Hydrological seasonality dictates fish fauna of the lower Araguaia River,Tocantins-Araguaia basin

Hydrological seasonality of flow dictates diversity in tropical aquatic ecosystems. Large tropical rivers and tributaries are typically more depth and shows increased flow velocity and area in flood than in dry season. A thorough analysis of seasonality effect on fish community structure can provide valuable information of major forces driving tropical communities. However, these types of analyses have been limited by poor knowledge of tropical diversity, human impacts on environment, and biased sampling methods. We used a pristine large tropical river (and tributaries) and five types (12 gill nets, beach seine nets, longlines, branch baited hooks, and cast nets) of fishing gears to present an evaluation of flow seasonality effect on fish community. We sampled fourteen sites in river channel and tributaries in the lower Araguaia River. Sampling was conducted in flood (March and May 2009) and dry (July and September 2009) seasons of a typical seasonal year. Species richness, Shannon Diversity and Evenness, mean similarity of binary data, and abundance (CPUE) were analyzed by PERMANOVA and PCoA. We also analyzed the species most correlated (by Spearman correlation rank) with flood and dry season. Features differed significantly between flood and dry seasons, but not between channel and tributaries. The composition and abundance of community, and the representative species of flood and dry changed quite along the year. Flood showed lotic-related species, and dry presented lentic-related species. Thus, we achieved an alternation of fish community between season, both for channel and tributaries.     

Seasonal environments, episodic density compensation and dynamics of structure of chiropteran frugivore guilds in Paraguayan Atlantic forest

Seasonal environmental variation experienced in the subtropics may contribute substantially to dynamics of community structure. This is particularly true for Neotropical bats because the geographic terminus of most families occurs there. Paraguayan Atlantic forest provides an ideal opportunity to evaluate effects of seasonality on structure of communities; it exhibits notable spatial and seasonal environmental variation and lies near the edge of the geographic distribution of most tropical bat species occurring there. We examined seasonality of bat populations and communities as well as correspondence to seasonal environmental conditions in eastern Paraguay. Most species exhibited lower abundances in the cool than in the warm season. Nonetheless, magnitude of differences was species-specific. Accordingly, highly significant differences between warm and cool seasons existed regarding species composition, evenness and diversity. Moreover, consistent with competition theory, magnitude of positive correlation between morphological distance and abundance and hence degree of structure was greater in the cool than warm season. Across the New World, seasonality assumes various forms (i.e. cold winters, dry and wet seasons) suggesting that better understanding of mechanistic bases of bat community structure in general may come from seasonal perspectives.     

Seasonal population and individual niche dynamics in a tetra fish in the Pantanal wetlands

In seasonal tropical regions, rainfall and/or temporary floods during the wet season generally increase the abundance and diversity of food resources to many consumers as compared to the dry season. Therefore, seasonality can affect intraspecific competition and ecological opportunity, which are two important ecological mechanisms underlying population and individual niche variations. Here, we took advantage of the strong seasonality in the Pantanal wetlands to investigate how within‐ and between‐individual diet variations relate to seasonal population niche dynamics of the tetra fish Astyanax lacustris. We quantified dietary niche using gut contents and stable isotopes. Tetras had higher gut fullness and better body condition in the wet season, suggesting that competition is more intense in the dry season. The population niche was broader in the wet season due to an increase in diet divergence between individuals, in spite of potential stronger competition in the dry season. We posit that low ecological opportunity in the dry season limits the diversifying effect of intraspecific competition, constraining population niche expansion. Our results add new insights on how seasonality affects population and individual diets, indicating that intraspecific competition and ecological opportunity interact to determine temporal niche variations in seasonal environments.     

Environmental determinants of seasonal changes in bird diversity of Mediterranean oakwoods

The strong season-to-season variation (seasonality) in abiotic factors and productivity shape the changing patterns of species distribution and diversity throughout the year in temperate ecosystems. However, the determinants of seasonal changes within animal communities have rarely been explored, and the prognosis of community variation typically relies on identifying simple factors (e.g., mean temperature) that are assumed to have a constant effect throughout the year. Here we analyze the competing and changing roles of biotic (vegetation structure and phenology) and abiotic (temperature and elevation) factors in determining the richness and nestedness of montane Mediterranean oakwoods (central Spain) bird species in winter and spring. In winter, the most energy-demanding period, birds prefer mature forests with higher nocturnal temperatures where they can minimize thermoregulation costs during the long winter nights. In spring, which is the breeding season, spatial variation of species richness and nestedness is more deterministic than in winter. Breeding birds prefer lower forests with cooler temperatures at midday (presumably to avoid summer overheating stress), less unpredictable weather, and where trees develop leaves earlier (suggesting that birds, particularly those that prey on folivorous insects, would be able to breed early in the season). Thus, although both biotic and abiotic factors take part in the assemblage of local communities, the intervening specific components vary between seasons. For example, temperature—the factor most widely used to forecast future community changes—had opposite effects in winter than in spring. These results highlight the importance of fine-grained scale studies in accounting for temporal variation to understand both current and future regional biodiversity patterns.     

Effects of Season and Vegetation Type on Community Organization of Dung Beetles in a Tropical Dry Forest1

Dung beetles are important components of most terrestrial ecosystems. In tropical rain forests, dung beetle communities can be very rich in number of species and individuals, and they are known to be useful bioindicators of habitat disturbance. In contrast, very little is known about the organization of dung beetle communities in tropical dry forests. The aim of this study was to describe in detail the dung beetle community of a Mexican tropical dry forest and to assess the relative importance of rainfall seasonality and forest structure in affecting the temporal and spatial dynamics of this community. Dung beetles were captured with pitfall traps at the beginning of the rainy season, the middle of the rainy season, and the middle of the dry season, in two distinct forest types: deciduous forest (DF) and semideciduous forest (SDF) at the Estación de Biología Chamela. Both rainfall seasonality and forest structure affected the community organization of dung beetles. During both rainy periods, 14 species were captured, but only three during the dry season. Dung beetles captured during the dry season were only found in the SDF. When comparing the beginning and the middle of the rainy season, differences in abundance and guild structure were also observed between both periods and between forest types, but these differences were much less pronounced.     

Phylogenetic analysis of partial bacterial 16S rDNA sequences of tropical grass pasture soil under Acacia tortilis subsp. raddiana in Senegal

We used direct recovery of bacterial 16S rRNA gene sequences to investigate the bacterial diversity under Acacia tortilis subsp. raddiana, a legume tree naturally growing in the dry land part of Senegal (West Africa). Microbial DNA was purified directly from soil samples and subjected to PCR with primers specific for bacterial 16S rRNA gene sequences. 16S rDNA clone libraries were constructed from two soil samples taken at two dates, i.e. June 25th 1999 (dry season) and August 28th 1999 (rainy season) at depths of 0.25-0.50 m and at 3 m distance from the stem. The 16S rDNA of 117 clones was partially sequenced. Phylogenetic analysis of these sequences revealed extensive diversity (100 phylotypes). Comparative sequence analysis of these clones identified members of the Gammaproteobacteria (35% of the phylotypes) as the most important group, followed by the Firmicutes division with 24%. Alphaproteobacteria, Betaproteobacteria, Acidobacteria and Actinobacteria were found to be less represented. Our data suggest that bacterial communities under Acacia tortilis subsp. raddiana might differ according to the season. The relative compositions of the populations is different in both samples: the Acidobacteria are present in a much higher percentage in the dry season than in the rainy season sample while the inverse effect is observed for the members of the other groups. Within the Gammaproteobacteria we found a shift between the dry season and the rainy season from pseudomonads to Acinetobacter and Escherichia related organisms.     

High butterfly beta diversity between Brazilian cerrado and cerrado–caatinga transition zones

Tropical dry forests are among the most diverse and threatened habitats in the world, yet they are rarely protected and remain poorly studied. In Brazil, dry forests are naturally fragmented and embedded within various biomes, thus making it important to assess biotic homogeneity among geographically separated forest fragments. We sampled 7732 individuals belonging to 48 species to quantify the diversity of fruit-feeding butterfly communities at four Brazilian dry forest sites, and found differences in community structure between northern and central sites. Species richness per plot was the same in both areas, but abundance per plot was higher in northern sites. Species composition differed between sites mostly due to species of Satyrinae. Additive partitioning showed that beta diversity corresponded to 70.1% of all diversity. Rather than species loss, beta diversity primarily represented species turnover that was potentially driven by differences in the surrounding habitats. Butterfly community composition and abundance were influenced by vegetation where abundance increased with tree density and basal area, and decreased with the average tree height. Butterfly species richness and abundance were higher in the wet season than in the dry season, and all species sampled in the dry season were present in the wet season. Differences in community structure across relatively short geographic distances in the same type of habitat highlight the importance of conserving tropical dry forest fragments to ensure the maintenance of butterfly diversity and, presumably, other insects.     

How much have we learned about seasonality in tropical insect abundance since Wolda (1988)?

Seasonal patterns in climatic conditions affect the life cycles and temporal patterns in the abundance of most temperate insect species. In tropical regions where there is no winter season, the situation may be different. For a better understanding of the evolution of seasonal life cycles, and the dynamics affecting temporal patterns in abundance of tropical insect populations and assemblages, it is important to study the life cycles of tropical insects and the presence or absence of seasonality in relation to climatic conditions. By reviewing studies on temporal patterns of abundance, this article examines the patterns of seasonality in adult tropical forest insects and discusses the variation in such patterns in various forest types. Seasonal and aseasonal patterns were found to be common in tropical dry and wet regions, respectively. In wet regions, which lack a distinctive dry season, there exists a wide variety of temporal patterns in addition to aseasonal patterns: distinctively seasonal and supra‐annual fluctuations in some insect species. Some of the problems of hidden ecological mechanisms underlying seasonal patterns in abundance are discussed, and the definition of seasonality in temporal patterns of insect abundance at a particular stage in the life cycle is considered. Methodological problems are also discussed.     

Climatic seasonality, resource bottlenecks, and abundance of rainforest birds: implications for global climate change

We demonstrate that within-year climatic variability, particularly rainfall seasonality, is the most significant variable explaining spatial patterns of bird abundance in Australian tropical rainforest. The likely mechanism causing this pattern is a resource bottleneck (insects, nectar, and fruit) during the dry season that limits the population size of many species. The patterns support both the diversity–climatic–stability hypothesis and the species–energy hypothesis but clearly show that seasonality in energy availability may be a more significant factor than annual totals or means. An index of dry season severity is proposed that quantifies the combined effect of the degree of dryness and the duration of the dry season. We suggest that the predicted increases in seasonality due to global climate change could produce significant declines in bird abundance, further exacerbating the impacts of decreased range size, increased fragmentation, and decreased population size likely to occur as a result of increasing temperature. We suggest that increasing climatic seasonality due to global climate change has the potential to have significant negative impacts on tropical biodiversity.     

Seasonal cycles of species diversity and similarity in a tropical butterfly community

1. Studies of seasonality in ecological diversity rarely extend over more than a few years, and few studies of seasonal diversity have explicitly investigated the influence of environmental factors on seasonal community composition, especially in tropical communities. 2. Our 10 years of monthly sampling in Amazonian Ecuador yielded 20 996 individuals of 137 fruit-feeding butterfly species. Seasonal cycles of rainfall drive annual cycles in species diversity and community similarity. Undetermined processes operating most strongly during the dry season maintain species diversity and high community similarity across years. 3. Seasonal cycles in community diversity and similarity are superimposed on a gradual decline in similarity between community samples on a decadal time-scale because of long-term changes in species abundances. 4. Monitoring and analysis of changes in community composition over a range of time-scales can be used to refine models of community dynamics by incorporating environmental factors necessary to predict the ecological impact of future climate change.     

A Jungle in There: Bacteria in Belly Buttons are Highly Diverse,but Predictable

The belly button is one of the habitats closest to us, and yet it remains relatively unexplored. We analyzed bacteria and arachaea from the belly buttons of humans from two different populations sampled within a nation-wide citizen science project. We examined bacterial and archaeal phylotypes present and their diversity using multiplex pyrosequencing of 16S rDNA libraries. We then tested the oligarchy hypothesis borrowed from tropical macroecology, namely that the frequency of phylotypes in one sample of humans predicts its frequency in another independent sample. We also tested the predictions that frequent phylotypes (the oligarchs) tend to be common when present, and tend to be more phylogenetically clustered than rare phylotypes. Once rarefied to four hundred reads per sample, bacterial communities from belly buttons proved to be at least as diverse as communities known from other skin studies (on average 67 bacterial phylotypes per belly button). However, the belly button communities were strongly dominated by a few taxa: only 6 phylotypes occurred on >80% humans. While these frequent bacterial phylotypes (the archaea were all rare) are a tiny part of the total diversity of bacteria in human navels (<0.3% of phylotypes), they constitute a major portion of individual reads (∼1/3), and are predictable among independent samples of humans, in terms of both the occurrence and evolutionary relatedness (more closely related than randomly drawn equal sets of phylotypes). Thus, the hypothesis that “oligarchs” dominate diverse assemblages appears to be supported by human-associated bacteria. Although it remains difficult to predict which species of bacteria might be found on a particular human, predicting which species are most frequent (or rare) seems more straightforward, at least for those species living in belly buttons.     

Biodiversity under rocks: the role of microhabitats in structuring invertebrate communities in Brazilian outcrops

There is little knowledge on the factors that can structure communities of tropical arthropods that live under rocks (lapidicolous communities). Using 28 rock shelters in a small granitic outcrop, we examined the relations among area, inclination, organic matter content, substrate moisture and distance from the border of the outcrop and richness and diversity of the communities. In total, we collected 1216 individuals from 106 morphospecies of Araneida, Acarina, Polyxenida, Spirostreptida, Dermaptera, Neuroptera, Orthoptera, Dictyoptera, Psocoptera, Coleoptera, Hymenoptera, Diptera, Embioptera, Homoptera, Isoptera, Heteroptera, Lepidoptera, Collembola, Nematoda and Oligochaeta. The richness and diversity of the lapidicolous communities were significantly correlated with area, inclination and distance from the edge of the outcrop in the dry season. The richness and diversity of lapidicolous communities were significantly correlated with organic matter, substrate moisture and area in the rainy season. Space availability seemed to be an important structuring factor for lapidicolous communities in the present study, the most significant variables (substrate moisture and organic matter) were related to shelter area.     

Characterization of the prokaryotic diversity through a stratigraphic permafrost core profile from the Qinghai-Tibet Plateau

Permafrost on the Qinghai-Tibet Plateau is one of the most sensitive regions to climate warming, thus characterizing its microbial diversity and community composition may be important for understanding their potential responses to climate changes. Here, we investigated the prokaryotic diversity in a 10-m-long permafrost core from the Qinghai-Tibet Plateau by restriction fragment length polymorphism analysis targeting the 16S rRNA gene. We detected 191 and 17 bacterial and archaeal phylotypes representing 14 and 2 distinct phyla, respectively. Proteobacteria was the dominant bacterial phylum, while archaeal communities were characterized by a preponderance of Thaumarchaeota. Some of prokaryotic phylotypes were closely related to characterized species involved in carbon and nitrogen cycles, including nitrogen fixation, methane oxidation and nitrification. However, the majority of the phylotypes were only distantly related to known taxa at order or species level, suggesting the potential of novel diversity. Additionally, both bacterial α diversity and community composition changed significantly with sampling depth, where these communities mainly distributed according to core horizons. Arthrobacter-related phylotypes presented at high relative abundance in two active layer soils, while the deeper permafrost soils were dominated by Psychrobacter-related clones. Changes in bacterial community composition were correlated with most measured soil variables, such as carbon and nitrogen contents, pH, and conductivity.     

Contrasting diversity patterns of breeding Anatidae in the Northern and Southern Hemispheres

For sustaining ecosystem functions and services, environmental conservation strategies increasingly target to maintain the multiple facets of biodiversity, such as functional diversity (FD) and phylogenetic diversity (PD), not just taxonomic diversity (TD). However, spatial mismatches among these components of biodiversity can impose challenges for conservation decisions. Hence, understanding the drivers of biodiversity is critical. Here, we investigated the global distribution patterns of TD, FD, and PD of breeding Anatidae. Using null models, we clarified the relative importance of mechanisms that influence Anatidae community. We also developed random forest models to evaluate the effects of environmental variables on the Anatidae TD, FD, and PD. Our results showed that geographical variation in Anatidae diversity is hemispheric rather than latitudinal. In the species‐rich Northern Hemisphere (NH), the three diversity indices decreased with latitude within the tropical zone of the NH, but increased in the temperate zone reaching a peak at 44.5–70.0°N, where functional and phylogenetic clustering was a predominant feature. In the Southern Hemisphere (SH), Anatidae diversity increased poleward and a tendency to overdispersion was common. In NH, productivity seasonality and temperature in the coldest quarter were the most important variables. Productivity seasonality was also the most influential predictor of SH Anatidae diversity, along with peak productivity. These findings suggested that seasonality and productivity, both consistent with the energy‐diversity hypothesis, interact with the varying histories to shape the contrasting hemispheric patterns of Anatidae diversity. Phylogenetic diversity (PD) and FD underdispersion, widespread across the species‐rich, seasonally productive mid‐to‐high latitudes of the NH, reflects a rapid evolutionary radiation and resorting associated with Pleistocene cycles of glaciation. The SH continents (and southern Asia) are characterized by a widespread tendency toward PD and FD overdispersion, with their generally species‐poor communities comprising proportionately more older lineages in thermally more stable but less predictably productive environments.     

Fungal endophyte communities in two tropical forests of southern India: diversity and host affiliation

Fifteen tree species from a tropical dry thorn forest and fifteen tree species from a tropical dry deciduous forest in the Mudumalai Wildlife Sanctuary, Nilgiri Biosphere Reserve, southern India, were surveyed for their foliar endophyte communities during the dry and wet seasons. Surface sterilized leaf segments of uniform dimension were plated on nutrient agar and culturable endophytes growing from the segments were identified. Endophyte diversity was greater in the dry thorn forest than in the dry deciduous forest in the dry season. Although the isolation frequency of culturable endophytes increased for both forests during the wet season, the assemblages were represented not by any unique fungal species but by the commonly occurring ones. Furthermore, although individual leaves were densely colonized by endophytes, only a few species of endophytes colonized the whole leaves; and, only a few fungal species dominated the foliar endophytic communities and were common for both forests during both dry and wet seasons. Thus, even under wet conditions that favour dispersal and infection by fungi, the endophyte diversity increased only marginally, an indication that certain tropical forests are not hyperdiverse with reference to fungal endophytes. This should be considered when using culturable endophyte diversity as a surrogate for estimating global fungal diversity.     

Diversity within cyanobacterial mat communities in variable salinity meltwater ponds of McMurdo Ice Shelf, Antarctica

This study investigated the diversity of cyanobacterial mat communities of three meltwater ponds--Fresh, Orange and Salt Ponds, south of Bratina Island, McMurdo Ice Shelf, Antarctica. A combined morphological and genetic approach using clone libraries was used to investigate the influence of salinity on cyanobacterial diversity within these ecosystems without prior cultivation or isolation of cyanobacteria. We were able to identify 22 phylotypes belonging to Phormidium sp., Oscillatoria sp. and Lyngbya sp. In addition, we identified Antarctic Nostoc sp., Nodularia sp. and Anabaena sp. from the clone libraries. Fresh (17 phylotypes) and Orange (nine phylotypes) Ponds showed a similar diversity in contrast to that of the hypersaline Salt Pond (five phylotypes), where the diversity within cyanobacterial mats was reduced. Using the comparison of identified phylotypes with existing Antarctic sequence data, it was possible to gain further insight into the different levels of distribution of phylotypes identified in the investigated cyanobacterial mat communities of McMurdo Ice Shelf.     

Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere of Quercus ilex in a mixed Mediterranean forest

We explored the changes in richness, diversity and evenness of epiphytic (on the leaf surface) and endophytic (within leaf tissues) bacteria and fungi in the foliar phyllosphere of Quercus ilex, the dominant tree species of Mediterranean forests. Bacteria and fungi were assessed during ontogenic development of the leaves, from the wet spring to the dry summer season in control plots and in plots subjected to drought conditions mimicking those projected for future decades. Our aim was to monitor succession in microbiota during the colonisation of plant leaves and its response to climate change. Ontogeny and seasonality exerted a strong influence on richness and diversity of the microbial phyllosphere community, which decreased in summer in the whole leaf and increased in summer in the epiphytic phyllosphere. Drought precluded the decrease in whole leaf phyllosphere diversity and increased the rise in the epiphytic phyllosphere. Both whole leaf bacterial and fungal richness decreased with the decrease in physiological activity and productivity of the summer season in control trees. As expected, the richness of epiphytic bacteria and fungi increased in summer after increasing time of colonisation. Under summer dry conditions, there was a positive relationship between TRF (terminal restriction fragments) richness and drought, both for whole leaf and epiphytic phyllosphere, and especially for fungal communities. These results demonstrate that changes in climate are likely to significantly alter microbial abundance and composition of the phyllosphere. Given the diverse functions and large number of phyllospheric microbes, the potential functional implications of such community shifts warrant exploration.     

Patterns of variation among forests of tropical Asian mountains,with some explanatory hypotheses

Decline in mean temperature with elevation correlates with a more or less gradual change in forest floristics mediated by minimum temperature tolerances and competition, and in its diversity, well documented on wet equatorial mountains. On the mountains of monsoon tropical Asia, the predominance of a single wet and dry season offers opportunity to relate increasing cloud and rainfall seasonality with a departure in a zonation most clearly recognised on equatorial mountains. Observations indicate that the lowland to lower montane forest transition is gradual and constant in elevation throughout the monsoon tropical Asia region, and contrasts with the variable elevation at which forest structure and physiognomy, alternatively floristics alone, changes between lower and upper equatorial montane forests. Both ecotones are observed to correlate with the elevation and seasonality at which decline in temperature daily results in condensation of water vapour into cloud, resulting in cloud shadow, and fog therefore water supply where cloud penetrates the canopy. Seasonal variation in these climatic interactions influence forest structure and physiognomy and, by mediating the interaction between vegetation and substrate, also leads to zonation in soils and consequently floristics. Historical biogeographical factors also influence zonal floristics.     

Seasonality of a Diverse Beetle Assemblage Inhabiting Lowland Tropical Rain Forest in Australia

One of the least understood aspects of insect diversity in tropical rain forests is the temporal structuring, or seasonality, of communities. We collected 29,986 beetles of 1473 species over a 4-yr period (45 monthly samples), with the aim to document the temporal dynamics of a trophically diverse beetle assemblage from lowland tropical rain forest at Cape Tribulation, Australia. Malaise and flight interception traps were used to sample adult beetles at five locations at both ground and canopy levels. Beetles were caught throughout the year, but individual species were patchy in their temporal distribution, with the 124 more abundant species on average being present only 56 percent of the time. Climatic variables (precipitation, temperature, and solar radiation) were poorly correlated with adult beetle abundance, possibly because: (1) seasonality of total beetle abundance was slight; (2) the peak activity period (September–November) did not correspond to any climatic maxima or minima; or (3) responses were nonlinear owing to the existence of thresholds or developmental time-lags. Our results do not concur with the majority of tropical insect seasonality studies suggesting a wet season peak of insect activity, perhaps because there is no uniform pattern of insect seasonally for the humid tropics. Herbivores showed low seasonality and individual species' peaks were less temporally aggregated compared to nonherbivores. Canopy-caught and larger beetles (> 5 mm) showed greater seasonality and peaked later in the year compared to smaller or ground-caught beetles. Thus seasonality of adult beetles varied according to the traits of feeding ecology, body size, and habitat strata.