Hierarchical genetic structure and gene flow in three sympatric species of Amazonian rodents

The population genetic structure of three species of Amazonian rodents ( Oligoryzomys microtis, Oryzomys capito , and Mesomys hispidus ) is examined for mtDNA sequence haplotypes of the cytochrome b gene by hierarchical analysis of variance and gene flow estimates based on fixation indices ( N _ST) and coalescence methods. Species samples are from the same localities along 1000 km of the Rio Juruá in western Amazonian Brazil, but each species differs in important life history traits such as population size and reproductive rate. Average haplotype differentiation, hierarchical haplotype apportionment, and gene flow estimates are contrasted in discussing the current and past population structure. Two species exhibit isolation by distance patterns wherein gene flow is largely limited to geographically adjacent localities. Mesomys exhibits this pattern throughout its range along the river. More than 75% of haplotype variation is apportioned among localities and regions, and estimates of Nm for pair-wise comparisons are nearly always less than 1. Oligoryzomys shows weak isolation by distance, but only over the largest geographical distances. Nm values for this species are nearly always above 1 and most (about 80%) of haplotype variation is contained within local populations. In contrast, Oryzomys exhibits no genetic structure throughout its entire distribution; Nm values average 17 and nearly 90% of the total haplotype variance is contained within local populations. Although gene flow estimates are high, the pattern of Nm as a function of geographical distance suggests that this species experienced a more recent invasion of the region and is still in genetic disequilibrium under its current demographic conditions.     

Comparison of denitrification characteristics among three habitat types of a large river floodplain: Atchafalaya River Basin,Louisiana

Mobile forms of nitrogen leach from upland environments into aquatic systems, often discharging to coastal zones. Addition of nitrogen to once N-limited systems results in a host of changes ranging from eutrophication to loss of biodiversity. Floodplains can ameliorate these changes by removing and sequestering nitrogen. In many coastal floodplains, sedimentation causes lakes to transition to baldcypress swamps, and ultimately to bottomland hardwood (BLHW) forests. These habitats differ in their contact with floodwater, which directly and indirectly affects their ability to process nutrients, but the effects of habitat change on denitrification at the floodplain scale cannot be predicted because of lack of suitable data. This study compared denitrification characteristics among the aforementioned habitats within the Atchafalaya River Basin (ARB). Microcosms were established in the laboratory, and the acetylene block technique was used to estimate four denitrification characteristics: background denitrification rates, maximum rates, time to reach maximum rates, and the linear response of denitrification to nitrate concentration. There were significant differences in denitrification characteristics among the three habitat types; specifically, all habitats differed in the time required for denitrification to respond to nitrate in the overlying water, and denitrification in lake habitats differed from both BLHWs and baldcypress swamps. Landscape-scale models should account for different linear relationships between denitrification and nitrate concentrations, and different response times to nitrate concentrations for different habitats. Because denitrification characteristics differ across habitats within the ARB, continued habitat change within the floodplain will alter nutrient discharge to coastal waters.     

Cross-species transmission of Giardia spp.: inoculation of beavers and muskrats with cysts of human, beaver, mouse, and muskrat origin

Giardia cysts isolated from humans, beavers, mice, and muskrats were tested in cross-species transmission experiments for their ability to infect either beavers or muskrats. Giardia cysts, derived from multiple symptomatic human donors and used for inoculation of beavers or muskrats, were shown to be viable by incorporation of fluorogenic dyes, excystation, and their ability to produce infections in the Mongolian gerbil model. Inoculation of beavers with 5 x 10(5) Giardia lamblia cysts resulted in the infection of 75% of the animals (n = 8), as judged by the presence of fecal cysts or intestinal trophozoites at necropsy. The mean prepatent period was 13.1 days. An infective dose experiment, using 5 x 10(1) to 5 x 10(5) viable G. lamblia cysts collected by fluorescence-activated cell sorting, demonstrated that doses of between, less than 50, and less than 500 viable cysts were required to produce infection in beavers. Scanning electron microscopy of beaver small intestine revealed that attachment of G. lamblia trophozoites produced lesions in the microvillous border. Inoculation of muskrats with G. lamblia cysts produced infections when the dose of cysts was equal to or greater than 1.25 x 10(5). The inoculation of beavers with Giardia ondatrae or Giardia muris cysts did not produce any infection; however, the administration to muskrats of Giardia cysts of beaver origin resulted in the infection of 62% of the animals (n = 8), with a prepatent period of 5 days. Our results demonstrated that beavers and muskrats could be infected with Giardia cysts derived from humans, but only by using large numbers of cysts.(ABSTRACT TRUNCATED AT 250 WORDS)     

The dynamics of coexistence: habitat sharing versus segregation patterns among three sympatric montane vipers

Contact zones of closely related and ecologically similar species constitute rare opportunities to study the evolutionary consequences of past speciation processes. They represent natural laboratories in which strong competition could lead to the exclusion of one species, or the various species may switch into distinct ecological niches. Alternatively, if reproductive isolation has not yet been achieved, they may hybridize. We elucidate the degree of taxon integrity by comparing genetics and habitat use of three similar‐sized congeneric viper species, Vipera ammodytes, Vipera aspis, and Vipera berus, of Nadiza Valley in western Slovenia. No hybridization was detected for either mitochondrial or nuclear genomes. Similarly, external intermediacy by a single prestudy viper (probably V. ammodytes × V. aspis) indicates that hybridization occasionally occurs, but should be very rare. Populations of the three related viperids are partially allopatric in Nadiza Valley, but they also coexist in a narrow contact zone in the montane grassland along the south‐exposed slope of Mount Stol (1673 m a.s.l.). Here, the three species that occupy areas in or near patches of rocky microhabitats (e.g. stone piles, slides, and walls) live in syntopy. However, fine‐scale measurements of structural components show partial habitat segregation, in which V. berus becomes more dominant at elevations above 1400 m and occupies mostly the mountain ridge and north‐exposed slopes of Mount Stol, V. aspis occurs below 1300 m and is the only species to inhabit stoneless patches of grass and bushes around 1000 m and lower, and V. ammodytes occurs at all elevations up to 1500 m, but is restricted to a rocky microhabitat. We suggest that a high degree of microstructure divergence, slightly different environmental niches, and a generally favourable habitat for all three viper species, keep the pressure for mis‐mating and hybridization low, although mechanisms such as reduced hybrid inferiority and temporal mating segregation cannot yet be excluded.     

Effect of watercourse characteristics on food-caching behaviour by European beaver, Castor fiber

We studied the relations between watercourse depth and width, and the occurrence, time of initiation and finite size of beaver food caches. Water depth was significantly greater by lodges with a food cache than at lodges lacking a food cache. There was no significant difference in watercourse width between the two groups. Date of initiation of the food cache was not related to water depth, but beavers living by wider watercourses started constructing food caches before those living on narrow watercourses. Finite size of food caches was significantly related to watercourse width and time of initiation. Results are discussed in the contexts of behavioural plasticity in overwintering strategies and habitat selection.     

Seed dispersal of three sympatric oak species by forest rodents in the Qinling Mountains, Central China

Forest rodents play an essential role as seed dispersal vectors through their caching behaviors. Using seeds of Quercus aliena, Q. glandulifera, and Cyclobalanopsis engleriana (Fagaceae), which are dominant, but poorly studied species, in the Qinling Mountains, Central China, we investigated seed predation and dispersal by forest rodents in 2010 and 2011. There were significant differences in rodent seed-eating and caching strategies among the three tree species. Seeds of Q. aliena and C. engleriana had hard coats, high nutrition contents (e.g., protein, fat, and starch), and long germination schedules (C. engleriana only). They were less frequently eaten in situ, but more likely to be eaten after removal or cached. Seeds of Q. glandulifera had soft coats and low nutrition contents and were more often eaten in situ and less likely to be eaten after removal or cached. Our findings indicated that forest rodents were primarily responsible for seed predation and dispersal of these three tree species in the Qinling Mountains, and seed traits, especially coat hardness, nutrition content, and germination schedule, were important factors influencing rodent eating and caching behaviors. In addition, seed dispersal process of each tree species differed significantly between the 2 years, reflecting the effect of mast seeding on the eating and caching strategies of forest rodents.     

Cross-species transmission of Giardia spp.: inoculation of beavers and muskrats with cysts of human, beaver, mouse, and muskrat origin.

Giardia cysts isolated from humans, beavers, mice, and muskrats were tested in cross-species transmission experiments for their ability to infect either beavers or muskrats. Giardia cysts, derived from multiple symptomatic human donors and used for inoculation of beavers or muskrats, were shown to be viable by incorporation of fluorogenic dyes, excystation, and their ability to produce infections in the Mongolian gerbil model. Inoculation of beavers with 5 x 10(5) Giardia lamblia cysts resulted in the infection of 75% of the animals (n = 8), as judged by the presence of fecal cysts or intestinal trophozoites at necropsy. The mean prepatent period was 13.1 days. An infective dose experiment, using 5 x 10(1) to 5 x 10(5) viable G. lamblia cysts collected by fluorescence-activated cell sorting, demonstrated that doses of between, less than 50, and less than 500 viable cysts were required to produce infection in beavers. Scanning electron microscopy of beaver small intestine revealed that attachment of G. lamblia trophozoites produced lesions in the microvillous border. Inoculation of muskrats with G. lamblia cysts produced infections when the dose of cysts was equal to or greater than 1.25 x 10(5). The inoculation of beavers with Giardia ondatrae or Giardia muris cysts did not produce any infection; however, the administration to muskrats of Giardia cysts of beaver origin resulted in the infection of 62% of the animals (n = 8), with a prepatent period of 5 days. Our results demonstrated that beavers and muskrats could be infected with Giardia cysts derived from humans, but only by using large numbers of cysts.(ABSTRACT TRUNCATED AT 250 WORDS)     

森林鼠类对秦岭南坡3种壳斗科植物种子扩散的影响

种子作为森林鼠类的主要食物来源,它们的扩散和更新很大程度上依赖于鼠类的传播。在鼠类扩散种子的过程中,种子特征和食物相对丰富度是影响鼠类对种子进行何种选择策略的重要因素。2011—2012年的8—12月,采用塑料片标记法在秦岭南坡的佛坪国家级自然保护区内调查了森林鼠类对同域分布的3种壳斗科植物(锐齿槲栎Quercus aliena var.acuteserrata、栓皮栎Q.variabilis和短柄枹栎Q.serrata var.brevipetiolata)种子的扩散差异。结果表明:(1)鼠类倾向于贮藏营养价值较大的栓皮栎种子,并且其贮藏距离也最远(2011:1.52 m,2012:4.03 m),3种种子在食物相对丰富度较低年份被贮藏的距离均较远。(2)在食物相对丰富度较高的年份(2011),种子的消耗速率较慢,在种子释放10 d后种子释放点仍有67.33%的种子,贮藏量较高,至实验结束仍有29.67%的种子被贮藏。在食物相对丰富度较低的年份(2012),种子消耗速率较快,在种子释放后10 d内所有种子均被取食或搬离种子释放点,贮藏量较低,至实验结束仅有3.83%的种子仍被贮藏。(3)虽然栓皮栎种子的贮藏量最大,被贮藏后的存留量也最大,但其在实验地的分布却较小,说明种子扩散仅是植物分布与存活的第一步。以上结果表明,鼠类倾向于贮藏营养价值高的种子。在食物相对丰富度较高的年份会更多的贮藏种子,但种子被贮藏的距离较近,在食物相对丰富度较低的年份会更多的取食种子。     

Thermoregulatory patterns of two sympatric rodents: Otomys unisulcatus and Parotomys brantsii

1. The adaptations to an arid environment in two closely related rodent species were investigated. 2. The rate of oxygen consumption (VO2), body temperature (Tb), evaporative water loss and minimal conductance in Otomys unisulcatus and Parotomys brantsii were determined under controlled conditions at ambient temperatures (Ta), ranging from 11-31 C. 3. Physiological features atypical of desert-adapted rodents include a basal metabolic rate higher than predicted by body mass, the low "lower critical temperature" and symptoms of heat stress at 31 degrees C. 4. The low Tb and wide thermoneutral zone recorded for both species are characteristic of desert rodent species. 5. These species' physiological abilities reflect their mesic phylogeny and we suggest that behaviour must play an important role in their survival in semi-arid areas.     

Diel and seasonal habitat and food segregation of three sympatric Coregonus lavaretus forms in a subarctic lake

Habitat use of three sympatric whitefish Coregonus lavaretus forms was determined using hydroacoustics, pelagic trawling and epibenthic gillnetting in the subarctic Lake Muddusjärvi during the day and night in June, August and September. Whitefish constituted 97% of the numerical catches and whitefish with high number of gill rakers (DR) were the most abundant whitefish form. Forms with low numbers of gill rakers used only epibenthic habitats during both the day and night in all study periods: large whitefish with low numbers of gill rakers (LSR) dwelled mainly at depths 0–10 m, whereas small whitefish with low numbers of gill rakers (SSR) used deeper (>10 m) habitats. LSR and SSR whitefish consumed mainly benthic macroinvertebrates during all study occasions. The planktivorous DR whitefish used both epibenthic and pelagic habitats, but vertical habitat selection varied both over time of day and season. In June, when light intensity was continuously high, DR whitefish did not perform diel vertical migrations. In August and September, when dark nights were distinguishable, DR whitefish ascended from the bottom to the pelagic at dusk to feed on zooplankton, and descended at dawn. DR whitefish used pelagic habitats only at the lowest light intensities during the night, which was probably related to the high predation risk from brown trout Salmo trutta .     

Introduction of alien species and microevolution: The European beaver,raccoon dog,and American mink

Nine skull samples of the beaver Castor fiber, six samples of the raccoon dog Nyctereutes procyonoides, and 6 samples of the American mink Neovison vison were studied using phenetic and craniometric methods. Analysis of the phenofund structure suggests that in all of the studied species the emergence of novel character variations does not lead to their fixation with a significant frequency. Considerable morphological variability emerges in the contact zone of different autochtonous populations, of wild and breeding forms, as well as in geographically and reproductively isolated small groups of individuals. Morphological differences of introduced animals fit into the conception of species polymorphism and are smoothed over when separate colonies merge into metapopulations, which does not lead to the emergence of novel stable taxa.     

Arboreal gaits in three sympatric rodents Apodemus agrarius,Apodemus flavicollis (Rodentia,Muridae) and Myodes glareolus (Rodentia,Cricetidae)

Vertical stratification of the arboreal habitat allows the coexistence of several species in a given area, because the complex arboreal strata can be used in different ways by arboreal and scansorial mammals. The present report experimentally investigated the gait metrics on different arboreal substrates, of three sympatric rodents living in a deciduous forest in Poznań, Poland. Arboreal locomotion was compared between the burrowing striped field mouse, Apodemus agrarius, the scansorial bank vole, Myodes glareolus, and the more arboreal yellow-necked mouse, Apodemus flavicollis. We filmed two wild-caught individuals from each species walking on four different substrate diameters (2 mm, 5 mm, 10 mm, 25 mm) and three different inclinations (45° descending, horizontal, 45° ascending) at 240 fps and collected a set of gait parameters from a total of 273 complete cycles. Our results did not demonstrate clear relationships between arboreal locomotion and the ecology of the three species. Only A. flavicollis exhibited locomotor features partly associated with arboreal competence, including lower velocity and diagonality on narrow substrates and asymmetrical gaits on wider ones. On the other hand, the two Apodemus species, despite their different ecologies, shared a few locomotor similarities, such as velocity regulation primarily by stride frequency, and similar effects of substrate size and inclination on diagonality, duty factor, and duty factor index indicating the possibility of a phylogenetic signal. Because the selected gait parameters provided limited insight into the ability of small mammals to move competently through an arboreal habitat, these findings indicate that the relationship between behaviour and ecology is complex.     

Theoretical habitat templets, species traits, and species richness: aquatic insects in the Upper Rhône River and its floodplain

• 1 For five orders of Insecta (Plecoptera, Ephemeroptera, Odonata, Trichoptera, and Coleoptera) in two sites of the Upper Rhône River (France), the following are examined: (i) relationships among nineteen species traits; (ii) habitat utilization of species; (iii) the relationship between species traits and habitat utilization; and (iv) trends of species traits and species richness in a templet of spatial-temporal habitat variability.
• 2 The species traits having the highest correlations correspond to reproduction, life cycle, nutritional, and morphological features. Species trait characteristics of Coleoptera are distinctly contrasted with those of Plecoptera and Ephemeroptera; Odonata and Trichoptera are intermediate to these orders.
• 3 The distribution of species in fourteen habitat types of the Upper Rhône River floodplain demonstrates a transverse gradient from the main channel to the oxbow lakes and the temporary water habitats, and a vertical gradient from interstitial to superficial habitats.
• 4 Despite a significant relationship between species traits and habitat utilization, superposition between species traits and habitat utilization is limited. At the order level, species form usually one (Ephemeroptera, Trichoptera, Odonata) or several (Coleoptera) groups of relatively homogeneous species traits; however, the species of each of these groups utilize rather different habitat types.
• 5 Only for some life history traits, e.g. the minimum age of reproduction or the number of reproductive cycles per year, do the trends observed in the framework of spatial—temporal variability of habitat types agree with the predictions from the river habitat templet. This mismatch mainly results from the unique phylogenetic history of the Coleoptera compared with that of the other four orders.
• 6 Species richness peaks at an intermediate level of temporal variability; however, it does not gradually increase with increasing spatial variability, nor increase from low to intermediate temporal variability.

     

Theoretical habitat templets, species traits, and species richness: aquatic Coleoptera in the Upper Rhône River and its floodplain

• 1 To test predictions of the river habitat templet and the patch dynamics concept, trends in species traits and species richness of aquatic beetles were related to the spatial-temporal variability of eighteen habitat types in the alluvial floodplain of the French Upper Rhône River. One hundred and twenty species of beetles were used in this analysis.
• 2 The basic information was obtained either from the literature (for most of the species traits) or from observations made at approximately 500 sampling sites in the Brégnier-Cordon and Jons sections over the past 19 years (for habitat utilization). This information was structured by a fuzzy coding technique and examined by ordination analyses.
• 3 Analyses of the relationships among nineteen species traits revealed a clear distinction according to traits such as body form (for adults), functional feeding type and food (adults and larvae), attachment to the substrate and dissemination potential (adults and larvae), and patterns of aquatic and/or terrestrial life of adults and larvae. Species traits such as number of descendants per reproductive cycle, and number of reproductive cycles per year or per individual showed less contrast, because these traits are rather homogeneous in aquatic beetles.
• 4 Analyses of the habitat utilization by the aquatic beetles revealed a vertical gradient that separates interstitial from superficial habitats, and a transverse gradient for the superficial habitats, which extends from the main channel towards permanent oxbow lakes and temporary waters.
• 5 The significant relationship betweeen species traits and habitat utilization demonstrates that most beetle species use a particular set of habitat types with a particular set of species trait modalities.
• 6 Species traits of aquatic beetles are homogeneous but evidently very successful and are adapted to many potential conditions of spatial–temporal variability. Because of this homogeneity, observations on aquatic beetles do not support trends of traits in the framework of spatial–temporal variability predicted from the river habitat templet.
• 7 The observed species richness of aquatic beetles is low in habitat types with a low spatial–temporal variability, increases as spatial variability increases, and tends to be highest at intermediate temporal variability. This pattern matches predictions of the patch dynamics concept.

     

海河流域河流生境功能识别及区域差异

城市群快速发展严重影响着区域水生态系统的完整性,大尺度流域的河流生境功能辨识和分析尚缺乏系统研究。以海河流域为例,根据河段蜿蜒度、河段比降、断流风险、盐度等4个指标,构建了河流生境功能的分类指标体系。通过多源空间数据和人工判读,划分了6254条河段,在此基础上将河流生境类型划分为15类。通过52个监测样点的鱼类调查数据,分析了不同河流生境的水生生物特征差异,揭示了鱼类多样性高的区域多位于河流比降大、断流风险低的区域,而河流蜿蜒度对于鱼类多样性影响较小。根据京津冀13个地级市的河流生境差异,提出京津冀城市群的生态安全构建需要充分考虑河流生境的空间异质性,并制定融合城市发展目标、水资源利用需求和河流生境功能的综合指标体系。     

Theoretical habitat templets, species traits, and species richness: aquatic oligochaetes in the Upper Rhône River and its floodplain

• 1 This paper summarizes twenty years of ecological research on aquatic oligochaetes of the Upper Rhône River and its alluvial floodplain (France). Species traits of fifty species of the ninety taxa recorded from two areas Gons and Brégnier-Cordon) were used to examine the relationships among species traits, habitat utilization of these species, whether a relationship exists between species traits and habitat utilization, and the applicability of predictions from the river habitat templet and the patch dynamics concept in the framework of spatial and temporal habitat variability. We used fourteen habitat types and sixteen species traits in this analysis.
• 2 When examined by correspondence analysis, species traits separate the Naididae (with a higher potential for reproduction, small size, high mobility, and opportunistic diet) from all other families.
• 3 Habitat utilization by oligochaetes demonstrates two gradients: a vertical gradient that arranges species by their affinity for interstitial habitats (stygophily) and a transversal gradient that arranges them by their affinity for main channel habitats (rheophily).
• 4 No significant relationship was found between species traits and habitat utilization in a co-inertia analysis.
• 5 Trends observed for species traits within the framework of spatial-temporal habitat variability show only minor agreement with predictions of the river habitat templet.
• 6 Species richness is generally higher in superficial and interstitial habitats that are permanently connected with the main channel, and peaks in the superficial parapotamons (backwaters that are permanently connected with the main channel) characterized by intermediate levels of spatial as well as temporal variability; this pattern only partially fits with predictions of the patch dynamics concept.

     

Theoretical habitat templets, species traits, and species richness: aquatic macrophytes in the Upper Rhône River and its floodplain

• 1 The objective of this study, which is based on forty-two species of hydrophytes and helophytes, is to investigate: (i) relationships among species traits; (ii) habitat utilization by species; (iii) the relationship between species traits and habitat utilization; (iv) trends in species traits in the framework of spatial–temporal habitat variability, and if trends match predictions from the river habitat templet; and (v) trends in species richness in the framework of spatial–temporal habitat variability, and if trends match predictions of the patch dynamics concept.
• 2 Two data sets were used for this analysis: species traits (mainly reproductive and morphological characteristics) were documented from the literature; and species distribution across eight habitat types was from field surveys conducted in the floodplain of the Upper Rhone River, France. This information was structured by a fuzzy coding technique and analysed by ordination methods.
• 3 Several species traits, which are related to disturbances and reflect resistance (e.g. attachment to soil or substrate) or resilience (e.g. potential for regeneration of an individual), are closely related for aquatic macrophytes.
• 4 Habitat utilization by aquatic macrophytes separates the habitat types along a gradient of connectivity with the main channel, which corresponds to a gradient in flood disturbance frequency and the permanence of the different water-bodies.
• 5 The relationship between species traits and habitat utilization is highly significant, indicating that a particular set of habitat types is used by taxa with a particular set of species trait modalities.
• 6 Observations in one habitat templet (in which scaling of the templet is primarily based on water level fluctuations for the temporal variability axis and on substrate characteristics for the spatial variability axis) generally do not support predictions on trends in species traits but do support predictions on trends in species richness.
• 7 Observations in an alternative habitat templet (in which scaling of the templet is based on frequency of flood scouring for the temporal variability axis and on heterogeneity of the substrate for the spatial variability axis) support theoretical predictions on trends for about half of the species traits for which predictions were available. However, trends in species richness in this alternative habitat templet are only partly in agreement with predictions.

     

Foraging behaviour and habitat partitioning of two sympatric cormorants in Patagonia, Argentina

Radiotelemetry was used to assess the distribution and diving behaviour of Rock Shags Phalacrocorax magellanicus and Red-legged Cormorants Phalacrocorax gaimardi breeding in sympatry, and Rock Shags breeding in isolation. When breeding in sympatry there was little overlap in the foraging locations of the two species, with the highest densities of each species separated by 10 km. Red-legged Cormorants fed significantly closer to the breeding colony than did Rock Shags and undertook shorter foraging trips, making almost twice as many foraging trips per day as Rock Shags. Rock Shags breeding in isolation had a shorter foraging range than the birds breeding in sympatry with Red-legged Cormorants and foraging trip duration was significantly shorter. However, the number of feeding trips per day was similar between areas of sympatry and allopatry. Differences in the foraging ecology of Rock Shags in areas of sympatry and allopatry may be due to interspecific competition, which forces niche differentiation. The distance between foraging sites, the speed of movement of the prey, a species tendency to move into prey-depleted areas and the length of the breeding season (during which the birds are constrained to be in the same area) may play critical roles in determining the extent to which differential area use by competitors is a strategy that benefits both parties.