Fine-scale genetic dynamics of a dominant neotropical tree in the threatened Brazilian Atlantic Rainforest

We present a case study of the relationship between spatial genetic structure (SGS) and age structure in Protium spruceanum (Burseraceae), an insect-pollinated, mass-fruiting, and secondary bird-dispersed tree, as determined through variation in allozyme loci. Using ten polymorphic loci, we investigated spatial and temporal patterns of a genetic structure within a 40?m?×?60?m plot in a small (1.0?ha) fragment of Atlantic Rainforest to investigate the processes shaping the distribution of genetic diversity. Individuals (n?=?345) from seedlings to adults were grouped and analyzed in four diameter classes. The results showed a high average level of genetic diversity (H _e?=?0.438), but genetic diversity parameters did not vary significantly among cohorts. The spatial distribution pattern analysis of individuals showed significant levels of aggregation among small- and medium-diameter classes and random distribution among the highest diameter class, likely due to processes of competitive thinning. There was an association between demographic and SGS at short distances (less than 10?m) which is likely the consequence of restricted seed dispersal. The degree of SGS decreased across small- to large-diameter classes. We inferred that limited seed dispersal and subsequent density-dependent mortality from the family clusters are responsible for the observed changes in fine-scale SGS across different demographic classes.     

Fine-scale spatial genetic structure of Dalbergia nigra (Fabaceae), a threatened and endemic tree of the Brazilian Atlantic Forest

The Atlantic Forest is one of the most diverse ecosystems in the world and considered a hotspot of biodiversity conservation. Dalbergia nigra (Fabaceae) is a tree endemic to the Brazilian Atlantic Forest, and has become threatened due to overexploitation of its valuable timber. In the present study, we analyzed the genetic diversity and fine-scale spatial genetic structure of D. nigra in an area of primary forest of a large reserve. All adult individuals (N = 112) were sampled in a 9.3 ha plot, and genotyped for microsatellite loci. Our results indicated high diversity with a mean of 8.6 alleles per locus, and expected heterozygosity equal to 0.74. The co-ancestry coefficients were significant for distances among trees up to 80 m. The Sp value was equal to 0.017 and indirect estimates of gene dispersal distances ranged from 89 to 144 m. No strong evidence of bottleneck or effects of human-disturbance was found. This study highlights that long-term efforts to protect a large area of Atlantic Forest have been effective towards maintaining the genetic diversity of D. nigra. The results of this study are important towards providing a guide for seed collection for ex-situ conservation and reforestation programmes of this threatened species.     

Pollen morphology of the Bignoniaceae from a south Brazilian Atlantic forest

The pollen morphology of 33 species (19 genera) of Bignoniaceae native to the south Brazilian Atlantic forest was examined using light- and scanning electron microscopy. The following pollen types were established: 1. inaperturate (Adenocalymma, Clytostoma and Pithecoctenium) 2. triaperturate (A) psilate (Jacaranda) (B) microreticulate (Arrabidaea, Fridericia, Lundia, Macfadyena, Melloa, Paragonia, Schlegelia and Tynnanthus) (C) reticulate (Cybistax, Pyrostegia and Tabebuia), 3. stephanocolpate (Amphilophium, Anemopaegma and Urbanolophium), 4. perisyncolpate (Mansoa).     

Riodocea (Rubiaceae, Gardenieae), a new genus from the Brazilian Atlantic forest

The genusRiodocea is here described from material collected in the várzea forest of the Rio Doce Valley, northern Espírito Santo.Riodocea is a monotypic genus probably related to the Amazonian endemicKutchubaea. A line drawing shows general morphology and photomicrographs show pollen morphology ofRiodocea pulcherrima. Distribution maps ofRiodocea andKutchubaea are included. The valley of the Rio Doce is here included in the Bahian Hylaea, defined as a subregion of the Brazilian Atlantic forest. The connections between the Amazonian Hylaea and the Bahian Hylaea are discussed.     

Native anurans threatened by the alien tree Ligustrum lucidum in a seasonal subtropical forest

Biological Invasions - Amphibians are declining globally from diverse and complex causes, with one of the most prevalent being alien species invasion. Alien woody invaders, such as the evergreen...     

The role of very small fragments in conserving genetic diversity of a common tree in a hyper fragmented Brazilian Atlantic forest landscape

In hyper fragmented biomes, conservation of extant biota relies on preservation and proper management of remnants. The maintenance of genetic diversity and functional connectivity in a landscape context is probably key to long-term conservation of remnant populations. We measured the genetic diversity in seedlings and adults of tree Copaifera langsdorffii and evaluated whether edge and density-dependent effects drive natural regeneration in a set of very small and degraded Brazilian Atlantic forest fragments. We evaluated the role of small remnants in the conservation of genetic diversity in a hyper fragmented landscape and discuss the challenge of long-term population sustainability of such altered habitats. High genetic diversity in adults indicated these fragments are valuable targets for C. langsdorffii in situ conservation, but both genetic diversity and divergence among patches decreased in seedlings. In our landscape, regeneration increased as it neared edges and adults; suggesting this population is resilient to fragmentation. However, at a broader scale, current levels of gene flow have not been sufficient to prevent the loss of genetic diversity across generations. Restoration plans, even at a small scale, are necessary to promote fragment connectivity and spatially expand opportunities for the fairly restricted gene flow observed in this severely fragmented Brazilian Atlantic forest region.     

A small mammal community in a forest fragment, vegetation corridor and coffee matrix system in the Brazilian Atlantic forest

The objective of our work was to verify the value of the vegetation corridor in the conservation of small mammals in fragmented tropical landscapes, using a model system in the southeastern Minas Gerais. We evaluated and compared the composition and structure of small mammals in a vegetation corridor, forest fragments and a coffee matrix. A total of 15 species were recorded, and the highest species richness was observed in the vegetation corridor (13 species), followed by the forest fragments (10) and the coffee matrix (6). The absolute abundance was similar between the vegetation corridor and fragments (F = 22.94; p = 0.064), and the greatest differences occurred between the vegetation corridor and the matrix (F = 22.94; p = 0.001) and the forest fragments and the matrix (F = 22.94; p = 0.007). Six species showed significant habitat preference possibly related to the sensitivity of the species to the forest disturbance. Marmosops incanus was the species most sensitive to disturbance; Akodon montensis, Cerradomys subflavus, Gracilinanus microtarsus and Rhipidomys sp. displayed little sensitivity to disturbance, with a high relative abundance in the vegetation corridor. Calomys sp. was the species least affected by habitat disturbance, displaying a high relative abundance in the coffee matrix. Although the vegetation corridors are narrow (4 m width), our results support the hypothesis in which they work as a forest extension, share most species with the forest fragment and support species richness and abundance closer to forest fragments than to the coffee matrix. Our work highlights the importance and cost-effectiveness of these corridors to biodiversity management in the fragmented Atlantic Forest landscapes and at the regional level.     

Forms of rarity of tree species in the southern Brazilian Atlantic rainforest

The assessment of species rarity considers local abundance (scarce or abundant population), habitat affinity (stenoecious or euryecious species), and geographic distribution (stenotopic or eurytopic species). When analyzed together these variables classify species into eight categories, from common species to those having small populations, unique habitats, and restricted geographic distribution (form 7), as proposed by Rabinowitz in 1981. Based on these categories, it is possible to calculate the frequency of the different forms of rarity of the species present in a given site. The Brazilian Atlantic rainforest is considered a hotspot of the world biodiversity harboring many endemic species, which have restricted geographic distribution. Our objective was to identify the forms of rarity of tree species and their proportions in the southern portion of the Brazilian Atlantic rainforest using Rabinowitz’s forms of rarity. All the seven forms of rarity are present in the 846 tree species we analyzed: 46% eurytopic and 54% stenotopic, 73% euryecious and 27% stenoecious, 76% locally abundant and 24% locally scarce species. Eurytopic, euryecious locally abundant species accounted for 41.1%, whereas 58.9% were somehow rare: 4.5% eurytopic, euryecious locally scarce, 0.2% eurytopic, stenoecious locally abundant, 0.1% eurytopic, stenoecious locally scarce, 19.5% stenotopic, euryecious locally abundant, 8.0% stenotopic, euryecious locally scarce, 15.6% stenotopic, stenoecious locally abundant, and 11.0% stenotopic, stenoecious locally scarce. Considering that the most restrictive forms of rarity precedes extinction, the application of Rabinowitz’s system demonstrated that most tree species of the southern Brazilian Atlantic rainforest are threatened due to their restricted geographic distribution, restriction to a single habitat, reduced local abundance, or even to a combination of these variables.     

Essential oil analysis of 10 Piperaceae species from the Brazilian Atlantic forest

Three new quercetin 3,3',4'-tri-O-beta-D-glucopyranosides isolated from leaves of Eruca sativa (Mill.) were identified as quercetin 3,3',4'-tri-O-beta-D-glucopyranoside, quercetin 3'-(6-sinapoyl-O-beta-D-glucopyranosyl)-3,4'-di-O-beta-D-glucopyranoside and quercetin 3-(2-sinapoyl-O-beta-D-glucopyranosyl)-3'-(6-sinapoyl-O-beta-D-glucopyranosyl)-4'-O-beta-D-glucopyranoside. The structures were established by one- and two-dimensional 1H and 13C NMR spectra as well as b     

Habitat loss effects on spatial distribution of non-vascular epiphytes in a Brazilian Atlantic forest

The vertical distribution of the richness, abundance, and composition of epiphytic bryophytes was studied in a matrix of fragmented habitats in the Brazilian Atlantic rainforest of the Murici Ecological Station (9°11′05″–9°16′48″ S, 35°45′20″–35°55′12″ W), northeastern Brazil. The aim was to compare the horizontal (between sites) and vertical (between phorophyte heights) turnover to test a hypothesis based on niche width vulnerability. There was a highly significant decreasing of richness accompanying the loss of habitat, and the most conserved fragment housed a total richness more than 10 times higher than the less conserved fragment. Epiphytes failed to colonize lower trunks (2.1–10 m) and higher zones in most of the non-conserved fragments; they were restricted to the base (0–2 m) and displayed a clear altered floristic composition. The species with restricted ecological amplitudes such as sun and shade tolerant taxa were more negatively affected by habitat loss than generalists. Although the mean richness of generalists decreased in non conserved fragments, the proportional contribution of this guild increased, proving that these taxa are the ones which persist in disturbed sites. The forest fragments capable of harboring rich epiphyte flora in the area studied are over 300 ha in size, which is far from being a common size among Brazilian Atlantic rainforest fragments. Hence, our results highlight the need of conserving the few large remnants in this ecosystem.     

Detection and application of novel SSR markers from transcriptome data for Astronium fraxinifolium Schott,a threatened Brazilian tree species

Molecular Biology Reports - Astronium fraxinifolium is an endangered tree species from Brazil. Due to its significance in environmental reforestation, as well as the continued exploitation of its...     

In vitro plantlet regeneration of Ocotea catharinensis,an endangered Brazilian hardwood forest tree

A successful system of somatic embryogenesis is described for the forest tree Ocotea catharinensis Mez., which used mature zygotic embryo explants cultured on a modified Murashige and Skoog (MS) medium with activated charcoal, at 25°C in the dark. A medium composed of MS supplemented with 2% (w/v) sucrose, 0.3% (w/v) activated charcoal (AC), 362 M 2,4-dichlorophenoxyacetic acid (2,4-d) and 0.8% (w/v) Technical Agar Grade III was used for multiplication of embryogenic cultures. Development up to the globular-stage was achieved using Lloyd and McCown woody plant medium (WPM) with 2.0% sucrose, 0.3% AC, 181 M 2,4-d and 0.8% Technical Agar Grade III. Significant effects of media pH on differentiation of early pro-embryogenic Ocotea cell aggregates were found. Low pH of media (ca. 3–4) appeared to prevent differentiation of proembryogenic cell aggregates whereas higher pH levels (ca. 5–5.5) favoured the formation of globular structures. Once globular structures formed, they developed further to form cotyledonary somatic embryos, under the same set of culture conditions. Successful conversion of these somatic embryos to plantlets was achieved after culture on a medium composed of 1/2-strength WPM (minerals only) with 2% sucrose, 0.3% AC, 0.8% Technical Agar Grade III and 90.5 M 2,4-d, followed by transfer to a medium composed of 1/2-strength WPM (minerals only) with 2% sucrose, 0.8% Technical Agar Grade III and 0.905 M 2,4-d and 1.4 M gibberellic acid, in a 16-h photoperiod regime.     

Characterization of a bacteriocin-like substance produced by Bacillus amyloliquefaciens isolated from the Brazilian Atlantic forest.

A Bacillus strain producing a bacteriocin-like substance was characterized by biochemical profiling and 16S rDNA sequencing. Phylogenetic analysis indicated that the strain has high sequence similarity with Bacillus amyloliquefaciens. The antimicrobial substance was inhibitory to pathogenic and food-spoilage bacteria, such as Listeria monocytogenes, Bacillus cereus, Serratia marcescens, and Pasteurella haemolytica. It was stable over a wide temperature range, but lost activity when the temperature reached 121 degrees C/15 min. Maximum activity was observed at acidic and neutral pH values, but not at alkaline pH. The antimicrobial substance was sensitive to the proteolytic action of trypsin, papain, proteinase K, and pronase E. Except for iturins, other antimicrobial peptides have not been described for B. amyloliquefaciens. The identification of a bacteriocin-like inhibitory substance active against L. monocytogenes addresses an important aspect of food protection.     

In vitro conservation of Cedrela fissilis Vellozo (Meliaceae),a native tree of the Brazilian Atlantic Forest

Two in vitro conservation methods have beendeveloped for the ex situ conservation of germplasm fromCedrela fissilis, an economically important tree of theBrazilian Atlantic Forest. The first method involves the medium-term storage, at 25°C, of artificial seeds comprising alginate encapsulatedvegetative propagules (shoot tips, cotyledonary and epicotyl nodal segments).Maximum post-storage (3 months) viabilities of 96–100% wereachieved for encapsulated shoot tips and cotyledonary nodal segments stored onwater-solidified agar (at 0.4–0.7% w/v). Encapsulated shoot tips storedfor 6 months on 0.4% (w/v) agar showed the highest survival rates(44%). Seeds of C. fissilis were successfully cryopreserved(100%) after direct immersion in liquid nitrogen. Ex situstorage procedures are now available for the medium- to long-term conservationof C. fissilis. These approaches offer new opportunitiesfor the conservation, sustainable management and utilization of this valuablefast growing timber tree.