Carriage of Clostridium difficile by Wild Urban Norway Rats (Rattus norvegicus) and Black Rats (Rattus rattus)

Clostridium difficile is an important cause of enteric infections in humans. Recently, concerns have been raised regarding whether animals could be a source of C. difficile spores. Although colonization has been identified in a number of domestic species, the ability of commensal pests to serve as a reservoir for C. difficile has not been well investigated. The objective of this study was to determine whether urban rats (Rattus spp.) from Vancouver, Canada, carry C. difficile. Clostridium difficile was isolated from the colon contents of trapped rats and was characterized using ribotyping, toxinotyping, and toxin gene identification. Generalized linear mixed models and spatial analysis were used to characterize the ecology of C. difficile in rats. Clostridium difficile was isolated from 95 of 724 (13.1%) rats, although prevalence differed from 0% to 46.7% among city blocks. The odds of being C. difficile positive decreased with increasing weight (odds ratio [OR], 0.67; 95% confidence interval [CI], 0.53 to 0.87), suggesting that carriage is more common in younger animals. The strains isolated included 9 ribotypes that matched recognized international designations, 5 identified by our laboratory in previous studies, and 21 “novel” ribotypes. Some strains were clustered geographically; however, the majority were dispersed throughout the study area, supporting environmental sources of exposure and widespread environmental contamination with a variety of C. difficile strains. Given that urban rats are the source of a number of other pathogens responsible for human morbidity and mortality, the potential for rats to be a source of C. difficile for humans deserves further consideration.     

Black rats (Rattus rattus) from medieval Mertola (Baixo Alentejo, Portugal)

This paper is about the analysis and interpretation of micromammal samples from archaeological sites while reporting on a black rat assemblage from XIII^th century Muslim levels in the city of Mertola. Questions concerning skeletal representation, size plus age estimations and bone fragmentation are discussed from a taphonomic standpoint. It is concluded that the tendency to interpret rodent accumulations in anthropic sites as evidence of preybird activities might be an oversimplification in need of substantial revision.     

Frequency of chromosome polymorphism in Rattus rattus collected in Japan

This paper deals with a population survey of chromosome polymorphism of Rattus rattus collected in Japan and the results of their test crosses. All the animals had diploid 42 chromosomes, but three chromosome pairs, Nos. 1, 9 and 13, were polymorphic in respect to acro- and subtelocentric chromosomes. Frequency of No. 1 chromosome polymorphism in 453 rats collected in 19 localities showed 343 rats (75.5%) with acrocentric homomorphic pair (A/A), 90 (19.9%) with aerocentric and subtelocentric heteromorphic pair (A/S) and the remaining 20 (4.4%) with subtelocentric homomorphic pair (S/S). All animals collected in northern and northwestern Japan showed only the A/A pair, while those collected in southern and southeastern Japan showed A/A, A/S and S/S polymorphism. The latter group was also classified into 3 populations (east, southeast and south) by the different frequency of the subtelocentric chromosome. Progeny tests revealed that segregation of A/A, A/S and S/S types from F₁ hybrids between various chromosome combinations was not significantly different from the theoretical one. However, the number of animals with A/S pair was always slightly higher than the other two types, while those with S/S pair slightly fewer. Local differences of the chromosome polymorphism in Japan were considered due to the result of migration and selection of the rats with S/S chromosome type.Contribution No. 817 from the National Institute of Genetics, Japan. Supported in part by a grant-in-aid from the Ministry of Education of Japan (Scientific Expedition in 1968, and No. 8801 in 1969).     

The Black Rat Rattus rattus in the United Kingdom in 1989

The loss of ground by the Black Rat in the late 1950s continued through the next decade. Since then the number of site records has fluctuated and there has been less constancy in the places recording the presence of the rat. This impermanence of populations together with their small size suggests that introductions are short lived and that the species has only a tenuous foothold in the United Kingdom today. Port records show that rats are still arriving regularly by ship and it is suggested that future developments in climate and trade might further assist entry and make the environment more favourable for the Black Rat.     

Litter stimulus factors in maternal retrieval (Rattus rattus)

Maternal retrieval by rats was compared for sedated and control pups at 2, 5, 10, and 15 days of age. The control animals were retrieved more quickly than the experimentals only on day 5. The results were interpreted as demonstrating that stimuli of the pups determining maternal care have varying effects with age.     

Shifts in an invasive rodent community favoring Black rats (Rattus rattus) following restoration of native forest

One potential, unintended ecological consequence accompanying forest restoration is a shift in invasive animal populations, potentially impacting conservation targets. Eighteen years after initial restoration (ungulate exclusion, invasive plant control, and out planting native species) at a 4 ha site on Maui, Hawai'i, we compared invasive rodent communities in a restored native dry forest and adjacent non‐native grassland. Quarterly for 1 year, we trapped rodents on three replicate transects (107 rodent traps) in each habitat type for three consecutive nights. While repeated trapping may have reduced the rat (Black rat, Rattus rattus) population in the forest, it did not appear to reduce the mouse (House mouse, Mus musculus) population in the grassland. In unrestored grassland, mouse captures outnumbered rat captures 220:1, with mice averaging 54.9 indiv./night versus rats averaging 0.25 indiv./night. In contrast, in restored native forest, rat captures outnumbered mouse captures by nearly 5:1, averaging 9.0 indiv./night versus 1.9 indiv./night for mice. Therefore, relatively recent native forest restoration increased Black rat abundance and also increased their total biomass in the restored ecosystem 36‐fold while reducing House mouse biomass 35‐fold. Such a community shift is worrisome because Black rats pose a much greater threat than do mice to native birds and plants, perhaps especially to large‐seeded tree species. Land managers should be aware that forest restoration (i.e. converting grassland to native forest) can invoke shifts in invasive rodent populations, potentially favoring Black rats. Without intervention, this shift may pose risks for intended conservation targets and modify future forest restoration trajectories.     

Invasion genetics of the introduced black rat (Rattus rattus) in Senegal,West Africa

An understanding of the evolutionary history and dynamics of invasive species is required for the construction of predictive models of future spread and the design of biological management measures. The black rat (Rattus rattus) is a major vertebrate invader with a worldwide distribution. Despite the severe ecological, economic and health impacts of this species, its evolutionary history has been little studied. We carried out extensive specimen sampling in Senegal, West Africa, and used microsatellite markers to describe the pattern and processes of invasion in this large continental area. The genetic data obtained were combined with historical knowledge concerning the presence of this species in Senegal. Data were analysed by a combination of Bayesian clustering and approximate Bayesian computation methods. The invasion pathways closely paralleled the history of human trade routes in Senegal. In several places, we detected the occurrence of multiple introductions from genetically different sources. Long‐distance migration between towns and villages was also observed. Our findings suggest that genetic bottlenecks and admixture have played a major role in shaping the genetics of invasive black rats. These two processes may generate genetic novelty and favour rapid evolution along the invasion pathways.     

Supernumerary (B-) chromosomes in the Malayan house rat,Rattus rattus diardii (Rodentia,Muridae)

Three widely separated Malayan populations of Black rat, Rattus rattus diardii (Jentink), were found to comprise individuals with supernumerary (or B) chromosomes. The number of supernumeraries varied from 0 to 4. The incidence of B's in the three populations did not differ significantly. There was also no difference between the two sexes.     

Origin of agouti-melanistic polymorphism in Wild Black Rats (Rattus rattus) inferred from Mc1r gene sequences

We examined nucleotide changes that underlie coat color variation in Black Rats (the Rattus rattus species complex), which show polymorphism in dorsal fur color, including either grayish brown (agouti) or black (melanistic) forms. We examined the full coding sequence of a gene known to produce melanism in other vertebrates-melanocortin-1-receptor gene Mc1r (954 bp) -using samples of both R. rattus (with 2n = 38) and its close relative Asian Black Rat (R. tanezumi; 2n = 42). We used 61 specimens from Japan with karyotype-known individuals and four samples from Pakistan. We found 11 allele sequences and constructed a network tree that shows two distinct clusters, with allelic segregation according to karyotype and by inference, representing the two species. We found that a nucleotide substitution from G to A at site 280, producing an amino acid change from glutamic acid to lysine, was associated with the dominant trait of the melanistic form of the coat color in R. rattus. Notably, the derived SNP 280A was found in a single allele, with the ancestral SNP 280G present in seven alleles. By contrast, all three alleles for R. tanezumi retain the ancestral SNP 280G. These results suggest a possible recent origin of melanism in R. rattus.     

Identification of glandular (preputial and clitoral) proteins in house rat (Rattus rattus) involved in pheromonal communication

Proteins (18-20 kDa) belonging to lipocalin family have been reported to act as carriers for ligands binding to pheromones in mouse urine, pig saliva, hamster vaginal fluid and human sweat, that are involved in pheromonal communication. As the preputial gland is a major pheromonal source, the present study was aimed to detect the specific protein bands (around 18-20 kDa) in the preputial and clitoral glands of the house rat, R. rattus. The amount of protein was higher in preputial gland of the male than that of female (clitoral) gland. A 20 kDa protein was noted in male and female glands; however, the intensity of the band was much higher in male than in female. In addition, 70, 60, 35 kDa bands, identified in male preputial gland, were absent in females. The presence of higher concentration of glandular proteins in the male preputial gland suggests that male rats may depend more on these glandular proteins for the maintenance of reproductive and dominance behaviours. The results further suggest that these glandular proteins (20 kDa) may act as a carrier for ligand binding.     

Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex)

Black rats are major invasive vertebrate pests with severe ecological, economic and health impacts. Remarkably, their evolutionary history has received little attention, and there is no firm agreement on how many species should be recognized within the black rat complex. This species complex is native to India and Southeast Asia. According to current taxonomic classification, there are three taxa living in sympatry in several parts of Thailand, Cambodia and Lao People's Democratic Republic, where this study was conducted: two accepted species (Rattus tanezumi, Rattus sakeratensis) and an additional mitochondrial lineage of unclear taxonomic status referred to here as ‘Rattus R3’. We used extensive sampling, morphological data and diverse genetic markers differing in rates of evolution and parental inheritance (two mitochondrial DNA genes, one nuclear gene and eight microsatellite loci) to assess the reproductive isolation of these three taxa. Two close Asian relatives, Rattus argentiventer and Rattus exulans, were also included in the genetic analyses. Genetic analyses revealed discordance between the mitochondrial and nuclear data. Mitochondrial phylogeny studies identified three reciprocally monophyletic clades in the black rat complex. However, studies of the phylogeny of the nuclear exon interphotoreceptor retinoid‐binding protein gene and clustering and assignation analyses with eight microsatellites failed to separate R. tanezumi and R3. Morphometric analyses were consistent with nuclear data. The incongruence between mitochondrial and nuclear (and morphological) data rendered R. tanezumi/R3 paraphyletic for mitochondrial lineages with respect to R. sakeratensis. Various evolutionary processes, such as shared ancestral polymorphism and incomplete lineage sorting or hybridization with massive mitochondrial introgression between species, may account for this unusual genetic pattern in mammals.