Taxonomic surrogacy in biodiversity assessments,and the meaning of Linnaean ranks

The majority of biodiversity assessments use species as the base unit. Recently, a series of studies have suggested replacing numbers of species with higher ranked taxa (genera, families, etc.); a method known as taxonomic surrogacy that has an important potential to save time and resources in assesments of biological diversity. We examine the relationships between taxa and ranks, and suggest that species/higher taxon exchanges are founded on misconceptions about the properties of Linnaean classification. Rank allocations in current classifications constitute a heterogeneous mixture of various historical and contemporary views. Even if all taxa were monophyletic, those referred to the same rank would simply denote separate clades without further equivalence. We conclude that they are no more comparable than any other, non‐nested taxa, such as, for example, the genus Rattus and the phylum Arthropoda, and that taxonomic surrogacy lacks justification. These problems are also illustrated with data of polychaetous annelid worms from a broad‐scale study of benthic biodiversity and species distributions in the Irish Sea. A recent consensus phylogeny for polychaetes is used to provide three different family‐level classifications of polychaetes. We use families as a surrogate for species, and present Shannon‐Wiener diversity indices for the different sites and the three different classifications, showing how the diversity measures rely on subjective rank allocations.     

Invertebrate diversity on

Despite the global importance of New Zealands invertebrates, relatively little is known about them and their relationships with plants and plant communities in native habitats. Invertebrate diversity was examined by beating randomly chosen shrubs of the species Olearia bullata (Asteraceae) and Coprosma propinqua(Rubiaceae). Invertebrate taxon richness was assessed initially using morphospecies, which were identified subsequently by expert taxonomists. Though the taxon richness of invertebrates recorded from O. bullata was not significantly higher than that on C. propinqua (except for the orders Diptera and Hemiptera), there was a clear indication that O. bullata hosts a higher diversity of invertebrates. Mean number of taxa per shrub for O. bullata was higher in all cases (except Coleoptera), and so was the maximum number of taxa per shrub. Overall, O. bullata yielded 115 invertebrate taxa compared with 93 for C. propinqua. Moreover, 50 invertebrate taxa were restricted to O. bullata compared with 28 for C. propinqua. Since at least ten species of Oleariaare threatened or uncommon, this could be cause for concern with respect to the maintenance of invertebrate diversity. Therefore, sites where Oleariaspecies are still present are likely to be of significance for invertebrate conservation.     

Current patterns of macroalgal diversity and biomass in northern hemisphere rocky shores

Latitudinal gradients in species abundance and diversity have been postulated for nearshore taxa but few analyses have been done over sufficiently broad geographic scales incorporating various nearshore depth strata to empirically test these gradients. Typically, gradients are based on literature reviews and species lists and have focused on alpha diversity across the entire nearshore zone. No studies have used a standardized protocol in the field to examine species density among sites across a large spatial scale while also focusing on particular depth strata. The present research used field collected samples in the northern hemisphere to explore the relationships between macroalgal species density and biomass along intertidal heights and subtidal depths and latitude. Results indicated no overall correlations between either estimates of species density or biomass with latitude, although the highest numbers of both were found at mid-latitudes. However, when strata were examined separately, significant positive correlations were found for both species numbers and biomass at particular strata, namely the intertidal ones. While the data presented in this paper have some limitations, we show that latitudinal macroalgal trends in species density and biomass do exist for some strata in the northern hemisphere with more taxa and biomass at higher latitudes.     

Benthic macroinvertebrate distributions in the riffle-pool communities of two east Texas streams

The benthic macroinvertebrate riffle-pool communities of two east Texas streams were sampled monthly for a period of one year. In contrast to previous studies in primarily upland areas, pools in Alazan Creek and Bernaldo Bayou contained significantly higher densities and biomass, as well as a significantly higher diversity and number of taxa. The majority of taxa collected could be characterized as pool adapted organisms, with the Diptera, Ephemeroptera, Coleoptera, and Odonata having greater numbers in pools. Perlesta, Baetis, and Cheumatopsyche were the only genera to have significant numbers in riffles at both sampling sites. A greater number of taxa were restricted to pools at both sampling locations, and although an unstable, sandy substrate was a factor in limiting colonization of riffles, riffles were not as productive as pools even in the presence of suitable substrate conditions. A cluster analysis based on similarity indices indicated that like habitats between streams were more similar to each other, than were adjacent riffle-pool complexes within streams.     

Can higher taxa be used as a surrogate for species-level data in biodiversity surveys of litter/soil insects?

We investigate the usefulness of higher taxa as surrogates for species richness and diversity of litter/soil insects. We use data for Coleoptera (beetles) and Formicidae (ants) collected during biodiversity surveys of five tropical and two temperate countries, and use Pearson’s product moment correlations to assess the surrogacy relationship. Our results suggest that genera would provide an adequate surrogate for species richness of Coleoptera, but not for Formicidae. We suggest that the usefulness of higher taxa as surrogates for richness is dependent on both taxonomy and scale. Higher taxa provided a poor surrogate for species diversity due to the added dimension of evenness of community structure, and we recommend that higher taxa should not be used as surrogates for species diversity.     

新疆蚜虫的物种多样性研究

从分类阶元、寄主植物和寄生部位等角度系统研究了新疆蚜虫类昆虫的物种多样性,共发现蚜虫5科57属183种,寄主植物55科192属.无论在属级水平还是在种级水平,蚜科均有绝对优势,分别占新疆所有属数和种数的64.90%和65.60%.结果表明,新疆蚜虫的地理分布具有明显的纬度和经度梯度性,这与天山山脉在新疆的地理位置和走向是紧密相关的.另外,受植被分布和人类活动的影响,新疆蚜虫还具有明显的岛屿状分布特征.     

Species-genus ratios reflect a global history of diversification and range expansion in marine bivalves

The distribution of marine bivalve species among genera and higher taxa takes the form of the classic hollow curve, wherein few lineages are species rich and many are species poor. The distribution of species among genera (S/G ratio) varies with latitude, with temperate S/G's falling within the null expectation, and tropical and polar S/G's exceeding it. Here, we test several hypotheses for this polar overdominance in the species richness of small numbers of genera. We find a significant positive correlation between the latitudinal range of a genus and its species richness, both globally and within regions. Genus age and species richness are also positively related, but this relationship breaks down when the analysis is limited to genera endemic to climate zones or with narrow latitudinal ranges. The data suggest a link between speciation and range-expansion, with genera expanding out of the tropical latitudinal bins tending to speciate more prolifically, both globally and regionally. These genera contain more species within climate zones than taxa endemic to that zone. Range expansion thus appears to be fundamentally coupled with speciation, producing the skewed distribution of species among genera, both globally and regionally, whereas clade longevity is achieved through extinction -- resistance conferred by broad geographical ranges.     

Diversity in the Monogenea and Digenea: does lifestyle matter?

If the cestodes are excluded, then the parasitic platyhelminths of fishes divide neatly into the external and monoxenous Monogenea and the internal and heteroxenous Digenea. Both groups have apparently had long associations of coevolution, host switching and adaptation with fishes and have become highly successful in their respective habitats. Current estimates of species richness for the two groups suggest that they may be remarkably similar. Here we consider the nature of the diversity of the Monogenea and Digenea of fishes in terms of richness of species and higher taxa to determine what processes may be responsible for observed differences. The Monogenea includes at least two super-genera (Dactylogyrus and Gyrodactylus) each of which has hundreds of species; no comparable genera are found in the Digenea. Possible reasons for this difference include the higher host specificity of monogeneans and their shorter generation time. If allowance is made for the vagaries of taxonomic 'lumping' and 'splitting', then there are probably comparable numbers of families of monogeneans and digeneans in fishes. However, the nature of the families differ profoundly. Richness in higher taxa (families) in the Digenea is explicable in terms of processes that appear to have been unimportant in the Monogenea. Readily identifiable sources of diversity in the Digenea are: recolonisation of fishes by taxa that arose in association with tetrapods; adoption of new sites within hosts; adoption of new diets and feeding mechanisms; adaptations relating to the exploitation of ecologically similar groups of fishes and second intermediate hosts; and adaptations relating to the exploitation of phylogenetic lineages of molluscs. In contrast, most higher- level monogenean diversity (other than that associated with the subclasses) relates principally to morphological specialisation for attachment by the haptor.     

Are patterns in the taxonomic,biological and ecological traits of water beetles congruent in Mediterranean ecosystems?

1. Coleoptera species show considerable diversity in life histories and ecological strategies, which makes possible their wide distribution in freshwater habitats, including highly stressed ones such as saline or temporary waterbodies. Explaining how particular combinations of traits allow species to occupy distinctive habitats is a central question in ecology. 2. A total of 212 sites, sampled over a wide range of inland aquatic habitats in the south‐eastern Iberian Peninsula, yielded 272 species belonging to 68 genera and 11 families. The affinities of genera for 11 biological and 11 ecological traits, gathered from literature and the authors’ own expertise, were used to assess the degree of congruence between taxonomic, biological and ecological traits. 3. Taxonomic richness was significantly related to the number of both biological and ecological trait categories, with the richest families also showing the highest functional and ecological diversity. A fuzzy correspondence analysis performed on the abundance‐weighed array of biological traits separated genera according to categories of diet, feeding habits, respiration, reproduction and locomotion. A similar analysis of ecological traits revealed that preferences related to longitudinal distribution (headwater to mouth), local habitat and current velocity best discriminated genera. At the family level, there was a distinctive functional grouping of genera based on biological traits. Only Elmidae showed noticeable homogeneity across genera for both biological and ecological traits. 4. Co‐inertia analysis demonstrated a significant match between biological and ecological traits (Rv‐correlation = 0.35, P < 0.001). Elmidae genera displayed the highest concordance, whereas Hydraenidae demonstrated the lowest. 5. These results indicate that the predominance of habitat filtering processes in headwater streams yields biological trait conservatism (as shown by Elmidae genera), as well as trait convergence for some specific traits (for instance, respiration) among certain Dytiscidae genera and other typical rheophilic taxa, whereas other biotic factors, such as competition among species, appear more prominent in less stressed habitats. Further knowledge of traits, especially regarding physiological capabilities, is needed to better understand water beetle life history strategies.     

Diversity and habitat relationships of hypogeous fungi. I. Study design, sampling techniques and general survey results

Hypogeous fungi are a large yet unknown component of biodiversity in forests of south-eastern mainland Australia. To better define their diversity and habitat relationships, we identified and counted fruit-bodies at 136 study sites sampling the climatic, geological and topographic features of the region. In one year 7451 fruit-bodies representing 209 species were collected in an autumn and spring sampling period. Only 57 of these species were previously described. Within genera, the number of species ranged from 1 to 21. Sites sampled in autumn averaged higher diversity of species and greater number of fruit-bodies than the same sites sampled in spring. Most major taxa occurred at more sites in autumn than in spring, whereas a few occurred more frequently in spring than in autumn. These patterns are consistent with those identified in previous smaller studies and likely reflect seasonal changes in soil moisture and temperature levels. Subsequent papers will explore factors influencing the occurrence, relative abundance and numbers of species of hypogeous fungi at the study sites and their community structure and possible host–plant relationships.     

Do protected areas in urban and rural landscapes differ in species diversity?

Previous studies from Central Europe and North America showed that species richness is higher in urban than in rural landscapes. Do protected areas, which can be found in both city and countryside, reflect this species richness pattern? The impact of urban land-use might reduce conservation success and necessitate special management strategies. We compared species richness and species spatial turnover of selected animal and plant taxa (carabids, butterflies, snails, birds, lichens, mosses, vascular plants) in 30 protected areas in the city of Halle and 56 protected areas in the adjacent rural district of Saalkreis (Central Germany). Species were mapped by experienced biologists within a systematic species inventory. We corrected species numbers for the effects of landscape structure (e.g. size, shape and distance of habitats) which might influence species diversity beyond urbanisation effects. Butterflies, birds and lichens had significantly higher species numbers in the rural protected areas. Species spatial turnover was higher among urban areas than among rural areas or pairs of urban and rural areas for most taxa. Diversity in all taxa depended on the size of a protected area. We discussed these patterns in the context of the general urban-rural species diversity patterns. Our results indicate an increasing isolation of species assemblages with urbanisation and highlight that space for protected areas is even more limited in urban than rural areas. An effective conservation of urban species diversity should include both typical urban and semi-natural habitats to cover the full range of species living in cities.     

Aquatic insect diversity in a tropical Vietnamese stream in comparison with that in a temperate Korean stream

A comparative investigation on aquatic insect diversity was conducted in a tropical stream in Southeast Asia (the Dak Pri stream in southern Vietnam; stream orders II–V, two sites per stream order) with a reference temperate stream in Northeast Asia (the Gapyeong stream in central Korea) in March 2001 and April 2000, respectively. The numbers of aquatic insect taxa in Dak Pri stream (268 species, mostly undescribed, 230 genera, 91 families, and 9 orders; 110.5 ± 17.1 species per site) were about twice those in Gapyeong stream (133 species, 98 genera, 51 families, and 8 orders; 60.3 ± 8.5 species per site). Coleoptera, Trichoptera, Ephemeroptera, and Diptera were the major aquatic insect orders with high taxonomic richness, and Coleoptera, Odonata, and Hemiptera contributed to the higher degree of aquatic insect diversity in Dak Pri stream. The species diversity indices of Dak Pri stream (4.37 ± 0.19) were higher than those of Gapyeong stream (3.73 ± 0.42), whereas the dominance indices of Dak Pri stream (0.195 ± 0.046) were lower than those of Gapyeong stream (0.346 ± 0.113). Collector-gatherers were predominant in both streams; shredders were more abundant in Dak Pri stream while scrapers were more abundant in Gapyeong stream. Factors affecting the higher degree of aquatic insect diversity in Dak Pri stream are discussed.     

Global diversity of aloricate Oligotrichea (Protista, Ciliophora, Spirotricha) in marine and brackish sea water

Oligotrichids and choreotrichids are ciliate taxa contributing to the multi-step microbial food web and episodically dominating the marine microzooplankton. The global diversity and distribution of aloricate Oligotrichea are unknown. Here, the geographic ranges of the 141 accepted species and their synonyms in marine and brackish sea water are analyzed, using hundreds of taxonomical and ecological studies; the quality of the records is simultaneously evaluated. The aloricate Oligotrichea match the moderate endemicity model, i.e., the majority (94) of morphospecies has a wide, occasionally cosmopolitan distribution, while 47 morphospecies show biogeographic patterns: they are restricted to single geographic regions and probably include 12 endemic morphospecies. These endemics are found in the Antarctic, North Pacific, and Black Sea, whereas the "flagship" species Strombidinopsis cercionis is confined to the Caribbean Sea. Concerning genera, again several geographic patterns are recognizable. The species richness is distinctly lower in the southern hemisphere than in the northern, ranging from nine morphospecies in the South Pacific to 95 in the North Atlantic; however, this pattern is probably caused by undersampling. Since the loss of species might affect higher trophical levels substantially, the aloricate Oligotrichea should not any longer be ignored in conservation issues. The ecophysiological diversity is considerably larger than the morphological, and even tops the richness of SSrRNA and ITS haplotypes, indicating that probably more than 83-89% of the diversity in aloricate Oligotrichea are unknown. The huge challenge to discover all these species can only be managed by combining the expertises of morphological taxonomists, molecular biologists, ecologists, and physiologists.     

Do biodiversity hotspots match with rodent conservation hotspots?

Biodiversity hotspots are used widely to designate priority regions for conservation efforts. It is unknown, however, whether the current network of hotspots adequately represents globally threatened taxonomic diversity for whole plant and animal groups. We used a mammalian group traditionally neglected in terms of conservation efforts, the rodents, in order to test whether biodiversity hotspots match the current distribution of threatened taxa (genera and species). Significantly higher numbers of threatened rodent genera and species fell within biodiversity hotspots; nonetheless over 25% of the total threatened genera and species did not occur in any biodiversity hotspot. This was particularly true for the Australian region, where 100% of the threatened genera and species fell outside biodiversity hotspots, with many threatened taxa found in Papua-New Guinea. We suggest to officially including Papua New Guinea among biodiversity hotspots for rodents, and also the steppic/semidesert areas of central Asia.     

中国高等植物多样性编目进展

中国高等植物多样性编目是“中国生物物种名录”项目中的重要组成部分, 旨在后植物志时代对中国高等植物的物种名录进行修订和年度更新。自2017年深圳国际植物学大会以来, 中国高等植物物种名录已进行了5次年度更新。名录参考最新的植物分类学研究进展, 对各大类群全面采用有分子证据的新分类系统, 收录5年来发表的中国植物新类群和新记录, 补充往年遗漏的部分类群, 并依据新的专科专属的修订结果对发生属间分类变动的类群进行了更新。目前的中国高等植物物种名录包含角苔类4科9属27种, 苔类62科170属1,081种94个种下等级, 藓类94科453属2,006种154个种下等级, 石松类3科12属165种4个种下等级, 蕨类38科177属2,215种228个种下等级, 裸子植物10科45属291种118个种下等级, 被子植物272科3,409属32,708种6,909个种下等级, 共计483科4,275属38,493种7,507个种下等级, 较5年前增加了19科270属2,334种。     

Diversity and distribution of oribatid mites (Acari:Oribatida) in a lowland rain forest in Peru and in several environments of the Brazilians states of Amazonas, Rond?nia, Roraima and Pará.

We are summarizing the current state of knowledge of the diversity and distribution of oribatid mites in 26 environments in northern Brazil and of a rain forest in Peru. The published studies were mostly concentrated in Central Amazon. Only one report is a result from an agricultural polyculture. We are providing the first lists of species for savannas and for the Brazilian states of Roraima and Pará. Up to date, 146 species are definitively identified from a total of 444 taxa with 188 known genera, reinforcing the notion of a rich biodiverse area. The high number of 298 non-described species (morphospecies) clearly shows the inadequacy of the current taxonomic knowledge for the region. Most of the registers are from forest environments. In the soil from primary forests, we registered the highest diversity (54-155 species/morphospecies). Eighty-nine species were unique to primary forests, followed by 34 for savannas, 32 in trees, 10 in "igapó", 4 in caatinga, 3 in secondary forests, two in "várzea" and one in polyculture. Twenty genera were the most speciose. The species with the largest home ranges were Rostrozetes foveolatus, Scheloribates sp. A, and Galumna sp. A. Our numbers reflect the lack of taxonomists and show that the taxonomic knowledge must be improved for the region or we will continue to work with taxonomic resolution of Order or Family and a high percentage of morphospecies, which will probably be appropriate to the question being asked in each study, but not for a comparison among environments.     

Biodiversity assessment in incomplete inventories: leaf litter ant communities in several types of Bornean rain forest

Biodiversity assessment of tropical taxa is hampered by their tremendous richness, which leads to large numbers of singletons and incomplete inventories in survey studies. Species estimators can be used for assessment of alpha diversity, but calculation of beta diversity is hampered by pseudo-turnover of species in undersampled plots. To assess the impact of unseen species, we investigated different methods, including an unbiased estimator of Shannon beta diversity that was compared to biased calculations. We studied alpha and beta diversity of a diverse ground ant assemblage from the Southeast Asian island of Borneo in different types of tropical forest: diperocarp forest, alluvial forest, limestone forest and heath forests. Forests varied in plant composition, geology, flooding regimes and other environmental parameters. We tested whether forest types differed in species composition and if species turnover was a function of the distance between plots at different spatial scales. As pseudo-turnover may bias beta diversity we hypothesized a large effect of unseen species reducing beta diversity. We sampled 206 ant species (25% singletons) from ten subfamilies and 55 genera. Diversity partitioning among the four forest types revealed that whereas alpha species richness and alpha Shannon diversity were significantly smaller than expected, beta-diversity for both measurements was significantly higher than expected by chance. This result was confirmed when we used the unbiased estimation of Shannon diversity: while alpha diversity was much higher, beta diversity differed only slightly from biased calculations. Beta diversity as measured with the Chao-Sørensen or Morisita-Horn Index correlated with distance between transects and between sample points, indicating a distance decay of similarity between communities. We conclude that habitat heterogeneity has a high influence on ant diversity and species turnover in tropical sites and that unseen species may have only little impact on calculation of Shannon beta diversity when sampling effort has been high.     

Ancient Origin of the Modern Deep-Sea Fauna

The origin and possible antiquity of the spectacularly diverse modern deep-sea fauna has been debated since the beginning of deep-sea research in the mid-nineteenth century. Recent hypotheses, based on biogeographic patterns and molecular clock estimates, support a latest Mesozoic or early Cenozoic date for the origin of key groups of the present deep-sea fauna (echinoids, octopods). This relatively young age is consistent with hypotheses that argue for extensive extinction during Jurassic and Cretaceous Oceanic Anoxic Events (OAEs) and the mid-Cenozoic cooling of deep-water masses, implying repeated re-colonization by immigration of taxa from shallow-water habitats. Here we report on a well-preserved echinoderm assemblage from deep-sea (1000–1500 m paleodepth) sediments of the NE-Atlantic of Early Cretaceous age (114 Ma). The assemblage is strikingly similar to that of extant bathyal echinoderm communities in composition, including families and genera found exclusively in modern deep-sea habitats. A number of taxa found in the assemblage have no fossil record at shelf depths postdating the assemblage, which precludes the possibility of deep-sea recolonization from shallow habitats following episodic extinction at least for those groups. Our discovery provides the first key fossil evidence that a significant part of the modern deep-sea fauna is considerably older than previously assumed. As a consequence, most major paleoceanographic events had far less impact on the diversity of deep-sea faunas than has been implied. It also suggests that deep-sea biota are more resilient to extinction events than shallow-water forms, and that the unusual deep-sea environment, indeed, provides evolutionary stability which is very rarely punctuated on macroevolutionary time scales.