A comparison of camera trap and permanent recording video camera efficiency in wildlife underpasses

In the current context of biodiversity loss through habitat fragmentation, the effectiveness of wildlife crossings, installed at great expense as compensatory measures, is of vital importance for ecological and socio‐economic actors. The evaluation of these structures is directly impacted by the efficiency of monitoring tools (camera traps…), which are used to assess the effectiveness of these crossings by observing the animals that use them. The aim of this study was to quantify the efficiency of camera traps in a wildlife crossing evaluation. Six permanent recording video systems sharing the same field of view as six Reconyx HC600 camera traps installed in three wildlife underpasses were used to assess the exact proportion of missed events (event being the presence of an animal within the field of view), and the error rate concerning underpass crossing behavior (defined as either Entry or Refusal). A sequence of photographs was triggered by either animals (true trigger) or artefacts (false trigger). We quantified the number of false triggers that had actually been caused by animals that were not visible on the images (“false” false triggers). Camera traps failed to record 43.6% of small mammal events (voles, mice, shrews, etc.) and 17% of medium‐sized mammal events. The type of crossing behavior (Entry or Refusal) was incorrectly assessed in 40.1% of events, with a higher error rate for entries than for refusals. Among the 3.8% of false triggers, 85% of them were “false” false triggers. This study indicates a global underestimation of the effectiveness of wildlife crossings for small mammals. Means to improve the efficiency are discussed.     

Using time-lapse digital video recording for a nesting study of birds of prey

Remote photography using various photo, movie or video devices has been employed in numerous studies in wildlife research during the last 50 years. Given the rapid advances in digital technologies, digital video and photo techniques are becoming more common in use, and publications that introduce a new method or equipment for video surveillance in wildlife research (and in ornithological studies particularly) are appearing almost every year. However, still no special guide to the great variety of equipment and methods is available, and the choice and use of suitable gear for scientific purposes may be difficult for non-specialists. In this paper, we review the most common surveillance techniques used in today’s nest studies, as well as the most essential properties of image recording equipment. We also describe the digital video recording technique, which we used for observations of raptor nests, and summarise our experience of its operation. As an example of the obtained data, we present the timing of prey deliveries of goshawks and common buzzards.     

Construction of a thermotaxis chamber providing spatial or temporal thermal gradients monitored by an infrared video camera system.

A thermotaxis chamber was constructed to quantitatively study thermotaxis in eukaryotic amoeboid cells. The apparatus provided either spatial or temporal temperature gradients in an observation chamber set in an inverted microscope. With an infrared video camera system, spatial thermal gradients were monitored directly and the temperature at the actual location of the cells could be estimated accurately. This enabled a precise determination of the strength of thermal stimuli. With this apparatus, we were able to simultaneously measure temperature and observe cellular behavior directly. This feature permits quantitative studies on stimulus-response relationships. The utility of the apparatus was demonstrated by thermotaxis assay under a spatial thermal gradient in polymorphonuclear leukocytes. Since this apparatus can also provide temporal thermal gradients, it may have several applications in studies of temperature-dependent phenomena in cell biology.     

Seven-channel digital telemetry system for monitoring and direct computer capturing of biological data

A seven-channel telemetry system for collection and display of biological data is presented. The system can amplify bioelectrical signals in the range of 2 μV to 200 mV and has a bandwidth of 0.1–80 Hz. After multiplexing, the signals are digitized with a resolution of 8 bits. The data are frequency modulated directly on a VHF transmitter. After receiving the data on a VHF receiver, they are routed directly to the RS232 input connector on the PC. Thereby the advantage of direct communication between the transmitter and the PC can be utilized. Expensive analog equipment is avoided and display of the signals on the PC screen as well as signal analysis can be performed. The system has been tested and was found to be stable and highly reliable.     

A microcomputer interface for a digital audio processor-based data recording system.

An inexpensive interface is described that performs direct transfer of digitized data from the digital audio processor and video cassette recorder based data acquisition system designed by Bezanilla (1985, Biophys. J., 47:437-441) to an IBM PC/XT microcomputer. The FORTRAN callable software that drives this interface is capable of controlling the video cassette recorder and starting data collection immediately after recognition of a segment of previously collected data. This permits piecewise analysis of long intervals of data that would otherwise exceed the memory capability of the microcomputer.     

Noninvasive recording of the His-Purkinje system electrical activity by a digital system design

The atrioventricular conduction pathways which are composed of the atrioventricular node and the His-Purkinje system (HPS) form a specialized conduction system in the heart that participates in the control of the ventricular conduction. His bundle recordings require cardiac catheterization in the diagnosis of abnormalities within the HPS. These recordings have limitations that include discomfort, a slight morbidity risk, and limited recording area within the heart. This report outlines a non-invasive technique that utilizes high gain, wide band filtering and coherent signals averaging to extract the electrical activity of the HPS at the body surface. We have designed a portable instrument which enables: (i) a high gain, very low noise, optically isolated differential amplifier; (ii) an online digital QRS detector based on the principle of contour limiting which detects the desired QRS complexes and generates a very accurate trigger for the coherent signal averaging; (iii) a digital memory averager. This instrument can be used as an automatic clinical tool or as a data acquisition and preprocessing system for high frequency ECG and many other low level electrophysiological signals.     

A high capacity data recording device based on a digital audio processor and a video cassette recorder.

A modified digital audio processor, a video cassette recorder, and some simple added circuitry are assembled into a recording device of high capacity. The unit converts two analog channels into digital form at 44-kHz sampling rate and stores the information in digital form in a common video cassette. Bandwidth of each channel is from direct current to approximately 20 kHz and the dynamic range is close to 90 dB. The total storage capacity in a 3-h video cassette is 2 Gbytes. The information can be retrieved in analog or digital form.     

Applications of video mixing and digital overlay to neuroethology

Neuroethological experiments often require video images of animal behavior and recordings of physiological data to be acquired simultaneously, synchronized with each other, stored, and analyzed together. The use of inexpensive multimedia computers offers new possibilities for mixing video images, analog voltages, and computer data, storing these combined signals to videotape, and extracting quantitative data for analysis. In this paper, we summarize methods for mixing images from multiple video cameras and a Macintosh computer display to facilitate manipulation of data generated during our neurophysiological and behavioral research. These technologies enhance accuracy, speed, and flexibility during experiments, and facilitate selecting and extracting quantitative data from the videotape for further analysis. Three applications are presented: (A) we used an analog video mixer to synchronize neurophysiological recordings with ongoing behaviors of freely moving rats; (B) we used a chroma keyed digital overlay to generate positional data for the rat's face during drinking behavior; and (C) we combined a computer model of a rat's head and whiskers with videos of exploratory behaviors to better track and quantify movements in three dimensions. Although the applications described here are specific to our neuroethological work, these methods will be useful to anyone wishing to combine the signals from multiple video sources into a single image or to extract series of positional or movement data from video frames without frame grabbing.     

Systematic accuracy and precision analysis of video motion capturing systems--exemplified on the Vicon-460 system

With rising demand on highly accurate acquisition of small motion the use of video-based motion capturing becomes more and more popular. However, the performance of these systems strongly depends on a variety of influencing factors. A method was developed in order to systematically assess accuracy and precision of motion capturing systems with regard to influential system parameters. A calibration and measurement robot was designed to perform a repeatable dynamic calibration and to determine the resultant system accuracy and precision in a control volume investigating small motion magnitudes (180x180x150mm(3)). The procedure was exemplified on the Vicon-460 system. Following parameters were analyzed: Camera setup, calibration volume, marker size and lens filter application. Equipped with four cameras the Vicon-460 system provided an overall accuracy of 63+/-5mum and overall precision (noise level) of 15mum for the most favorable parameter setting. Arbitrary changes in camera arrangement revealed variations in mean accuracy between 76 and 129mum. The noise level normal to the cameras' projection plane was found higher compared to the other coordinate directions. Measurements including regions unaffected by the dynamic calibration reflected considerably lower accuracy (221+/-79mum). Lager marker diameters led to higher accuracy and precision. Accuracy dropped significantly when using an optical lens filter. This study revealed significant influence of the system environment on the performance of video-based motion capturing systems. With careful configuration, optical motion capturing provides a powerful measuring opportunity for the majority of biomechanical applications.     

Comparison of efficiency of direct observations by scuba diver and indirect observations via video camera for measuring reef-fish behaviour

The present study investigates how the humbug damselfish Dascyllus aruanus, subject of a large number of ecological, evolutionary and behavioural studies, responds to the presence of human observers (effect of scuba diver presence-absence) and how the method of data collection (directly by a scuba diver v. indirectly via video camera) may affect the quality of behavioural data. Scuba diver presence had only subtle effects on fish behaviour. The efficiency of the method of scoring fish behaviour depended on the behaviour under consideration: those behaviours that occur in close proximity to the corals were scored more effectively directly by a scuba diver while those that are performed in a more rapid or repetitive fashion were scored more effectively indirectly via video camera. These results provide a foundation for future behavioural research on D. aruanus and other fishes where scuba divers or video cameras are the prevalent means of data collection.     

基于多传感器的声景大数据在线采集与分析系统研究

声景包含重要的生态信息,具有实时性强、信息密度高的特点,有重要研究价值。现有的声景研究中,音频及相关环境参数采集和分析仍需要大量的人工作业,耗时耗力。基于多传感集成、边缘计算和深度学习技术,建立了一套声景大数据在线采集与分析系统,包括边缘计算节点和中心计算服务器。并通过3个实验站点,进行了近1年的技术验证,实现了声景大数据的自动化在线采集、传输和分析。该系统能适应户外恶劣的自然环境,能根据任务需求持续不断地进行声景大数据在线采集和分析,稳定性好。声学指数可以反映声景变化,但因指数侧重点不同,不同的声学指数之间变化特征差异较大,需要组合使用。通过声纹特征图能直观地识别出不同发声源,对物种的快速识别、声源的分类等具有较强的借鉴意义。系统借助VGGish网络提取的高维声景特征图能很好地识别不同站点和不同时间的声景变化,在不同站点和昼夜上具有较高的区分精度,有快速和直观地反映不同生态系统的类型特征、生态系统动态变化的潜力。丰富声纹特征库、优化声景特征分析神经网络、建设声景长期监测共享网络,有助于扩展系统在物种识别、生物多样性快速分析、生物与环境相互作用机制方面的应用。研究为声景大数据的在线采集...     

A portable system for continuous monitoring of bird nests using digital video recorders

ABSTRACT.   A variety of photographic methods have been described for monitoring nest predation. All have limitations for studying active nests in remote situations, such as size, expense, volume of data recorded, and types of trigger mechanisms. We developed a digital video surveillance system using infrared cameras to monitor predation at bird nests. The main advantage of this system over other video recorders is the small size of the recorder that can run continuously at 29 frames/s for more than 3 days. The recorder's built-in monitor makes it more transportable and allows for easy setup. Digital data is compact, can be reviewed quickly, and requires less physical storage space than videotapes. We recorded nest predation by mammals, birds, and snakes as well as egg and nestling losses not caused by predation. System failure rates were low and the total cost was comparable to ($700 US) video cassette recorders that are often used to monitor nests.     

Low-cost conversion of the Polaroid MD-4 land camera to a digital gel documentation system

A simple, inexpensive design is presented for the rapid conversion of the popular MD-4 Polaroid land camera to a high quality digital gel documentation system. Images of ethidium bromide stained DNA gels captured using the digital system were compared to images captured on Polaroid instant film. Resolution and sensitivity were enhanced using the digital system. In addition to the low cost and superior image quality of the digital system, there is also the added convenience of real-time image viewing through the swivel LCD of the digital camera, wide flexibility of gel sizes, accurate automatic focusing, variable image resolution, and consistent ease of use and quality. Images can be directly imported to a computer by using the USB port on the digital camera, further enhancing the potential of the digital system for documentation, analysis, and archiving. The system is appropriate for use as a start-up gel documentation system and for routine gel analysis.     

Development of a four-dimensional Monte Carlo dose calculation system for real-time tumor-tracking irradiation with a gimbaled X-ray head

PurposeTo develop a four-dimensional (4D) dose calculation system for real-time tumor tracking (RTTT) irradiation by the Vero4DRT.MethodsFirst, a 6-MV photon beam delivered by the Vero4DRT was simulated using EGSnrc. A moving phantom position was directly measured by a laser displacement gauge. The pan and tilt angles, monitor units, and the indexing time indicating the phantom position were also extracted from a log file. Next, phase space data at any angle were created from both the log file and particle data under the dynamic multileaf collimator. Irradiation both with and without RTTT, with the phantom moving, were simulated using several treatment field sizes. Each was compared with the corresponding measurement using films. Finally, dose calculation for each computed tomography dataset of 10 respiratory phases with the X-ray head rotated was performed to simulate the RTTT irradiation (4D plan) for lung, liver, and pancreatic cancer patients. Dose-volume histograms of the 4D plan were compared with those calculated on the single reference respiratory phase without the gimbal rotation [three-dimensional (3D) plan].ResultsDifferences between the simulated and measured doses were less than 3% for RTTT irradiation in most areas, except the high-dose gradient. For clinical cases, the target coverage in 4D plans was almost identical to that of the 3D plans. However, the doses to organs at risk in the 4D plans varied at intermediate- and low-dose levels.ConclusionsOur proposed system has acceptable accuracy for RTTT irradiation in the Vero4DRT and is capable of simulating clinical RTTT plans.     

Development of a digital adaptive control system for PO2 regulation in a membrane oxygenator

Regulation of gas exchange in artificial lungs (oxygenators) during cardiopulmonary bypass is normally achieved by manual control of the gas composition and flow in response to intermittent sampling of the arterial partial pressures of oxygen (P_aO₂) and carbon dioxide (P_aCO₂). Manual control often results in abnormal blood gases which have been implicated in patient morbidity as well as influencing perfusion safety. Fine control of P_aO₂ and P_aCO₂ may be achieved by a combination of an in-line blood gas monitoring system and a membrane type oxygenator which is automatically regulated. The overall dynamics of the oxygenation process and control system components are complex and have nonlinear, multivariable and time-varying characteristics. Consequently, an adaptive control system approach is necessary. The implementation of a digital self-tuning control regime for P_aO₂ is described here. The controller is based on an explicit Linear Quadratic Gaussian (LQG) self-tuning control design which is presented using a polynomial equation approach. The controller performance was investigated in in vitro experiments. The self-tuner performed satisfactority with various sensor/oxygenator combinations for blood flow and temperature load disturbances. In contrast, a nonadaptive (proportional-integral, PI) type of control system was found to be unsuitable.     

Development of a versatile computer integrated control system for bioprocess controls

A general approach is described for the implementation of a networked multi-unit computer integrated control system. The use of data acquisition hardware and graphical programming tools alleviates tedious programming and maintains potency and flexibility. One application of the control system, the control of a mammalian cell perfusion culture based on a key nutrient glucose concentration, was demonstrated. The control system offers customized user interface for all process control parameters and allows the flexibility for continued improvement and implementation of new tailored functions. The temperature, pH, dissolved oxygen and glucose level were accurately controlled. This revised version was published online in June 2006 with corrections to the Cover Date.     

A new digital field data collection system for dendrochronology

A wide variety of information or ‘metadata’ is required when undertaking dendrochronological sampling. Traditionally, researchers record observations and measurements on field notebooks and/or paper recording forms, and use digital cameras and hand-held GPS devices to capture images and record locations. In the lab, field notes are often manually entered into spreadsheets or personal databases, which are then sometimes linked to images and GPS waypoints. This process is both time consuming and prone to human and instrument error. Specialised hardware technology exists to marry these data sources, but costs can be prohibitive for small scale operations (>$2000 USD). Such systems often include proprietary software that is tailored to very specific needs and might require a high level of expertise to use. We report on the successful testing and deployment of a dendrochronological field data collection system utilising affordable off-the-shelf devices ($100–300 USD). The method builds upon established open source software that has been widely used in developing countries for public health projects as well as to assist in disaster recovery operations. It includes customisable forms for digital data entry in the field, and a marrying of accurate GPS location with geotagged photographs (with possible extensions to other measuring devices via Bluetooth) into structured data fields that are easy to learn and operate. Digital data collection is less prone to human error and efficiently captures a range of important metadata. In our experience, the hardware proved field worthy in terms of size, ruggedness, and dependability (e.g., battery life). The system integrates directly with the Tellervo software to both create forms and populate the database, providing end users with the ability to tailor the solution to their particular field data collection needs.