Dictyostelid cellular slime molds associated with grasslands of the central and western United States

Dictyostelid cellular slime molds (dictyostelids) associated with grassland ecosystems of the central and western United States were investigated at nine sites that included examples of the three major ecological types of grasslands (tall grass, mixed grass and short grass) generally recognized for the region. Samples of soil/humus collected from each site were examined with the Cavender method of isolating dictyostelids. For each of those six sites with well developed gallery forests present, an additional set of forest soil/humus samples was collected. A more intensive sampling effort was carried out at one site (Konza LTER) to assess the possible effects of burning and grazing on dictyostelid diversity and density. Twelve species of dictyostelids were recovered from grassland sites, whereas gallery forest sites yielded only nine species. Four cosmopolitan species (Dictyostelium giganteum, D. mucoroides, D. sphaerocephalum and Polysphondylium pallidum) were represented by the greatest densities of clones, with D. sphaerocephalum particularly common. The general pattern across all sites was that both species richness and density of dictyostelids decreased with decreasing precipitation. Samples collected from ungrazed grassland plots yielded higher numbers of both species and clones as compared to grazed plots, and the general pattern was for both values to increase as the interval between fires increased. For numbers of clones this correlation was statistically significant.     

New species of small dictyostelids from the Great Smoky Mountains National Park

Ten new species of small dictyostelids, five belonging to Acytostelium (A. anastomosans, A. longisorophorum, A. magnisorum, A. serpentarium and A. singulare) and five to Dictyostelium (D. amphisporum, D. naviculare, D. oculare, D. potamoides and D. stellatum), were isolated from forest soils in the Great Smoky Mountains National Park. These species were recovered mostly from acidic soils and at higher elevations. They represent a large group of dictyostelids of small stature (<2 mm total height) on which we are beginning to accumulate more information.     

What’s on your boots: an investigation into the role we play in protist dispersal

D. M. Wilkinson (2010, Journal of Biogeography, 37 , 393–397) suggested that anthropogenic dispersal is an understudied and potentially important factor in terrestrial protist biogeography. We investigated human footwear as a potential vector of dictyostelids, a diverse group of amoebae that includes both geographically restricted and cosmopolitan species. Eighteen pairs of boots were examined and dictyostelids were isolated from nearly all samples larger than 5.0 g. In total, six dictyostelid isolates were recovered, corresponding to four species –Dictyostelium minutum, D. sphaerocephalum, D. leptosomopsis and a new species, Polysphondylium sp. 1. Myxogastrid amoebae and acrasid‐like aggregations were also observed. Thus anthropogenic dispersal of naked amoebae appears to occur. The possible role of variations in dictyostelid fruiting body morphologies in dispersal potential is also discussed. These results support Wilkinson’s proposal and suggest that dictyostelids may be a useful group with which to study anthropogenic dispersal of terrestrial protists.     

Five new species of dictyostelid social amoebae (Amoebozoa) from Thailand

Background

Dictyostelid cellular slime molds (dictyostelids) are common inhabitants of the soil and leaf litter layer of fields and forests, along with animal dung, where they feed mostly on bacteria. However, reports on the species diversity of dictyostelids in South Asia, particularly Thailand, are limited. The research reported in this paper was carried out to increase our knowledge of the species diversity of this group of organisms in northern Thailand.

Results

Forty soil samples were collected at four localities in northern Thailand to assess the species richness of dictyostelids. These samples yielded five dictyostelid isolates that were not morphologically consistent with any described species. Based on molecular signatures, all five of these isolates were assigned to the family Cavenderiaceae, genus Cavenderia. All five share a number of morphological similarities with other known species from this family. The new taxa differ from previously described species primarily in the size and complexity of their fruiting bodies (sorocarps). This paper describes these new species (Cavenderia aureostabilis, C. bhumiboliana, C. protodigitata, C. pseudoaureostipes, and C. subdiscoidea) based on a combination of morphological characteristics and their phylogenetic positions.

Conclusions

At least 15 taxa of dictyostelids were obtained from the four localities in northern Thailand, which indicates the high level of species diversity in this region. Five species were found to be new to science. These belong to the family Cavenderiaceae, genus Cavenderia, and were described based on both morphology and phylogeny.

     

Dictyostelids from Mediterranean forests of the south of Europe

The first results of a study of dictyostelid diversity in soils of Mediterranean vegetation are presented. Surface soil samples were collected during 2003–2004 from different Mediterranean forests in Spain and Portugal and were plated out for cellular slime moulds. Isolated during this study were 14 species of dictyostelids. One species, Dictyostelium firmibasis is reported for the first time from Europe, and nine (Dictyostelium aureo-stipes, Dictyostelium sp. 1, Dictyostelium fasciculatum, Dictyostelium giganteum, Dictyostelium implicatum, Dictyostelium leptosomum, Dictyostelium sphaerocephalum, Polysphondylium candidum, Polysphondylium pallidum) are new records for the Mediterranean region. Members of the three genera Dictyostelium (ten species), Polysphondylium (three species) and Acytostelium (one species) are present in this region of the world. Comments on their diversity and distribution are included.     

Distribution and ecology of dictyostelid cellular slime molds in Great Smoky Mountains National Park

Great Smoky Mountains National Park encompasses an area of 2080 km2 in eastern Tennessee and western North Carolina between 35 degrees 28' and 35 degrees 47' N. Elevations are 270-2000 m above sea level, and the topography and vegetation are as diverse as any region of eastern North America. In 1998-2004 soil/litter samples for isolation of dictyostelid cellular slime molds were collected throughout the park. Collecting sites included examples of all major forest types along with the more common types of nonforest vegetation. More than 2300 clones of dictyostelids were recovered from 412 samples. These clones included representatives of 20 described species together with at least 10 species new to science. This total is higher than those reported for other temperate regions of the world. In general both numbers of species and numbers of clones/g of sample material decreased with increasing elevation and several species displayed a distinct preference for either the low or high end of the elevation gradient. The relatively high number of new species recovered from samples collected at high elevations is an important new finding for dictyostelid ecology and distribution.     

大头网柄菌的个体发育

【背景】网柄细胞状黏菌是生物学、细胞学及发生生物学研究中一类重要的模式生物,至今已报道了百余种,但每个种的个体发育过程不是很明晰。【目的】了解网柄细胞状黏菌的个体发育。【方法】对采自云南苍山的土壤样品进行网柄菌的分离、培养和鉴定,并详细记录其个体发育全阶段特征。在传统形态学方法基础上,对样品进行基因组18S测序,并将获得序列在GenBank注册。通过双凹载玻片及水琼脂培养基添加大肠杆菌的培养方法,显微观察样品的发育过程,包括孢子、黏变形体、集群、假原质团、拔顶、孢堆果的发育特征。【结果】分离得到大头网柄菌Dictyostelium macrocephalum;该种温度适应范围较广,是亚热带和热带的广布种;其完成一个生活循环历时3 d,接种20 h后孢子开始萌发释放黏变形体,第50 h形成集群,第56 h假原质团形成,第58 h孢堆原形成,第71 h孢堆果完全成熟。【结论】研究分离的大头网柄菌为云南省新记录种,增加了其在我国亚热带的新分布区;明确了该种的个体发育过程。     

Taxonomic survey of Drosophilidae (Diptera) from mangrove forests of Santa Catarina Island, Southern Brazil

Assemblages of drosophilids have been characterised in several environments of the Brazilian territory, like the Atlantic Rain Forest, urban areas, cerrados, the Amazon Forest, and others. The present survey is the first attempt to characterise the fauna of Drosophilidae in mangrove forests, an environment typical of tropical coasts worldwide. Twenty-eight samples were collected from the three main mangrove forests of Santa Catarina Island, southern Brazil, using banana-baited traps hung in trees. Samples were taken in January (summer), April (autumn), July (winter) and October (spring) between July 2002 and July 2005. In total, 82,942 specimens of drosophilids were caught, belonging to 69 species of six genera - Amiota Loew, Drosophila Fallén, Leucophenga Mik, Scaptodrosophila Duda, Zaprionus Coquillett and Zygothrica Wiedemann. The high abundance of D. simulans Sturtevant was remarkable, with some notable peaks of D. malerkotliana Parshad & Paika in autumn samples. Other common species were Zaprionus indianus Gupta, D. mediostriata Duda and D. willistoni Sturtevant. We also collected 45,826 flies of family Curtonotidae, the sister-group of Drosophilidae virtually absent in other environments. The assemblages of drosophilids were very similar in the three mangrove forests surveyed, despite the different surrounding environments. In general, the species sampled in the mangroves were the same as those observed in the surrounding environments, but in varying abundances. This suggests that drosophilids are differently affected by environmental pressures operating in mangroves.     

Polysphondylium multicystogenum sp. nov., a new dictyostelid species from Sierra Leone, West Africa

Polysphondylium multicystogenum, a new heterothallic species of dictyostelids, is described based on three isolates collected from soils in Sierra Leone, West Africa. This species is characterized by sorophores with a combination of clavate base and ovoid to oblong tip cell, smaller spores and abundant microcyst production under the usual culture conditions for sorocarp formation at 20 C. This is the first report of Polysphondylium producing such abundant microcysts.     

Developmental features and associated symbiont bacterial diversity in essential life cycle stages of Heterostelium colligatum

Dictyostelium discoideum is a specialized amoebozoan protist that can feed on, carry and disperse bacteria. However, the symbiont bacterial diversity in other species of dictyostelids and the diversity associated with essential life cycle stages are still unknown until now. Here, another species of dictyostelids, Heterostelium colligatum, a new record for tropical China, was isolated from the soil collected in Xishuangbanna Tropical Botanical Garden, Yunnan Province, China. We describe the complete life cycle of this species and illustrate details of spore-to-spore development. The symbiont bacterial diversity and relative abundance associated with life cycle stages of H. colligatum, including the aggregation, pseudoplasmodium, and sorocarp stages, were investigated by high throughput metagenomic techniques. H. colligatum appears to be capable of carrying different types of bacteria during its life history in addition to those used as a food resource. The dominant groups of those three stages in its life cycle were the Proteobacteria, Actinobacteria and Firmicutes. The relative abundance of the dominant phyla and shared OTUs were different for the aggregation, pseudoplasmodium, and sorocarp stages. A comparison of the symbiont bacterial assemblages associated with D. discoideum and H. colligatum indicated that different dictyostelid species carried different species of symbiont associated bacteria.     

网柄细胞状黏菌生态学的研究进展

网柄细胞状黏菌(简称网柄菌)是黏菌的第二大类群,对其生态特征的研究有助于深入了解这类生物适宜的生存条件和人类活动的影响。本文回顾了1869年至今的网柄菌生态学研究历史,从地理因素、植被因素、生物因素三个角度,探讨了影响网柄菌物种丰度和多度的生态因素,从而为土壤及凋落物中黏菌的物种多样性保护提供参考。     

Russula velenovskyi new to Japan,with phylogenetic implications of Russula species between Japanese subalpine forests and Northern Europe

To compare morphological characters and phylogenetic placement between Japanese and European Russula, 32 specimens of 12 species were collected from Japanese subalpine forests and Northern Europe. Several sequences of nrDNA ITS region (ITS) of these Russula species were obtained. High homological similarities were shown between ITS sequences of several Russula samples collected from Japanese subalpine forests, Europe and North America. These facts show distribution of the same Russula species among these areas. From morphological observations and phylogenetic analyses, two same Russula species, R. velenovskyi, and R. decolorans are found in Japan, Europe and North America. Of these, R. velenovskyi collected from Mt. Fuji, Mt. Nyukasa and Mt. Tateshina in mountainous area of central Honshu is reported as a new Japanese record.     

青海东部土壤中酵母物种多样性研究

从青海的互助、民和、门源等10个州县收集土样分离得到98株酵母菌, 利用26S rDNA D1/D2区域序列分析并结合形态学和生理生化特性对这些菌株进行了分类学研究, 探讨了青海东部土壤中酵母的物种多样性及其分布。共鉴定出10属13种(其中有两个疑似新种), 其中 Galactomyces geotrichum和Rhodotorula mucilaginosa为该地的优势种。     

Rapid inventory of the ant assemblage in a temperate hardwood forest: species composition and assessment of sampling methods

Ants are key indicators of ecological change, but few studies have investigated how ant assemblages respond to dramatic changes in vegetation structure in temperate forests. Pests and pathogens are causing widespread loss of dominant canopy tree species; ant species composition and abundance may be very sensitive to such losses. Before the experimental removal of red oak trees to simulate effects of sudden oak death and examine the long-term impact of oak loss at the Black Rock Forest (Cornwall, NY), we carried out a rapid assessment of the ant assemblage in a 10-ha experimental area. We also determined the efficacy in a northern temperate forest of five different collecting methods--pitfall traps, litter samples, tuna fish and cookie baits, and hand collection--routinely used to sample ants in tropical systems. A total of 33 species in 14 genera were collected and identified; the myrmecines, Aphaenogaster rudis and Myrmica punctiventris, and the formicine Formica neogagates were the most common and abundant species encountered. Ninety-four percent (31 of 33) of the species were collected by litter sampling and structured hand sampling together, and we conclude that, in combination, these two methods are sufficient to assess species richness and composition of ant assemblages in northern temperate forests. Using new, unbiased estimators, we project that 38-58 ant species are likely to occur at Black Rock Forest. Loss of oak from these forests may favor Camponotus species that nest in decomposing wood and open habitat specialists in the genus Lasius.     

Leaf morphological and genetic divergence in populations of Drimys (Winteraceae) in Chile

The genus Drimys is distributed in Chile from semi-arid zones to sub-Antarctic forests; there are three species of this tree, D. andina, D. confertifolia and D. winteri, the latter with varieties chilensis and winteri. Northern populations are found in small disjunct natural refuges, specifically mountain cloud forests and the bottom of ravines. The size and continuity of populations are greater in the south, where wetter conditions prevail. Morphological differences between populations have been observed, particularly between the northern populations of Fray Jorge and Talinay. This observation, led to the following questions: a) what is the level of morphological and genetic divergence among the populations of Drimys in Chile? and b) do the populations from Fray Jorge/Talinay, currently classified as D. winteri var. chilensis, differ genetically from the other populations of this variety? To answer these questions, we collected leaf samples from 37 populations of all Chilean Drimys, performed leaf morphology analysis and estimated genetic divergence using RAPD markers. We found a high degree of leaf morphological and genetic divergence between the populations of Fray Jorge/Talinay and the other Chilean species of Drimys. The morphological and genetic divergence among varieties of D. winteri was greater than that among the species of Drimys, which may indicate problems with their taxonomic classification.     

The Importance of Primary Tropical Rain Forest For Species Diversity: An Investigation Using Arboreal Ants as an example

The arboreal ant communities of a primary lowland rain forest and three differently disturbed forests that lie close together forming an anthropogenic disturbance gradient were collected with insecticide fogging. Combined samples from all trees (87 foggings) comprised 153,504 ants sorted to 331 morphospecies. The primary forest ant fauna was characterized by high species richness and 53 foggings were necessary to collect communities representatively. Another 63 species of ants were found in the disturbed forests indicating a large regional species pool that might exceed 420 species of arboreal ants. Anthropogenic disturbance caused a change in the taxonomic composition, diversity and structure of ant communities. Community size was a predictor of species richness in the severely disturbed forest types but not in the old secondary or primary forest. Ant abundance had declined significantly in the disturbed forests and only 10% of the primary forest’s species were collected in the most disturbed forest type. In each of the secondary forests a change in the frequency distribution of species was observed and a small number of species had gained numerical dominance. Analysis of species associations indicates that the strength of species interactions changed with the degree of forest disturbance. These changes were still clearly recognizable after 40 years of forest regeneration despite optimal conditions for colonization from the adjacent primary forest, demonstrating that the time scale needed for forest recovery after anthropogenic disturbance is very long.     

小兴安岭两种林地的黏菌物种多样性

黏菌广泛分布于森林生态系统中, 并在生态系统的物质循环过程中发挥重要的功能。为了探讨黏菌在小兴安岭森林中的物种多样性及其分布, 本文对该地区的汤旺河兴安石林森林公园和胜山国家级自然保护区系统开展黏菌多样性调查研究。在2个地区共采集黏菌标本248份, 基于形态学特征共鉴定出4目8科17属44种黏菌, 其中Craterium dictyosporum、垂头绒泡菌(Physarum album)和Reticularia splendens var. jurana等10个种为黑龙江省首次报道。多样性分析结果显示, 汤旺河兴安石林森林公园针阔混交林的黏菌物种多样性(36种)高于胜山国家级自然保护区红松(Pinus koraiensis)林内的黏菌物种多样性(25种), 其中两地间共有的黏菌有17种, 黏菌物种组成的相似性(C_S)为55.7%。绿绒泡菌(Physarum viride)是针阔混交林内的优势种, 蛇形半网菌(Hemitrichia serpula)是红松林内的优势种。研究结果表明植被类型对黏菌的物种组成和多样性有着重要的影响。     

Prediction of neotropical tree and liana species richness from soil and climatic data

We present an analysis of local species richness in neotropical forests, based on a number of 0.1 ha samples of woody plants collected by the late Alwyn Gentry. For each of 69 forests, soils were analysed and climatic data were collated. Using transformed independent variables and interaction terms, multiple regression equations were developed that explained the greatest possible amount of variation in species richness, and the best equations were selected on the basis of regression diagnostics. The best models are presented for (a) all neotropical forests, (b) forests west of the Andes (transandean) and (c) east of the Andes (cisandean), and for various subsets based on elevation and annual rainfall. For the whole dataset, and for most subsets, annual rainfall and rainfall seasonality were the most important variables for explaining species richness. Soil variables were correlated with precipitation — drier forests have more nutrient-rich soils. After the inclusion of rainfall variables, available soil nutrient concentrations contributed little to explaining or accounting for additional variation in species numbers, indicating that tropical forest species richness is surprisingly independent of soil quality. The results are consistent with the hypothesis that plants in mature tropical forests may obtain nutrients through the process of direct cycling, in which mineral nutrients are extracted from litterfall before they enter the soil. The strong relationship between community species richness and rainfall patterns has implications for biodiversity conservation. Wet forests with an ample year-round moisture supply harbour the greatest number of woody plant species and should be a focus of conservation efforts.Died 3 August 1993.