Distance and backhaul in commodity transport modeling

Background, aims and scope  

The goal of this work is to provide methodological information for modeling distance and backhaul for commodity transport in a life cycle inventory (LCI). The scope includes a review of modeling parameters accounted for in transport unit process models and accounted for in unit process models using transported materials. Assumptions related to backhaul (or return trip) and transport distance are characterized and evaluated. A case study explores the contribution of transport and the bearing of assumptions on the life cycle of select US-produced metals.     

Semantic role labeling for protein transport predicates

Background  

Automatic semantic role labeling (SRL) is a natural language processing (NLP) technique that maps sentences to semantic representations. This technique has been widely studied in the recent years, but mostly with data in newswire domains. Here, we report on a SRL model for identifying the semantic roles of biomedical predicates describing protein transport in GeneRIFs – manually curated sentences focusing on gene functions. To avoid the computational cost of syntactic parsing, and because the boundaries of our protein transport roles often did not match up with syntactic phrase boundaries, we approached this problem with a word-chunking paradigm and trained support vector machine classifiers to classify words as being at the beginning, inside or outside of a protein transport role.     

Life cycle assessment of switchgrass-derived ethanol as transport fuel

Background, aim, and scope  

The increasing gasoline price, the depletion of fossil resources, and the negative environmental consequences of driving with petroleum fuels have driven the development of alternative transport fuels. Bioethanol, which is converted from cellulosic feedstocks, has attracted increasing attention as one such alternative. This study assesses the environmental impact of using ethanol from switchgrass as transport fuel and compares the results with the ones of gasoline to analyze the potential of developing switchgrass ethanol as an environmentally sustainable transport fuel.     

Expression of epithelial calcium transport system in rat cochlea and vestibular labyrinth

Background  

The low luminal Ca²⁺ concentration of mammalian endolymph in the inner ear is required for normal hearing and balance. We recently reported the expression of mRNA for a Ca²⁺-absorptive transport system in primary cultures of semicircular canal duct (SCCD) epithelium.     

The sustainability of communicative packaging concepts in the food supply chain. A case study: part 2. Life cycle costing and sustainability assessment

Purpose  

This paper is the second part of a two-paper series dealing with the sustainability evaluation of a new communicative packaging concept. The communicative packaging concept includes a device that allows changing the expiry date of the product as function of temperature during transport and storage: a flexible best-before-date (FBBD). Such device was analysed in a consumer unit consisting of a nanoclay-based polylactic acid tray filled with pork chops.     

An evolved xylose transporter from Zymomonas mobilis enhances sugar transport in Escherichia coli

Background  

Xylose is a second most abundant sugar component of lignocellulose besides glucose. Efficient fermentation of xylose is important for the economics of biomass-based biorefineries. However, sugar mixtures are sequentially consumed in xylose co-fermentation with glucose due to carbon catabolite repression (CCR) in microorganisms. As xylose transmembrance transport is one of the steps repressed by CCR, it is therefore of interest to develop a transporter that is less sensitive to the glucose inhibition or CCR.     

Arsenic transport by zebrafish aquaglyceroporins

Background  

Arsenic is one of the most ubiquitous toxins and endangers the health of tens of millions of humans worldwide. It is a mainly a water-borne contaminant. Inorganic trivalent arsenic (As^III) is one of the major species that exists environmentally. The transport of As^III has been studied in microbes, plants and mammals. Members of the aquaglyceroporin family have been shown to actively conduct As^III and its organic metabolite, monomethylarsenite (MAs^III). However, the transport of As^III and MAs^III in in any fish species has not been characterized.     

Circulating β-endorphin,adrenocorticotrophic hormone and cortisol levels of stallions before and after short road transport: stress effect of different distances

Background  

Since transport evokes physiological adjustments that include endocrine responses, the objective of this study was to examine the responses of circulating β-endorphin, adrenocorticotrophic hormone (ACTH) and cortisol levels to transport stress in stallions.     

Conserved charged amino acid residues in the extracellular region of sodium/iodide symporter are critical for iodide transport activity

Background  

Sodium/iodide symporter (NIS) mediates the active transport and accumulation of iodide from the blood into the thyroid gland. His-226 located in the extracellular region of NIS has been demonstrated to be critical for iodide transport in our previous study. The conserved charged amino acid residues in the extracellular region of NIS were therefore characterized in this study.     

Identification of biomolecule mass transport and binding rate parameters in living cells by inverse modeling

Background  

Quantification of in-vivo biomolecule mass transport and reaction rate parameters from experimental data obtained by Fluorescence Recovery after Photobleaching (FRAP) is becoming more important.     

Function of nuclear transport factor 2 and Ran in the 20E signal transduction pathway in the cotton bollworm, Helicoverpa armigera

Background  

Nuclear transport factor 2 and small GTPase Ran participate in the nucleo-cytoplasm transport of macromolecules, but their function in the 20-hydroxyecdysone (20E) signal transduction pathway are not well known.     

A finite element model for protein transport in vivo

Background  

Biological mass transport processes determine the behavior and function of cells, regulate interactions between synthetic agents and recipient targets, and are key elements in the design and use of biosensors. Accurately predicting the outcomes of such processes is crucial to both enhancing our understanding of how these systems function, enabling the design of effective strategies to control their function, and verifying that engineered solutions perform according to plan.     

Microtubule self-organisation by reaction-diffusion processes causes collective transport and organisation of cellular particles

Background  

The transport of intra-cellular particles by microtubules is a major biological function. Under appropriate in vitro conditions, microtubule preparations behave as a 'complex' system and show 'emergent' phenomena. In particular, they form dissipative structures that self-organise over macroscopic distances by a combination of reaction and diffusion.     

Shaping fission yeast cells by rerouting actin-based transport on microtubules

Kinesins and myosins transport cargos to specific locations along microtubules and actin filaments, respectively. The relative contribution of the two transport systems for cell polarization varies extensively in different cell types, with some cells relying exclusively on actin-based transport while others mainly use microtubules. Using fission yeast, we asked whether one transport system can substitute for the other. In this organism, microtubules and actin cables both contribute to polarized growth by transporting cargos to cell poles, but with distinct roles: microtubules transport landmarks to label cell poles for growth and actin assembly but do not directly contribute to the growth process [1]. Actin cables serve as tracks for myosin V delivery of growth vesicles to cell poles [ [2] , [3] and [4] ]. We engineered a chimera between the motor domain of the kinesin 7 Tea2 and the globular tail of the myosin V Myo52, which we show transports Ypt3, a myosin cargo receptor, to cell poles along microtubules. Remarkably, this chimera restores polarized growth and viability to cells lacking actin cables. It also bypasses the normal microtubule-dependent marking of cell poles for polarized growth, but not for other functions. Thus, a synthetic motor protein successfully redirects cargos along a distinct cytoskeletal route.

Video Abstract

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15.

Sialic acid transport and catabolism are cooperatively regulated by SiaR and CRP in nontypeable <Emphasis Type="Italic">Haemophilus influenzae</Emphasis>     

Jason W Johnston  Haider Shamsulddin  Anne-Frances Miller  Michael A Apicella 《BMC microbiology》2010,10(1):240

     

16.

Transport lattice models of heat transport in skin with spatially heterogeneous,temperature-dependent perfusion     

Gowrishankar TR  Stewart DA  Martin GT  Weaver JC 《Biomedical engineering online》2004,3(1):42

Background  

Investigation of bioheat transfer problems requires the evaluation of temporal and spatial distributions of temperature. This class of problems has been traditionally addressed using the Pennes bioheat equation. Transport of heat by conduction, and by temperature-dependent, spatially heterogeneous blood perfusion is modeled here using a transport lattice approach.     

17.

Comparative environmental performance of semi-trailer load boxes for grain transport made of different materials     

Cláudia Echevenguá Teixeira  Luciane Sartori  Alexandra Rodrigues Finotti 《The International Journal of Life Cycle Assessment》2010,15(2):212-220

Background, aim, and scope  

Semi-trailers with load boxes are the most important mode of grain transport by land in the world. Load boxes can be produced with different materials such as: wood, steel, and synthetic material. They are responsible for effectiveness retention and quality of grains during the transport. Among the main aspects to be considered and valued when selecting materials for load boxes are the final mass of the semi-trailer, loss of grains, and mechanical properties. Environmental performance is another important aspect to be taken into account for developing and selecting new materials in this kind of application. This study presents a comparative environmental evaluation of load boxes built from two different materials (a wood panel and a three-layer synthetic (TLS) panel). Mass balance and life cycle assessment (LCA) were used in this study.     

18.

Dominance induction of fruitlet shedding in Malus × domestica (L. Borkh): molecular changes associated with polar auxin transport     

Valeriano Dal Cin  Riccardo Velasco  Angelo Ramina 《BMC plant biology》2009,9(1):139

     

19.

Anatomical features associated with water transport in imperforate tracheary elements of vessel-bearing angiosperms     

Sano Y  Morris H  Shimada H  Ronse De Craene LP  Jansen S 《Annals of botany》2011,107(6):953-964

Background and Aims

Imperforate tracheary elements (ITEs) in wood of vessel-bearing angiosperms may or may not transport water. Despite the significance of hydraulic transport for defining ITE types, the combination of cell structure with water transport visualization in planta has received little attention. This study provides a quantitative analysis of structural features associated with the conductive vs. non-conductive nature of ITEs.

Methods

Visualization of water transport was studied in 15 angiosperm species by dye injection and cryo-scanning electron microscopy. Structural features of ITEs were examined using light and electron microscopy.

Key Results

ITEs connected to each other by pit pairs with complete pit membranes contributed to water transport, while cells showing pit membranes with perforations up to 2 µm were hydraulically not functional. A close relationship was found between pit diameter and pit density, with both characters significantly higher in conductive than in non-conductive cells. In species with both conductive and non-conductive ITEs, a larger diameter was characteristic of the conductive cells. Water transport showed no apparent relationship with the length of ITEs and vessel grouping.

Conclusions

The structure and density of pits between ITEs represent the main anatomical characters determining water transport. The pit membrane structure of ITEs provides a reliable, but practically challenging, criterion to determine their conductive status. It is suggested that the term tracheids should strictly be used for conductive ITEs, while fibre-tracheids and libriform fibres are non-conductive.     

20.

Electric passenger car transport and passenger car life cycle inventories in ecoinvent version 3     

Andrea Del Duce  Marcel Gauch  Hans-Jörg Althaus 《The International Journal of Life Cycle Assessment》2016,21(9):1314-1326

Purpose

Due to the large environmental challenges posed by the transport sector, reliable and state-of-the art data for its life cycle assessment is essential for enabling a successful transition towards more sustainable systems. In this paper, the new electric passenger car transport and vehicle datasets, which have been developed for ecoinvent version 3, are presented.

Methods

The new datasets have been developed with a strong modular approach, defining a hierarchy of datasets corresponding to various technical components in the vehicle. A vehicle is therefore modelled by linking together the various component datasets. Also, parameters and mathematical formulas have been introduced in order to define the amount of exchanges in the datasets through common transport and vehicle characteristics. This supports users in the choice of the amount of exchanges and enhances the transparency of the dataset.

Results

The new transport dataset describes the transport over 1 km with a battery electric passenger car taking into account the vehicle production and end of life, the energy consumption due to the use phase, non-exhaust emissions, maintenance and road infrastructure. The dataset has been developed and is suitable for a compact class vehicle.

Conclusions

A new electric passenger car transport dataset has been developed for version 3 of the ecoinvent database which exploits modularisation and parameters with the aim of facilitating users in adapting the data to their specific needs. Apart from the direct use of the transport dataset for background data, the various datasets for the different components can also be used as building blocks for virtual vehicles.

     

Transport lattice models of heat transport in skin with spatially heterogeneous,temperature-dependent perfusion

Background  

Investigation of bioheat transfer problems requires the evaluation of temporal and spatial distributions of temperature. This class of problems has been traditionally addressed using the Pennes bioheat equation. Transport of heat by conduction, and by temperature-dependent, spatially heterogeneous blood perfusion is modeled here using a transport lattice approach.     

Comparative environmental performance of semi-trailer load boxes for grain transport made of different materials

Background, aim, and scope  

Semi-trailers with load boxes are the most important mode of grain transport by land in the world. Load boxes can be produced with different materials such as: wood, steel, and synthetic material. They are responsible for effectiveness retention and quality of grains during the transport. Among the main aspects to be considered and valued when selecting materials for load boxes are the final mass of the semi-trailer, loss of grains, and mechanical properties. Environmental performance is another important aspect to be taken into account for developing and selecting new materials in this kind of application. This study presents a comparative environmental evaluation of load boxes built from two different materials (a wood panel and a three-layer synthetic (TLS) panel). Mass balance and life cycle assessment (LCA) were used in this study.     

Anatomical features associated with water transport in imperforate tracheary elements of vessel-bearing angiosperms

Background and Aims

Imperforate tracheary elements (ITEs) in wood of vessel-bearing angiosperms may or may not transport water. Despite the significance of hydraulic transport for defining ITE types, the combination of cell structure with water transport visualization in planta has received little attention. This study provides a quantitative analysis of structural features associated with the conductive vs. non-conductive nature of ITEs.

Methods

Visualization of water transport was studied in 15 angiosperm species by dye injection and cryo-scanning electron microscopy. Structural features of ITEs were examined using light and electron microscopy.

Key Results

ITEs connected to each other by pit pairs with complete pit membranes contributed to water transport, while cells showing pit membranes with perforations up to 2 µm were hydraulically not functional. A close relationship was found between pit diameter and pit density, with both characters significantly higher in conductive than in non-conductive cells. In species with both conductive and non-conductive ITEs, a larger diameter was characteristic of the conductive cells. Water transport showed no apparent relationship with the length of ITEs and vessel grouping.

Conclusions

The structure and density of pits between ITEs represent the main anatomical characters determining water transport. The pit membrane structure of ITEs provides a reliable, but practically challenging, criterion to determine their conductive status. It is suggested that the term tracheids should strictly be used for conductive ITEs, while fibre-tracheids and libriform fibres are non-conductive.     

Electric passenger car transport and passenger car life cycle inventories in ecoinvent version 3

Purpose

Due to the large environmental challenges posed by the transport sector, reliable and state-of-the art data for its life cycle assessment is essential for enabling a successful transition towards more sustainable systems. In this paper, the new electric passenger car transport and vehicle datasets, which have been developed for ecoinvent version 3, are presented.

Methods

The new datasets have been developed with a strong modular approach, defining a hierarchy of datasets corresponding to various technical components in the vehicle. A vehicle is therefore modelled by linking together the various component datasets. Also, parameters and mathematical formulas have been introduced in order to define the amount of exchanges in the datasets through common transport and vehicle characteristics. This supports users in the choice of the amount of exchanges and enhances the transparency of the dataset.

Results

The new transport dataset describes the transport over 1 km with a battery electric passenger car taking into account the vehicle production and end of life, the energy consumption due to the use phase, non-exhaust emissions, maintenance and road infrastructure. The dataset has been developed and is suitable for a compact class vehicle.

Conclusions

A new electric passenger car transport dataset has been developed for version 3 of the ecoinvent database which exploits modularisation and parameters with the aim of facilitating users in adapting the data to their specific needs. Apart from the direct use of the transport dataset for background data, the various datasets for the different components can also be used as building blocks for virtual vehicles.