate theinteraction of bacterial–mycorrhizal co-inoculation onpine and spruce seedling growth. We were particularly interestedin determining if the mechanism by which bacteria stimulatedseedling growth depended on the presence of ectomycorrhizae.Mycorrhizal inoculum was introduced by adding 2ml of one ofsix forest floor soil types originating from different spruceand pine stands to seedling containers. Mycorrhizal roots developedin 34% of pine and 27% of spruce seedlings treated with forestsoil, but no differences between forest soils were detected.Most mycorrhizae were formed byWilcoxinasp. (E-strain) (98%for spruce and 67% for pine); small numbers ofAmphinema-like,Myceliumradicis atrovirens, Suillus-like,Thelephora-like, andTuber-likemycorrhizae were also found on pine (27% in total).Thelephora-likefungi comprised 2% of spruce mycorrhize. In the absence of bacterialinoculum, spruce seedling biomass was positively correlatedwith the number of mycorrhizal root tips, but this trend wasnot detected in spruce inoculated with bacteria or in pine.Bacterial inoculation did not influence the mycorrhizal statusof seedlings, but all threeBacillusstrains stimulated growthof both conifer species. Root biomass, in particular, was significantlyenhanced by up to 18% compared with uninoculated controls. Mycorrhizalfungi improved the growth of spruce seedlings, but plant growthpromotion byBacilluswas similar for mycorrizal and non-mycorrhizalseedlings of both species. Our results suggest thatBacillusstrainsL6-16R, Pw-2R, and S20-R enhance conifer seedling growth througha mechanism unrelated to mycorrhizal fungi. Hybrid spruce; Picea glaucaxengelmannii ; lodgepole pine; Pinus contortavar.latifoliaEngelm.; inoculation; Bacillus polymyxa; seedling growth promotion; mycorrhizae     

Inhibitory Activities of 3-Thiophenecarboxylic Acid and Related Compounds on Plant Growth

3-Thiophenecarboxylic acid (1) showed strong growth-inhibitory activity toward the following plants but not Glycine max Merrill; Brassica campestris subsp. rapa Hook. fil. et Anders, Sesamum indicum L., Lactuca sativa L. var. longifolia Lam, Echinochloa utilis Ohwi et Yabuno and Allium tuberosum Rottler. Compound 1 strongly inhibited the growth of roots of S. indicum and L. sativa even at the low concentration of 5.0 × 10^?5 m. The growth-inhibitory activity of 1-related compounds (2–6) on S. indicum was also studied. Among the compounds, 3-thiopheneacetic acid (6) showed the strongest inhibitory activity, but 3-thiophenecarboxaldehyde (2), 3-thiophenemethanol (3), and 3-thiophenecarboxamide (5) showed no activity. The radicles of plants treated with these active compounds showed negative geotropism.     

Links between Plant and Rhizoplane Bacterial Communities in Grassland Soils, Characterized Using Molecular Techniques

Molecular analysis of grassland rhizosphere soil has demonstrated complex and diverse bacterial communities, with resultant difficulties in detecting links between plant and bacterial communities. These studies have, however, analyzed “bulk” rhizosphere soil, rather than rhizoplane communities, which interact most closely with plants through utilization of root exudates. The aim of this study was to test the hypothesis that plant species was a major driver for bacterial rhizoplane community composition on individual plant roots. DNA extracted from individual roots was used to determine plant identity, by analysis of the plastid tRNA leucine (trnL) UAA gene intron, and plant-related bacterial communities. Bacterial communities were characterized by analysis of PCR-amplified 16S rRNA genes using two fingerprinting methods: terminal restriction fragment length polymorphisms (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Links between plant and bacterial rhizoplane communities could not be detected by visual examination of T-RFLP patterns or DGGE banding profiles. Statistical analysis of fingerprint patterns did not reveal a relationship between bacterial community composition and plant species but did demonstrate an influence of plant community composition. The data also indicated that topography and other, uncharacterized, environmental factors are important in driving bacterial community composition in grassland soils. T-RFLP had greater potential resolving power than DGGE, but findings from the two methods were not significantly different.     

不同有机肥影响菠萝生长的生理生化机制

以菠萝品种'澳大利亚卡因'为材料,研究了施用不同有机肥对菠萝长叶期和抽蕾期植株生长量、生理生化指标以及土壤酶活性、微生物等的影响,以探讨不同有机肥对菠萝生长的影响机理.结果显示:(1)在花生麸处理中菠萝株高、青叶数、地上部和根鲜重较对照(施用化肥)提高,而在鸡粪和水肥处理中株高、青叶数、地上部鲜重较对照降低.(2)花生麸处理的菠萝叶片细胞膜透性较对照降低,而叶绿素含量、根系活力以及叶片和根系的可溶性糖、可溶性蛋白含量、SOD活性均较对照提高;鸡粪和水肥处理的叶片细胞膜透性和根系SOD酶活性较对照提高,而叶绿素含量、根系活力、长叶期叶片和根系的可溶性糖含量、长叶期和抽蕾期叶片的可溶性蛋白含量、叶片SOD酶活性均比对照降低.(3)花生麸能提高土壤脲酶、转化酶和过氧化氢酶的活性及土壤微生物数量;鸡粪和水肥能降低土壤脲酶、蛋白酶活性,却能增强土壤转化酶、过氧化氢酶活性,鸡粪使土壤微生物数量增加,水肥使长叶期土壤微生物数量增加,但使抽蕾期的减少.研究表明,施用花生麸能提高菠萝叶绿素含量、根系活力以及叶片和根系的可溶性糖、可溶性蛋白含量,并增强根和叶的SOD活性,同时增加了土壤相关酶活性和微生物数量,从而有效促进菠萝植株生长.