Residue-specific radioimmunoanalysis: a novel analytical tool. Application to the C-terminus of CCK/gastrin peptides

Five antisera directed against the common bioactive C-terminal tetrapeptide sequence of cholecystokinin (CCK) and gastrin were examined with respect to the significance of each residue for the antibody binding. Systematic substitutions and/or derivatizations of each of the four residues showed a unique pattern for each antiserum although they were raised against the same antigen and have the same sequence-specificity. The pattern of reactivity towards the related cardioexcitatory FMRF amide peptide, and analogues hereof confirmed the residue specificity of the antisera. While it is well known that even small covalent modifications of the antigen can influence the antibody binding profoundly, the great variations in significance of each residue among randomly selected antisera raised against the same antigen and specific for the same sequence has not been known so far. Hence, by appropriate combination of antisera their different residue specificity can be used for detection of amino acid substitutions or modifications. Such immunochemical sequence analysis requires only femto- or picomolar amounts of peptides, which need not necessarily be purified. Thus, residue-specific immunoanalysis may be a versatile tool in studies of species differences, phylogenesis and synthesis of peptides.     

Modifiers of mutation rate: a general reduction principle

A deterministic two-locus population genetic model with random mating is studied. The first locus, with two alleles, is subject to mutation and arbitrary viability selection. The second locus, with an arbitrary number of alleles, controls the mutation at the first locus. A class of viability-analogous Hardy-Weinberg equilibria is analyzed in which the selected gene and the modifier locus are in linkage equilibrium. It is shown that at these equilibria a reduction principle for the success of new mutation-modifying alleles is valid. A new allele at the modifier locus succeeds if its marginal average mutation rate is less than the mean mutation rate of the resident modifier allele evaluated at the equilibrium. Internal stability properties of these equilibria are also described.     

A general approach to chord length distributions applied to a hemisphere

General formulas for chord and related joint density distributions of convex volumes are derived and applied to the hemisphere. The resulting single integral for the joint chord length and beam angle distribution is evaluated analytically. The chord length distribution is obtained by the same methods by evaluating a double integral. Both results are presented graphically, and accurate agreement with norm and average chord length is exhibited. The chord distribution agrees with previous work. While not new, the general approach used here appears to be of more extensive applicability than current methods, potentially applying to all chord and related distributions of all convex volumes.     

Tyrosinase inhibition: general and applied aspects

The active site of tyrosinase is described with a view to depicting its interactions with substrates and inhibitors. Occurrence and mechanism(s) of tyrosinase-mediated browning of agrofood products are reviewed, with regard to both enzymic and chemical reactions, and their control, modulation, and inhibition. Technical and applicational implications are discussed.     

Silymarin: an insight to its formulation and analytical prospects

Silymarin, a potential phytochemical compound obtained from the seeds of Silybum marianum plant has been used as a hepatoprotective agent for more than a decade. So far, eight active components of silymarin flavonolignans have been identified, among which silibinin has been proven the most active. However, it had poor oral bioavailability due to extensive phase II metabolism, low permeability across intestinal epithelial cells, low aqueous solubility, and rapid excretion in bile and urine. Therefore it becomes necessary to understand all its formulation and analytical aspects from past to present, including all of its possible future prospects. In modern research scenario, nanotization strategies of drugs has served as a potential approach to enhance solubility, bioavailability and to develop a robust formulation. Several approaches have been utilized previously to enhance the solubility and bioavailability of silymarin to provide it a robust strength against physical, chemical, and environmental degradation. Nanoscale formulations such as nanoemulsion, nanosuspension, liposomes, and solid–lipid nanoparticles can be used to enhance solubility and to target them to desired cells with minimum harm to normal cells. However, many other approaches exist such as dendrimers, ceramic nanoparticles, and carbon nanotubes, which serve as a great vehicle in drug delivery to transport medicament at target sites. Therefore, the purpose of this review was to develop a better understanding of the problems associated with silymarin and approaches to overcome the difficulties to develop a better and stable formulation for food and pharmaceutical applications.     

Circular dichroism of polynucleotides: A general method applied to dimers

A method is described which relates the circular dichroism of a polymer to its conformation. The method takes into account near and accidental degeneracies and eliminates the artificial distinction between degenerate and nondegenerate systems. Comparison of this method with perturbation theory indicates that the errors inherent in nondegenerate perturbation theory tend to cancel when a circular dichroism spectrum is calculated. The method is applied to dinucleoside phosphates.     

Novel analytical methods applied to type 1 diabetes genome-scan data

Complex traits like type 1 diabetes mellitus (T1DM) are generally taken to be under the influence of multiple genes interacting with each other to confer disease susceptibility and/or protection. Although novel methods are being developed, analyses of whole-genome scans are most often performed with multipoint methods that work under the assumption that multiple trait loci are unrelated to each other; that is, most models specify the effect of only one locus at a time. We have applied a novel approach, which includes decision-tree construction and artificial neural networks, to the analysis of T1DM genome-scan data. We demonstrate that this approach (1) allows identification of all major susceptibility loci identified by nonparametric linkage analysis, (2) identifies a number of novel regions as well as combinations of markers with predictive value for T1DM, and (3) may be useful in characterizing markers in linkage disequilibrium with protective-gene variants. Furthermore, the approach outlined here permits combined analyses of genetic-marker data and information on environmental and clinical covariates.     

Dynamic actin interaction of crossbridges: A general principle and its implications for crossbridge action in muscle

The oar-like crossbridge cycle, developed up to the mid-1970's, was shown to be inconsistent with more recent biochemical results. In crossbridge theories developed on the basis of the more recent kinetic schemes of the actomyosin ATPase in solution (Eisenberg and co-workers), however, the key elements proposed by Huxley (1957) were retained, one of which is the assumption that detachment of a force-generating crossbridge can only occur via completion of the ATPase cycle (release of ADP and rebinding of ATP). Furthermore, in these theories regulation is assumed to act by blocking/unblocking of a step subsequent to crossbridge attachment (e.g., P_i-release step). Both concepts, however, were recently shown to be in conflict with studies on skinned muscle fibers (still low ATPase activity at high-speed isotonic shortening, regulation acts via turnover kinetics and not recruitment (39)). By incorporation of the observed reversible actin interaction of crossbridges in all states, including the force-generating states, a working hypothesis can be developed (Fig. 5) which can account for the isotonic data. A mechanism by which such a scheme can also account for regulation via turnover kinetics was previously discussed (39).     

A general approach to surface modelling applied to molecular graphics

A program is described that produces realistic representations of surfaces on a raster graphics terminal. The program uses a spatial subdivision algorithm similar to that of Woodwork and Quinlan. Simple geometric primitives, such as spheres, cones, cylinders and cuboids, are combined to build more complex pictures. This paper describes the program and how it is applied to molecular graphics. Examples of several applications are given.     

Surface analytical techniques applied to calcite: evidence of solid-state diffusion and implications for isotope methods

Surface analytical techniques have become common tools for physicists and materials scientists for making direct observations at the molecular scale but they can also provide Earth Scientists with new information about mineral/fluid interfaces. High resolution surface analysis compliments our traditional methods for analysing the bulk of solids and solutions which can give us, for example, a more complete picture of the geochemical processes that affect the mineral grains in sediments. Stable isotope methods have become widely used for dating and palaeoclimate studies but they rely on the assumption of a closed system. Artifacts resulting from carbonate mineral recrystallization can be avoided by careful sampling but ion by ion replacement can significantly alter the composition of a solid without leaving visible traces. Calcite has long been known to take up substituting ions into its atomic structure. Recent evidence gained from surface analysis shows Cd²⁺ and Zn²⁺, that had been adsorbed or precipitated on calcite surfaces, moves into calcite at the rate of nanometers per month, apparently by solid-state diffusion. No fractures that could serve as conduits from surface to bulk have ever been observed at the micrometer to nanometer scale on the single crystals used for these experiments. Mixing within the top few surface layers by reprecipitation during exposure to the humidity in air can account for some incorporation, but the evidence collected so far does not explain the exchange of position for ions beyond about ten calcite monolayers. With similar rates of movement, other trace components, such as K⁺, Na⁺, Cl^- and F^-, have been observed to move out of bulk calcite and to accumulate in discrete crystallites on surfaces exposed to air. Such mobility may be particular to these near-perfect, Iceland spar crystals and the ions investigated, but if O and C also move into and out of bulk calcite at similar rates, the integrity of isotope ratios from carbonate minerals, even from non-diagenetic environments, may be questionable.     

随机扩增多态性DNA原理及其在动物研究中的应用

RAPD(随机扩增多态性DNA)技术是一项应用日益广泛的遗传标记技术。与PCR和RFLP相比,该技术具有简便、快速、准确以及成本相对较低等特点,已成为众多分子标记技术中走向普及的先锋技术。阐述了RAPD的原理和方法,综述了RAPD目前在动物研究中的应用进展,并对RAPD技术应用前景作进一步阐述。     

预处理保护作用的普遍性及其机理探讨

本工作分别在大鼠的多种器官上观察到缺血预处理（ＰＣ）对缺血／再灌注损伤的保护作用具有器官普遍性,其对血管床的保护是其器官保护的机制之一;在体外培养的乳鼠（兔）心肌细胞及大鼠（兔）胸主动脉血管平滑肌细胞等多种细胞等多种细胞上观察到蛋白激酶Ｃ（ＰＫＣ）激活及ＰＫＣ介导的蛋白磷酸化增强是ＰＣ细胞保护的共有环节。碱性成纤维细胞生长因子可以模拟ＰＣ的细胞保护作用,提示药物预处理对于防治缺血有关的疾病可能上人     

Comparative LCA of multi-product processes with non-common products: a systematic approach applied to chlorine electrolysis technologies

Purpose

Multi-product processes are one source of multi-functionality causing widely discussed methodological problems within life cycle assessment. A multi-functionality problem exists for comparative life cycle assessment (LCA) of multi-product processes with non-common products. This work develops a systematic workflow for fixing the multi-functionality problem caused by the non-common products. A novel technology for chlor-alkali electrolysis is analyzed and compared to the industrial standard technology to illustrate the approach and to benchmark the new technology's environmental impact.

Methods

A matrix-based workflow for comparative LCA of multi-product systems is presented. Products are distinguished in main products and by-products based on the reason of process operation. We argue that only main products form the reference flows of the compared multi-product systems. Fixing the multi-functionality problem follows directly from the chosen reference flows. The framework suggests system expansion to fix the multi-functionality problem if non-common main products exist. Non-common by-products still cause a multi-functionality problem. These by-products are systematically identified and the multi-functionality problem is fixed with avoided burden and allocation. A case study applies the workflow for comparing environmental impacts of the standard chlorine electrolysis to a novel process using oxygen-depolarized cathodes. Three scenarios are derived and evaluated. The assessed impact categories are cumulative energy demand, global warming potential, acidification potential, photochemical ozone creation potential, eutrophication potential, and human toxicity potential.

Results and discussion

The proposed workflow minimizes the methodological choices. The multi-functionality problem is systematically fixed based on the distinction between the main products and by-products. Inconsistent solutions are prevented by rigorous identification of unequal by-products within the compared systems. Selecting avoided burden processes or allocation factors is the remaining ambiguous choice common to the standard methods. The case study demonstrates the applicability of the workflow to comparative LCA of multi-product systems. The case study results show lower environmental impacts for the novel electrolysis technology in all practically relevant scenarios and impact categories.

Conclusions

The framework for comparative LCA of multi-product systems with non-common products adds systematic clarity to the general ISO standards. The approach reduces the subjective choices of LCA practitioners to the identification of reason of process operation. This reason is defined if the site-specific economic conditions are known. The matrix-based formulation allows identification of inconsistencies caused by multi-functionality. For the novel electrolysis technology, the results indicate significant potential for environmental impact reduction.     

Bridging factorial and gradient concepts of resource co‐limitation: towards a general framework applied to consumers

Organism growth can be limited either by a single resource or by multiple resources simultaneously (co‐limitation). Efforts to characterise co‐limitation have generated two influential approaches. One approach uses limitation scenarios of factorial growth assays to distinguish specific types of co‐limitation; the other uses growth responses spanned over a continuous, multi‐dimensional resource space to characterise different types of response surfaces. Both approaches have been useful in investigating particular aspects of co‐limitation, but a synthesis is needed to stimulate development of this recent research area. We address this gap by integrating the two approaches, thereby presenting a more general framework of co‐limitation. We found that various factorial (co‐)limitation scenarios can emerge in different response surface types based on continuous availabilities of essential or substitutable resources. We tested our conceptual co‐limitation framework on data sets of published and unpublished studies examining the limitation of two herbivorous consumers in a two‐dimensional resource space. The experimental data corroborate the predictions, suggesting a general applicability of our co‐limitation framework to generalist consumers and potentially also to other organisms. The presented framework might give insight into mechanisms that underlie co‐limitation responses and thus can be a seminal starting point for evaluating co‐limitation patterns in experiments and nature.