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1.
Abstract.  1. Good conservation management is underpinned by a thorough understanding of species' historical and contemporary dispersal capabilities along with the possible adaptive or neutral processes behind any spatio-temporal genetic structuring. These issues are investigated with respect to the rare damselfly Coenagrion mercuriale (Charpentier) – the only odonate species currently listed in the U.K.'s Biodiversity Action Plan – in east Devon where its distribution has become fragmented.
2. The two east Devon C. mercuriale populations, only 3.5 km apart, have accumulated strong differences in frequencies of alleles at 14 microsatellite loci as a consequence of poor adult dispersal and drift. There is no contemporary migration between sites.
3. A genetic signature of population decline at both sites corresponds with known demographic reductions. Coenagrion mercuriale in east Devon are now significantly genetically less diverse than those from a population stronghold in the Itchen Valley.
4. Colonies would benefit from improved connectivity between areas and possibly by a transfer of individuals from other ecologically similar areas.
5. Because C. mercuriale has a semivoltine life cycle throughout the U.K., the possibility that alternate-year cohorts are reproductively isolated is explored. Genetic differentiation among cohorts is an order of magnitude less than between sites, suggesting that some larvae delay their development into adults for a year and recruit to a different cohort.
6. To our knowledge, this is the first study to document migration and gene flow between alternate-year cohorts in a species of odonate. From a conservation standpoint, the cohorts do not require separate management.  相似文献   

2.
Fragmentation and loss of natural habitats are recognized as major threats to contemporary flora and fauna. Detecting past or current reductions in population size is therefore a major aim in conservation genetics. Statistical methods developed to this purpose have tended to ignore the effects of spatial population structure. However in many species, individual dispersal is restricted in space and fine-scale spatial structure such as isolation by distance (IBD) is commonly observed in continuous populations. Using a simulation-based approach, we investigated how comparative and single-point methods, traditionally used in a Wright-Fisher (WF) population context for detecting population size reduction, behave for IBD populations. We found that a complex 'quartet' of factors was acting that includes restricted dispersal, population size (i.e. habitat size), demographic history, and sampling scale. After habitat reduction, IBD populations were characterized by a stronger inertia in the loss of genetic diversity than WF populations. This inertia increases with the strength of IBD, and decreases when the sampling scale increases. Depending on the method used to detect a population size reduction, a local sampling can be more informative than a sample scaled to habitat size or vice versa. However, IBD structure led in numerous cases to incorrect inferences on population demographic history. The reanalysis of a real microsatellite data set of skink populations from fragmented and intact rainforest habitats confirmed most of our simulation results.  相似文献   

3.
Anthropogenic habitat fragmentation — ubiquitous in modern ecosystems — has strong impacts on gene flow and genetic population structure. Reptiles may be particularly susceptible to the effects of fragmentation because of their extreme sensitivity to environmental conditions and limited dispersal. We investigate fine-scale spatial genetic structure, individual relatedness, and sex-biased dispersal in a large population of a long-lived reptile (tuatara, Sphenodon punctatus) on a recently fragmented island. We genotyped individuals from remnant forest, regenerating forest, and grassland pasture sites at seven microsatellite loci and found significant genetic structuring (RST = 0.012) across small distances (< 500 m). Isolation by distance was not evident, but rather, genetic distance was weakly correlated with habitat similarity. Only individuals in forest fragments were correctly assignable to their site of origin, and individual pairwise relatedness in one fragment was significantly higher than expected. We did not detect sex-biased dispersal, but natural dispersal patterns may be confounded by fragmentation. Assignment tests showed that reforestation appears to have provided refuges for tuatara from disturbed areas. Our results suggest that fine-scale genetic structuring is driven by recent habitat modification and compounded by the sedentary lifestyle of these long-lived reptiles. Extreme longevity, large population size, simple social structure and random dispersal are not strong enough to counteract the genetic structure caused by a sedentary lifestyle. We suspect that fine-scale spatial genetic structuring could occur in any sedentary species with limited dispersal, making them more susceptible to the effects of fragmentation.  相似文献   

4.
Vignieri SN 《Molecular ecology》2005,14(7):1925-1937
In species affiliated with heterogeneous habitat, we expect gene flow to be restricted due to constraints placed on individual movement by habitat boundaries. This is likely to impact both individual dispersal and connectivity between populations. In this study, a GIS-based landscape genetics approach was used, in combination with fine-scale spatial autocorrelation analysis and the estimation of recent intersubpopulation migration rates, to infer patterns of dispersal and migration in the riparian-affiliated Pacific jumping mouse (Zapus trinotatus). A total of 228 individuals were sampled from nine subpopulations across a system of three rivers and genotyped at eight microsatellite loci. Significant spatial autocorrelation among individuals revealed a pattern of fine-scale spatial genetic structure indicative of limited dispersal. Geographical distances between pairwise subpopulations were defined following four criteria: (i) Euclidean distance, and three landscape-specific distances, (ii) river distance (distance travelled along the river only), (iii) overland distance (similar to Euclidean, but includes elevation), and (iv) habitat-path distance (a least-cost path distance that models movement along habitat pathways). Pairwise Mantel tests were used to test for a correlation between genetic distance and each of the geographical distances. Significant correlations were found between genetic distance and both the overland and habitat-path distances; however, the correlation with habitat-path distance was stronger. Lastly, estimates of recent migration rates revealed that migration occurs not only within drainages but also across large topographic barriers. These results suggest that patterns of dispersal and migration in Pacific jumping mice are largely determined by habitat connectivity.  相似文献   

5.
Genetic and demographic estimates of dispersal are often thought to be inconsistent. In this study, we use the damselfly Coenagrion mercuriale (Odonata: Zygoptera) as a model to evaluate directly the relationship between estimates of dispersal rate measured during capture-mark-recapture fieldwork with those made from the spatial pattern of genetic markers in linear and two-dimensional habitats. We estimate the 'neighbourhood size' (Nb) - the product of the mean axial dispersal rate between parent and offspring and the population density - by a previously described technique, here called the regression method. Because C. mercuriale is less philopatric than species investigated previously by the regression method we evaluate a refined estimator that may be more applicable for relatively mobile species. Results from simulations and empirical data sets reveal that the new estimator performs better under most situations, except when dispersal is very localized relative to population density. Analysis of the C. mercuriale data extends previous results which demonstrated that demographic and genetic estimates of Nb by the regression method are equivalent to within a factor of two at local scales where genetic estimates are less affected by habitat heterogeneity, stochastic processes and/or differential selective regimes. The corollary is that with a little insight into a species' ecology the pattern of spatial genetic structure provides quantitative information on dispersal rates and/or population densities that has real value for conservation management.  相似文献   

6.
1. Coenagrion mercuriale is one of Europe's most threatened damselflies. There is concern for the long‐term persistence of many of its U.K. colonies because adult lifetime movement is limited, making isolated populations susceptible to extinction. 2. Using 14 microsatellite loci we characterised levels of genetic diversity, evidence for a recent decline and the spatial genetic structure for C. mercuriale population in Wales, U.K. 3. Spatial isolation is not an absolute predictor of low genetic diversity at either local or regional scales. 4. One population inhabiting a remote, edge of range site is genetically impoverished with levels of variability (at microsatellite loci) among the lowest reported for any insect species. 5. Agricultural land and high ground are physical barriers to dispersal by adults. 6. Consistent with work from elsewhere, movement by mature C. mercuriale in Pembrokeshire is sufficient to prevent significant genetic differentiation throughout a habitat matrix of some 3–4 km if the suitable habitat sites are <2 km apart and lack barriers to movement. Even within a good habitat matrix, however, genetic isolation by distance develops within 10 km.  相似文献   

7.
In general, landscape genetic studies have ignored the potential role that the phenotype of individuals plays in determining fine-scale genetic structure in species. This potential over-simplification ignores an important component that dispersal is both condition- and phenotype-dependent. In order to investigate the relationship between potential dispersal, habitat selection and phenotype, we examined the spatial ecology, body mass and fine-scale genetic structure of weasels (Mustela nivalis) in Bia?owie?a Forest in Poland. Our study population is characterized by an almost three-fold phenotypic variation in adult body mass and weasels were segregated in certain habitats according to size. We detected significant genetic structuring associated with habitat within the studied area and analyses of radio-tracking and re-capture data showed that the maximum extent of movement was achieved by weasels of medium body size, whereas the smallest and largest individuals exhibited higher site fidelity. With the unrestricted movement of the medium-sized individuals across optimal habitat, genetic admixture does occur. However, the presence of a barrier leads to unidirectional gene flow, with larger individuals outcompeting smaller individuals and therefore maintaining the genetic break in the study area. This highlights the importance of considering both intrinsic (phenotype) and extrinsic (environmental) factors in understanding dispersal patterns and ultimately, gene flow in complex landscapes.  相似文献   

8.
England PR  Whelan RJ  Ayre DJ 《Heredity》2003,91(5):475-480
Dispersal in most plants is mediated by the movement of seeds and pollen, which move genes across the landscape differently. Grevillea macleayana is a rare, fire-dependent Australian shrub with large seeds lacking adaptations for dispersal; yet it produces inflorescences adapted to pollination by highly mobile vertebrates (eg birds). Interpreting fine-scale genetic structure in the light of these two processes is confounded by the recent imposition of anthropogenic disturbances with potentially contrasting genetic consequences: (1) the unusual foraging behaviour of exotic honeybees and 2. widespread disturbance of the soil-stored seedbank by road building and quarrying. To test for evidence of fine-scale genetic structure within G. macleayana populations and to test the prediction that such structure might be masked by disturbance of the seed bank, we sampled two sites in undisturbed habitat and compared their genetic structure with two sites that had been strongly affected by road building using a test for spatial autocorrelation of genotypes. High selfing levels inferred from genotypes at all four sites implies that pollen dispersal is limited. Consistent with this, we observed substantial spatial clustering of genes at 10 m or less in the two undisturbed populations and argue that this reflects the predicted effects of both high selfing levels and limited seed dispersal. In contrast, at the two sites disturbed by road building, spatial autocorrelation was weak. This suggests there has been mixing of the seed bank, counteracting the naturally low dispersal and elevated selfing due to honeybees. Pollination between near neighbours with reduced relatedness potentially has fitness consequences for G. macleayana in disturbed sites.  相似文献   

9.
We combine spatial data on home ranges of individuals and microsatellite markers to examine patterns of fine-scale spatial genetic structure and dispersal within a brush-tailed rock-wallaby (Petrogale penicillata) colony at Hurdle Creek Valley, Queensland. Brush-tailed rock-wallabies were once abundant and widespread throughout the rocky terrain of southeastern Australia; however, populations are nearly extinct in the south of their range and in decline elsewhere. We use pairwise relatedness measures and a recent multilocus spatial autocorrelation analysis to test the hypotheses that in this species, within-colony dispersal is male-biased and that female philopatry results in spatial clusters of related females within the colony. We provide clear evidence for strong female philopatry and male-biased dispersal within this rock-wallaby colony. There was a strong, significant negative correlation between pairwise relatedness and geographical distance of individual females along only 800 m of cliff line. Spatial genetic autocorrelation analyses showed significant positive correlation for females in close proximity to each other and revealed a genetic neighbourhood size of only 600 m for females. Our study is the first to report on the fine-scale spatial genetic structure within a rock-wallaby colony and we provide the first robust evidence for strong female philopatry and spatial clustering of related females within this taxon. We discuss the ecological and conservation implications of our findings for rock-wallabies, as well as the importance of fine-scale spatial genetic patterns in studies of dispersal behaviour.  相似文献   

10.
An exciting advance in the understanding of metapopulation dynamics has been the investigation of how populations respond to ephemeral patches that go ‘extinct’ during the lifetime of an individual. Previous research has shown that this scenario leads to genetic homogenization across large spatial scales. However, little is known about fine-scale genetic structuring or how this changes over time in ephemeral patches. We predicted that species that specialize on ephemeral habitats will delay dispersal to exploit natal habitat patches while resources are plentiful and thus display fine-scale structure. To investigate this idea, we evaluated the effect of frequent colonization of ephemeral habitats on the fine-scale genetic structure of a fire specialist, the black-backed woodpecker (Picoides arcticus) and found a pattern of fine-scale genetic structure. We then tested for differences in spatial structure between sexes and detected a pattern consistent with male-biased dispersal. We also detected a temporal increase in relatedness among individuals within newly burned forest patches. Our results indicate that specialist species that outlive their ephemeral patches can accrue significant fine-scale spatial structure that does not necessarily affect spatial structure at larger scales. This highlights the importance of both spatial and temporal scale considerations in both sampling and data interpretation of molecular genetic results.  相似文献   

11.
Theory predicts source-sink dynamics can occur in species with the ideal preemptive distribution but not with the ideal free distribution. Source-sink dynamics can also occur in species with passive dispersal, in which a fixed fraction of the population disperses each generation. However, in nature, dispersal often approximates random diffusion rather than ideal choices or fixed probabilities. Here, I ask which dispersal system occurred in a butterfly (Euphydryas editha) known to have source-sink dynamics. The study used 13 experimental sites, where vacant and occupied habitat patches were juxtaposed. I estimated movement during the flight season and tested hypotheses about the type of dispersal system. Ideal free and ideal preemptive models were rejected because per capita movement rates were density independent. Passive dispersal was rejected because per capita rates were related to patch area and habitat preference. The diffusion model best explained the data because it predicted both the area relationship and an odd feature of the habitat preference: immigration was not higher in preferred habitat; rather, emigration was lower. The diffusion model implied that source-sink dynamics were driven by diffusion from areas of high to low population density. Existing source-sink theory assumes fine-scale patchiness, in which animals have perfect knowledge and ease of mobility. The results from the butterfly suggest that source-sink dynamics arise at coarser spatial scales, where diffusion models apply.  相似文献   

12.
Nonrandom dispersal has been recently advanced as a mechanism promoting fine-scale genetic differentiation in resident populations, yet how this applies to species with high rates of dispersal is still unclear. Using a migratory species considered a classical example of male-biased dispersal (the greater snow goose, Chen caerulescens atlantica ), we documented a temporally stable fine-scale genetic clustering between spatially distinct rearing sites (5–30 km apart), where family aggregates shortly after hatching. Such genetic differentiation can only arise if, in both sexes, dispersal is restricted and nonrandom, a surprising result considering that pairing occurs among mixed flocks of birds more than 3000 km away from the breeding grounds. Fine-scale genetic structure may thus occur even in migratory species with high gene flow. We further show that looking for genetic structure based on nesting sites only may be misleading. Genetically distinct individuals that segregated into different rearing sites were in fact spatially mixed during nesting. These findings provide new, scale-dependent links between genetic structure, pairing, and dispersal and show the importance of sampling different stages of the breeding cycle in order to detect a spatial genetic structure.  相似文献   

13.
L Browne  K Ottewell  J Karubian 《Heredity》2015,115(5):389-395
Habitat loss and fragmentation may impact animal-mediated dispersal of seed and pollen, and a key question is how the genetic attributes of plant populations respond to these changes. Theory predicts that genetic diversity may be less sensitive to such disruptions in the short term, whereas inbreeding and genetic structure may respond more strongly. However, results from studies to date vary in relation to species, context and the parameter being assessed, triggering calls for more empirical studies, especially from the tropics, where plant–animal dispersal mutualisms are both disproportionately common and at risk. We compared the genetic characteristics of adults and recruits in a long-lived palm Oenocarpus bataua in a recently fragmented landscape (<2 generations) in northwest Ecuador using a suite of 10 polymorphic microsatellite markers. We sampled individuals from six forest fragments and one nearby continuous forest. Our goal was to assess short-term consequences of fragmentation, with a focus on how well empirical data from this system follow theoretical expectations. Mostly congruent with predictions, we found stronger genetic differentiation and fine-scale spatial genetic structure among recruits in fragments compared with recruits in continuous forest, but we did not record differences in genetic diversity or inbreeding, nor did we record any differences between adults in fragments and adults in continuous forest. Our findings suggest that genetic characteristics of populations vary in their sensitivity to change in response to habitat loss and fragmentation, and that fine-scale spatial genetic structure may be a particularly useful indicator of genetic change in recently fragmented landscapes.  相似文献   

14.
The fragmentation of habitats by roads and other artificial linear structures can have a profound effect on the movement of arboreal species due to their strong fidelity to canopies. Here, we used 12 microsatellite DNA loci to investigate the fine-scale spatial genetic structure and the effects of a major road and a narrow artificial waterway on a population of the endangered western ringtail possum (Pseudocheirus occidentalis) in Busselton, Western Australia. Using spatial autocorrelation analysis, we found positive genetic structure in continuous habitat over distances up to 600 m. These patterns are consistent with the sedentary nature of P. occidentalis and highlight their vulnerability to the effects of habitat fragmentation. Pairwise relatedness values and Bayesian cluster analysis also revealed significant genetic divergences across an artificial waterway, suggesting that it was a barrier to gene flow. By contrast, no genetic divergences were detected across the major road. While studies often focus on roads when assessing the effects of artificial linear structures on wildlife, this study provides an example of an often overlooked artificial linear structure other than a road that has a significant impact on wildlife dispersal leading to genetic subdivision.  相似文献   

15.
Despite having winged queens, female dispersal in the monogynous ant Cataglyphis cursor is likely to be restricted because colonies reproduce by fission. We investigated the pattern of population genetic structure of this species using eight microsatellite markers and a mitochondrial DNA (mtDNA) sequence, in order to examine the extent of female and nuclear gene flow in two types of habitat. Sampling was carried out at a large spatial scale (16 sites from 2.5 to 120 km apart) as well as at a fine spatial scale (two 4.5-km transects, one in each habitat type). The strong spatial clustering of mtDNA observed at the fine spatial scale strongly supported a restricted effective female dispersal. In agreement, patterns of the mtDNA haplotypes observed at large and fine spatial scales suggested that new sites are colonized by nearby sites. Isolation by distance and significant nuclear genetic structure have been detected at all the spatial scales investigated. The level of local genetic differentiation for mitochondrial marker was 15 times higher than for the nuclear markers, suggesting differences in dispersal pattern between the two sexes. However, male gene flow was not sufficient to prevent significant nuclear genetic differentiation even at short distances (500 m). Isolation-by-distance patterns differed between the two habitat types, with a linear decrease of genetic similarities with distance observed only in the more continuous of the two habitats. Finally, despite these low dispersal capacities and the potential use of parthenogenesis to produce new queens, no signs of reduction of nuclear genetic diversity was detected in C. cursor populations.  相似文献   

16.
Agricultural intensification caused a fragmentation of flower-rich extensively used meadows which resulted in the reduction of the abundance of species of these habitats. The abundance pattern and the dispersal behaviour of species influence the connectivity of local populations. In this context exchange rates can be directly measured by mark release recapture (MRR) studies and indirectly by genetic analysis. Both approaches are used in our study in a comparative way. As a test species to investigate the influence of habitat interconnectivity on a local and regional scale, we selected the butterfly Melanargia galathea (Lepidoptera, Nymphalidae), a widely distributed species, which is common on flower-rich meadows in our study area in western Germany. We marked 3,175 individuals of four neighbouring sites in a mark-release-recapture study and analysed 18 allozyme loci for 644 individuals sampled over 17 sites. Only 3.3% of the total genetic variance was found among samples, thus supporting the detected between-patch movements. Both approaches revealed a high exchange rate among local populations. Moderate between- and high within-patch movements were recorded by MRR analysis, dependent on the geographical distance. The two analytical tools showed high estimated effective population sizes for all populations. In the light of conservation biology, the combination of the MRR and allozyme data support the assumption that high dispersal ability and habitat interconnectivity countervail genetic differentiation and enable the maintenance of a high level of genetic differentiation.  相似文献   

17.
18.
Temple HJ  Hoffman JI  Amos W 《Molecular ecology》2006,15(11):3449-3458
Dispersal is a fundamental process influencing evolution, social behaviour, and the long-term persistence of populations. We use both observational and genetic data to investigate dispersal, kin-clustering and intergroup relatedness in the white-breasted thrasher, Ramphocinclus brachyurus, a cooperatively breeding bird that is globally endangered. Mark-resighting data suggested sex-biased dispersal, with females dispersing over greater distances while males remained philopatric. Accordingly, spatial autocorrelation analysis showed highly significant fine-scale genetic structure among males, but not among females. This fine-scale genetic structuring of the male population resulted in very high levels of relatedness between dominant males at neighbouring nests, similar to that seen within cooperative groups in many species where kin selection is cited as a cause of cooperation. By implication, between-group as well as within-group cooperation may be important, potentially creating a feedback loop in which short-distance dispersal by males leads to the formation of male kin clusters that in turn facilitate nepotistic interactions and favour further local recruitment. The strength of spatial autocorrelation, as measured by the autocorrelation coefficient, r, was approximately two to three times greater than that reported in previous studies of animals. Relatively short dispersal distances by both males and females may have a negative impact on the white-breasted thrasher's ability to colonize new areas, and may influence the long-term persistence of isolated populations. This should be taken into account when designating protected areas or selecting sites for habitat restoration.  相似文献   

19.
Under the isolation-by-distance model, the strength of spatial genetic structure (SGS) depends on seed and pollen dispersal and genetic drift, which in turn depends on local demographic structure. SGS can also be influenced by historical events such as admixture of differentiated gene pools. We analysed the fine-scale SGS in six populations of a pioneer tree species endemic to Central Africa, Aucoumea klaineana. To infer the impacts of limited gene dispersal, population history and habitat fragmentation on isolation by distance, we followed a stepwise approach consisting of a Bayesian clustering method to detect differentiated gene pools followed by the analysis of kinship-distance curves. Interestingly, despite considerable variation in density, the five populations situated under continuous forest cover displayed very similar extent of SGS. This is likely due to an increase in dispersal distance with decreased tree density. Admixture between two gene pools was detected in one of these five populations creating a distinctive pattern of SGS. In the last population sampled in open habitat, the genetic diversity was in the same range as in the other populations despite a recent habitat fragmentation. This result may due to the increase of gene dispersal compensating the effect of the disturbance as suggested by the reduced extent of SGS estimated in this population. Thus, in A. klaineana, the balance between drift and dispersal may facilitate the maintenance of genetic diversity. Finally, from the strength of the SGS and population density, an indirect estimate of gene dispersal distances was obtained for one site: the quadratic mean parent-offspring distance, sigma(g), ranged between 210 m and 570 m.  相似文献   

20.
Studies investigating the genetic variation of invasive species render opportunities to better understand the dynamics of biological invasions from an ecological and evolutionary perspective. In this study, we investigate fine-scale population genetic structure of invasive Senecio madagascariensis (fireweed) using microsatellite markers to determine levels of genetic diversity and how it pertains to introduction history of this species within and among the Hawaiian Islands. Dispersal patterns were interpreted and, together with a habitat suitability analysis, we aim to describe the potential range expansion of S. madgascariensis within the islands. Bayesian and frequency-based analyses revealed genetic structure with two major genetic demes corresponding to the two fireweed-infested islands of Maui and Hawaii. Both these demes showed further genetic sub-structure, each consisting of three genetically distinct subgroups. Overall, fireweed showed significant levels of inbreeding. Major genetic demes (Maui and Hawaii) differed in observed heterozygosities, inbreeding and genetic structure, each harbouring a large proportion of private alleles. In contrast to the current understanding of fireweed’s introduction history between the Hawaiian Islands, fine-scale population genetic parameters suggest that this species has been introduced at least twice, possibly even more, to the archipelago. Spatial analyses also revealed high correlation between genetic similarity and geographical proximity (>2 km apart) followed by a sharp decline. In addition, a single population was identified that likely resulted from a rare human- or animal-mediated extreme long-distance dispersal event from Maui to Hawaii. Bayesian and likelihood estimates of ‘first generation migrants’ also concurred that contemporary dispersal occurs more frequently over smaller spatial scales than larger scales. These findings indicate that spread in this species occurs primarily via a stratified strategy. Predictions from habitat suitability models indicate all Hawaiian Islands as highly suitable for fireweed invasion and the movement of propagules to currently uninfested islands and outlying suitable habitats should be avoided to circumvent further expansions of the invasion.  相似文献   

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