Osmoregulatory Responses of Fungi Inhabiting Standing Litter of the Freshwater Emergent Macrophyte Juncus effusus

Standing litter of emergent macrophytes often forms a major portion of the detrital mass in wetland habitats. Microbial assemblages inhabiting this detritus must adapt physiologically to daily fluctuations in temperature and water availability. We examined the effects of various environmental conditions on the concentrations of osmoregulatory solutes (polyols and trehalose) and the respiratory activities of fungal assemblages inhabiting standing litter of the freshwater emergent macrophyte Juncus effusus. Under field conditions, the concentrations of osmolytes (polyols plus trehalose) in fungal decomposers were negatively correlated with plant litter water potentials (r = −0.75, P < 0.001) and rates of microbial respiration (r = −0.66, P < 0.001). The highest concentration of osmolytes (polyols plus trehalose) occurred in standing litter exposed to desiccating conditions (range from wet to dry, 0.06 to 0.68 μmol · mg of fungal biomass⁻¹). Similar fluctuations in polyol and trehalose concentrations were observed in standing litter wetted and dried under laboratory conditions and for four predominant fungal decomposers of J. effusus grown individually on sterilized Juncus leaves. These studies suggest that fungal inhabitants associated with standing litter of emergent macrophytes can adjust their intracellular solute concentrations in response to daily fluctuations in water availability.     

Dynamics of Bacterial and Fungal Communities on Decaying Salt Marsh Grass

Both bacteria and fungi play critical roles in decomposition processes in many natural environments, yet only rarely have they been studied as an integrated microbial community. Here we describe the bacterial and fungal assemblages associated with two decomposition stages of Spartina alterniflora detritus in a productive southeastern U.S. salt marsh. 16S rRNA genes and 18S-to-28S internal transcribed spacer (ITS) regions were used to target the bacterial and ascomycete fungal communities, respectively, based on DNA sequence analysis of isolates and environmental clones and by using community fingerprinting based on terminal restriction fragment length polymorphism (T-RFLP) analysis. Seven major bacterial taxa (six affiliated with the α-Proteobacteria and one with the Cytophagales) and four major fungal taxa were identified over five sample dates spanning 13 months. Fungal terminal restriction fragments (T-RFs) were informative at the species level; however, bacterial T-RFs frequently comprised a number of related genera. Amplicon abundances indicated that the salt marsh saprophyte communities have little-to-moderate variability spatially or with decomposition stage, but considerable variability temporally. However, the temporal variability could not be readily explained by either successional shifts or simple relationships with environmental factors. Significant correlations in abundance (both positive and negative) were found among dominant fungal and bacterial taxa that possibly indicate ecological interactions between decomposer organisms. Most associations involved one of four microbial taxa: two groups of bacteria affiliated with the α-Proteobacteria and two ascomycete fungi (Phaeosphaeria spartinicola and environmental isolate “4clt”).     

Fungal succession and decomposition of <Emphasis Type="Italic">Camellia japonica</Emphasis> leaf litter

Decomposition processes of Camellia japonica leaf litter were investigated over an 18-month period with reference to the role of fungal succession in the decomposition of lignin and holocellulose. Decomposition and fungal succession were studied in bleached and nonbleached portions of litter, which were precolonized by ligninolytic and cellulolytic fungi, respectively. Coccomyces nipponicum and Lophodermium sp. (Rhytismataceae), which can attack lignin selectively, caused mass loss of lignin and were responsible for bleaching during the first 4 months (stage I), whereas cellulolytic fungi caused mass loss of holocellulose in adjacent nonbleached portions. Soluble carbohydrates and polyphenols also decreased rapidly during this stage. Pestalotiopsis guepini, coelomycete sp.1, and the Nigrospora state of Khuskia oryzae caused mass loss of holocellulose between 4 and 14 months (stage II) and Xylaria sp. caused mass loss of both lignin and holocellulose from 14–18 months (stage III). In stages II and III, decomposition was more rapid in bleached portions than in nonbleached portions probably due to the prior delignification of lignified holocellulose in bleached portions. Frequencies of these fungi showed different responses among species to the pattern of changes in lignin and holocellulose contents during decomposition. Total hyphal length increased in both portions over the study period, but mycelia of basidiomycetes accounted for about 2% of total hyphal length, suggesting that their role in fungal succession and decomposition was low. Lignin and nitrogen contents were consistently lower and holocellulose content was higher in bleached portions than in nonbleached portions during decomposition. The succession of ligninolytic and cellulolytic fungi was a major driving factor that promoted decomposition and precolonization by ligninolytic fungi enhanced decomposition.     

Nitrogen availability affects saprotrophic basidiomycetes decomposing pine needles in a long term laboratory study

Fungi, especially basidiomycetous litter decomposers, are pivotal to the turnover of soil organic matter in forest soils. Many litter decomposing fungi have a well-developed capacity to translocate resources in their mycelia, a feature that may significantly affect carbon (C) and nitrogen (N) dynamics in decomposing litter. In an eight-month long laboratory study we investigated how the external availability of N affected the decomposition of Scots pine needles, fungal biomass production, N retention and N-mineralization by two litter decomposing fungi – Marasmius androsaceus and Mycena epipterygia. Glycine additions had a general, positive effect on fungal biomass production and increased accumulated needle mass loss after 8 months, suggesting that low N availability may limit fungal growth and activity in decomposing pine litter. Changes in the needle N pool reflected the dynamics of the fungal mycelium. During late decomposition stages, redistribution of mycelium and N out from the decomposed needles was observed for M. epipterygia, suggesting autophagous self degradation.     

Signature Wood Modifications Reveal Decomposer Community History

Correlating plant litter decay rates with initial tissue traits (e.g. C, N contents) is common practice, but in woody litter, predictive relationships are often weak. Variability in predicting wood decomposition is partially due to territorial competition among fungal decomposers that, in turn, have a range of nutritional strategies (rot types) and consequences on residues. Given this biotic influence, researchers are increasingly using culture-independent tools in an attempt to link variability more directly to decomposer groups. Our goal was to complement these tools by using certain wood modifications as ‘signatures’ that provide more functional information about decomposer dominance than density loss. Specifically, we used dilute alkali solubility (DAS; higher for brown rot) and lignin:density loss (L:D; higher for white rot) to infer rot type (binary) and fungal nutritional mode (gradient), respectively. We first determined strength of pattern among 29 fungi of known rot type by correlating DAS and L:D with mass loss in birch and pine. Having shown robust relationships for both techniques above a density loss threshold, we then demonstrated and resolved two issues relevant to species consortia and field trials, 1) spatial patchiness creating gravimetric bias (density bias), and 2) brown rot imprints prior or subsequent to white rot replacement (legacy effects). Finally, we field-tested our methods in a New Zealand Pinus radiata plantation in a paired-plot comparison. Overall, results validate these low-cost techniques that measure the collective histories of decomposer dominance in wood. The L:D measure also showed clear potential in classifying ‘rot type’ along a spectrum rather than as a traditional binary type (brown versus white rot), as it places the nutritional strategies of wood-degrading fungi on a scale (L:D=0-5, in this case). These information-rich measures of consequence can provide insight into their biological causes, strengthening the links between traits, structure, and function during wood decomposition.     

Effects of Experimental Nitrogen and Phosphorus Addition on Litter Decomposition in an Old-Growth Tropical Forest

The responses of litter decomposition to nitrogen (N) and phosphorus (P) additions were examined in an old-growth tropical forest in southern China to test the following hypotheses: (1) N addition would decrease litter decomposition; (2) P addition would increase litter decomposition, and (3) P addition would mitigate the inhibitive effect of N addition. Two kinds of leaf litter, Schima superba Chardn. & Champ. (S.S.) and Castanopsis chinensis Hance (C.C.), were studied using the litterbag technique. Four treatments were conducted at the following levels: control, N-addition (150 kg N ha⁻¹ yr⁻¹), P-addition (150 kg P ha⁻¹ yr⁻¹) and NP-addition (150 kg N ha⁻¹ yr⁻¹ plus 150 kg P ha⁻¹ yr⁻¹). While N addition significantly decreased the decomposition of both litters, P addition significantly inhibited decomposition of C.C., but did not affect the decomposition of S.S. The negative effect of N addition on litter decomposition might be related to the high N-saturation in this old-growth tropical forest; however, the negative effect of P addition might be due to the suppression of “microbial P mining”. Significant interaction between N and P addition was found on litter decomposition, which was reflected by the less negative effect in NP-addition plots than those in N-addition plots. Our results suggest that P addition may also have negative effect on litter decomposition and that P addition would mitigate the negative effect of N deposition on litter decomposition in tropical forests.     

Litter quality,decomposition rates and saprotrophic mycoflora in Fallopia japonica (Houtt.) Ronse Decraene and in adjacent native grassland vegetation

Fallopia japonica succeeds in invading different ecosystems likely because of its huge biomass production. This biomass is characterized by low nutritional quality and low decomposition rates but knowledge on whether these features are correlated to microbial decomposers is still lacking. The aims of this work were: i) to determine litter decomposition rates of native grassland vegetation and F. japonica under different conditions in a year-round experiment; ii) to evaluate litter quality and/or site effect on the decomposition of the invader and native vegetation and iii) to characterize mycoflora isolated from F. japonica and native vegetation litter. The results showed that F. japonica litter decomposes 3–4 times slower than that of native grassland, mainly due to its low N content and consequently high C/N ratio both in leaves and stems. As decomposition proceeds C/N in F. japonica litter decreases to values approaching those of the grassland litter. Site had no effect on the decomposition rates of F. japonica and grassland litter. Total fungal load and composition differed between F. japonica and native litter, and also varied across sites. These results indicate that the successful invasive plant F. japonica affects the structure and functions of the invaded ecosystem through a huge production of low quality, slow-decomposing litter that selects saprotrophic fungi.     

Leaf Litter Mixtures Alter Microbial Community Development: Mechanisms for Non-Additive Effects in Litter Decomposition

To what extent microbial community composition can explain variability in ecosystem processes remains an open question in ecology. Microbial decomposer communities can change during litter decomposition due to biotic interactions and shifting substrate availability. Though relative abundance of decomposers may change due to mixing leaf litter, linking these shifts to the non-additive patterns often recorded in mixed species litter decomposition rates has been elusive, and links community composition to ecosystem function. We extracted phospholipid fatty acids (PLFAs) from single species and mixed species leaf litterbags after 10 and 27 months of decomposition in a mixed conifer forest. Total PLFA concentrations were 70% higher on litter mixtures than single litter types after 10 months, but were only 20% higher after 27 months. Similarly, fungal-to-bacterial ratios differed between mixed and single litter types after 10 months of decomposition, but equalized over time. Microbial community composition, as indicated by principal components analyses, differed due to both litter mixing and stage of litter decomposition. PLFA biomarkers a15∶0 and cy17∶0, which indicate gram-positive and gram-negative bacteria respectively, in particular drove these shifts. Total PLFA correlated significantly with single litter mass loss early in decomposition but not at later stages. We conclude that litter mixing alters microbial community development, which can contribute to synergisms in litter decomposition. These findings advance our understanding of how changing forest biodiversity can alter microbial communities and the ecosystem processes they mediate.     

Invasive Grass Alters Litter Decomposition by Influencing Macrodetritivores

The results of nitrogen (N) fertilization experiments have shown inconsistent rates of plant litter decomposition, a phenomenon that may be explained by dispropotionate influence of animal detritivores (macro-detritivores) on litter mass loss versus that of microbial decomposers, whose activity may be dependent on inorganic N. In turn, macrodetritivores may be influenced by plant species composition via their selection of optimal food resources and habitats. In our experiment, fertilizer had no apparent effect on litter decomposition, suggesting that microbial decomposers did not use the additional inorganic N and/or that macrodetritivores had a greater influence on decomposition. Manipulation of macrodetritivores suggested that plant species composition—dominated in this study by Festuca arundinacea, an exotic, invasive grass, and Aster ericoides, a native forb—caused shifts in detrivore communities and/or feeding patterns that tended to increase litter mass loss. Canopy cover of F. arundinacea and A. ericoides ranged from 0% to 11%, suggesting that low-intensity invasion may produce significant changes in ecosystem function, such as decomposition.     

Direct and indirect effects of the fungal endophyte <Emphasis Type="Italic">Epichloë uncinatum</Emphasis> on litter decomposition of the host grass, <Emphasis Type="Italic">Schedonorus pratensis</Emphasis>

Microbial plant symbionts have been suggested to mediate plant-soil feedback and affect ecosystem functions. Systemic Epichloë fungal endophytes of grasses are found to mediate litter decomposition. These effects are often linked to alkaloids produced by Epichloë species, which are hypothesized to negatively affect decomposers. Although endophytes have been found to affect plant community and soil biota, direct (through litter quality) and indirect (through the environment) effects of fungal endophytes on litter decomposition have been scarcely scrutinized. We placed litterbags with endophyte-symbiotic (E+) and non-symbiotic (E?) Schedonorus pratensis plant litter in plots dominated by E+ or E? plants of the same species, and followed the dynamics of mass losses over time. We predicted the endophyte would hinder decomposition through changes in litter quality and that both types of litter would decompose faster in home environments. E+ litter decomposed faster in both environments. The mean difference between decomposition rate of E+ and E? litter tended to be higher in E? plots. Nitrogen and phosphorus, two elements usually associated with high decomposition rates, were significantly lower in E+ litter. We also detected a higher proportion of C in the cellulose form in E+ litter. Contrary to the general assumption, we found that symbiosis with Epichloë fungal endophytes can be associated with higher decomposition of plant litter. Since direct effects of Epichloë fungi were still stronger than indirect effects, it is suggested that besides the alkaloids, other changes in plant biomass would explain in a context-dependent manner, the endophyte effects on the litter decomposition.     

Post-harvest sugarcane residue degradation by autochthonous fungi

Several fungal species were isolated from different sources: post-harvest sugarcane residue, soil, decomposing forest litter and from mycelia obtained from the inner parts of fresh fungal fruiting bodies collected in Las Yungas region (Argentina). These isolates were first screened for their ability to produce carboxymethyl cellulose (CMC) degradation and guaiacol oxidation. After primary screening, seventeen isolates were further tested for their ligninolytic ability by assessing polyphenoloxidase, laccase, manganese peroxidase and endoxylanase activities. Based on their lignocellulolytic activities, five isolates (named Bjerkandera sp. Y-HHM2, Phanerochaete sp. Y-RN1, Pleurotus sp. Y-RN3, Hypocrea nigricans SCT-4.4 and Myrothecium sp. S-3.20) were selected for liquid and solid-state fermentation assays in culture media including sugarcane debris. Lignocellulolytic enzymes production, dry mass loss and phenol concentration in the water soluble fraction were then evaluated. Results suggest that native strains with lignocellulolytic activity are suitable to increase post-harvest sugarcane residue decomposition and support the use of these strains as an alternative to pre and post-harvest burning. Biological treatments using Phanerochaete sp. Y-RN1, Pleurotus sp. Y-RN3 and Myrothecium sp. S-3.20 could be used to degrade and increase the accessibility to lignocellulose components of sugarcane residue.     

Enzyme activities of fungi associated with Picea abies needles

Decomposition of Picea abies needles and production of extracellular enzymes involved in decomposition of lignin, cellulose, hemicelluloses and other organic compounds were studied in fungal strains of interior needle colonizers isolated from needles in different stages of decomposition (attached to trees, and early and late decomposition stages in the litter horizon). In total, 12 strains of ascomycetes (members of Helotiales, Hypocreales, Dothideales, Diaporthales and Eurotiales) and four basidiomycetes (Polyporales, Agaricales and Russulales) were tested. Significant decomposition of needles was recorded for all fungal isolates. All isolates produced cellobiohydrolase, β-glucosidase, β-xylosidase, N-acetylglucosaminidase, α-glucosidase, phosphatase and arylsulfatase and most fungi also produced endocellulase, endoxylanase and laccase in needle litter. In addition, other hemicellulases were produced by all strains. Mn-peroxidase was only produced by two basidiomycetes. Although enzyme activities varied, fungi associated with needles on fallen trees exhibited enzyme production comparable with later litter colonizers, and there was no significant difference in enzyme production between ascomycete and basidiomycete strains.     

Influence of Different Forest System Management Practices on Leaf Litter Decomposition Rates,Nutrient Dynamics and the Activity of Ligninolytic Enzymes: A Case Study from Central European Forests

Leaf litter decomposition is the key ecological process that determines the sustainability of managed forest ecosystems, however very few studies hitherto have investigated this process with respect to silvicultural management practices. The aims of the present study were to investigate the effects of forest management practices on leaf litter decomposition rates, nutrient dynamics (C, N, Mg, K, Ca, P) and the activity of ligninolytic enzymes. We approached these questions using a 473 day long litterbag experiment. We found that age-class beech and spruce forests (high forest management intensity) had significantly higher decomposition rates and nutrient release (most nutrients) than unmanaged deciduous forest reserves (P<0.05). The site with near-to-nature forest management (low forest management intensity) exhibited no significant differences in litter decomposition rate, C release, lignin decomposition, and C/N, lignin/N and ligninolytic enzyme patterns compared to the unmanaged deciduous forest reserves, but most nutrient dynamics examined in this study were significantly faster under such near-to-nature forest management practices. Analyzing the activities of ligninolytic enzymes provided evidence that different forest system management practices affect litter decomposition by changing microbial enzyme activities, at least over the investigated time frame of 473 days (laccase, P<0.0001; manganese peroxidase (MnP), P = 0.0260). Our results also indicate that lignin decomposition is the rate limiting step in leaf litter decomposition and that MnP is one of the key oxidative enzymes of litter degradation. We demonstrate here that forest system management practices can significantly affect important ecological processes and services such as decomposition and nutrient cycling.     

Diversification of Fungal Chitinases and Their Functional Differentiation in Histoplasma capsulatum

Chitinases enzymatically hydrolyze chitin, a highly abundant and utilized polymer of N-acetyl-glucosamine. Fungi are a rich source of chitinases; however, the phylogenetic and functional diversity of fungal chitinases are not well understood. We surveyed fungal chitinases from 373 publicly available genomes, characterized domain architecture, and conducted phylogenetic analyses of the glycoside hydrolase (GH18) domain. This large-scale analysis does not support the previous division of fungal chitinases into three major clades (A, B, C) as chitinases previously assigned to the “C” clade are not resolved as distinct from the “A” clade. Fungal chitinase diversity was partly shaped by horizontal gene transfer, and at least one clade of bacterial origin occurs among chitinases previously assigned to the “B” clade. Furthermore, chitin-binding domains (including the LysM domain) do not define specific clades, but instead are found more broadly across clades of chitinases. To gain insight into biological function diversity, we characterized all eight chitinases (Cts) from the thermally dimorphic fungus, Histoplasma capsulatum: six A clade, one B clade, and one formerly classified C clade chitinases. Expression analyses showed variable induction of chitinase genes in the presence of chitin but preferential expression of CTS3 in the mycelial stage. Activity assays demonstrated that Cts1 (B-I), Cts2 (A-V), Cts3 (A-V), Cts4 (A-V) have endochitinase activities with varying degrees of chitobiosidase function. Cts6 (C-I) has activity consistent with N-acetyl-glucosaminidase exochitinase function and Cts8 (A-II) has chitobiase activity. These results suggest chitinase activity is variable even within subclades and that predictions of functionality require more sophisticated models.     

Home-field advantage in decomposition of leaf litter and insect frass

Home-field advantage (HFA) hypothesis regarding litter decomposition states that litter is decomposed more rapidly in the habitat from which it is derived (i.e., home) than in other habitat (i.e., away) due to local adaptation of soil decomposers. We tested the HFA hypothesis regarding decomposition of leaf litter, insect frass, and their mixtures, using laboratory incubation of leaf litter from an evergreen (Pinus densiflora) and a deciduous (Quercus acutissima) tree species, frass excreted by two insect herbivores (Dendrolimus spectabilis and Lymantria dispar) fed on one of the two trees, and soil collected underneath the two trees. We found evidence that decomposers in each soil were specialized to decompose the litter derived from the tree species above them, indicating that the HFA occurred in litter decomposition. In contrast, the HFA was not detected in the decomposition of insect frass or litter-frass mixtures. Mixing with D. spectabilis frass non-additively decelerated, while mixing with L. dispar frass non-additively accelerated, decomposition of the mixtures, independent of soil and litter types. These indicate that the presence of insect herbivores may make it difficult to form and maintain a decomposer community specialized to a certain leaf litter, and that it may consequently cancel or weaken HFA in litter decomposition.     

Enhanced summer warming reduces fungal decomposer diversity and litter mass loss more strongly in dry than in wet tundra

Many Arctic regions are currently experiencing substantial summer and winter climate changes. Litter decomposition is a fundamental component of ecosystem carbon and nutrient cycles, with fungi being among the primary decomposers. To assess the impacts of seasonal climatic changes on litter fungal communities and their functioning, Betula glandulosa leaf litter was surface‐incubated in two adjacent low Arctic sites with contrasting soil moisture regimes: dry shrub heath and wet sedge tundra at Disko Island, Greenland. At both sites, we investigated the impacts of factorial combinations of enhanced summer warming (using open‐top chambers; OTCs) and deepened snow (using snow fences) on surface litter mass loss, chemistry and fungal decomposer communities after approximately 1 year. Enhanced summer warming significantly restricted litter mass loss by 32% in the dry and 17% in the wet site. Litter moisture content was significantly reduced by summer warming in the dry, but not in the wet site. Likewise, fungal total abundance and diversity were reduced by OTC warming at the dry site, while comparatively modest warming effects were observed in the wet site. These results suggest that increased evapotranspiration in the OTC plots lowered litter moisture content to the point where fungal decomposition activities became inhibited. In contrast, snow addition enhanced fungal abundance in both sites but did not significantly affect litter mass loss rates. Across sites, control plots only shared 15% of their fungal phylotypes, suggesting strong local controls on fungal decomposer community composition. Nevertheless, fungal community functioning (litter decomposition) was negatively affected by warming in both sites. We conclude that although buried soil organic matter decomposition is widely expected to increase with future summer warming, surface litter decay and nutrient turnover rates in both xeric and relatively moist tundra are likely to be significantly restricted by the evaporative drying associated with warmer air temperatures.     

Litter composition rather than plant presence affects decomposition of tropical litter mixtures

Litter decomposition is strongly controlled by litter quality, but the composition of litter mixtures and potential interactions with live plants through root activity may also influence decomposers. In a greenhouse experiment in French Guiana we studied the combined effects of the presence of tropical tree seedlings and of distinct litter composition on mass and nitrogen (N) loss from decomposing litter and on microbial biomass. Different litter mixtures decomposed for 435 days in pots filled with sand and containing an individual seedling from one of four different tree species. We found both additive and negative non-additive effects (NAE) of litter mixing on mass loss, whereas N loss showed negative and positive NAE of litter mixing. If litter from the two tree species, Platonia insignis and Goupia glabra were present, litter mixtures showed more positive and more negative NAE on N loss, respectively. Overall, decomposition, and in particular non-additive effects, were only weakly affected by the presence of tree seedlings. Litter mass loss weakly yet significantly decreased with increasing fine root biomass in presence of Goupia seedlings, but not in the presence of seedlings of any other tree species. Our results showed strong litter composition effects and also clear, mostly negative, non-additive effects on mass loss and N loss. Species identity of tree seedlings can modify litter decomposition, but these live plant effects remain quantitatively inferior to litter composition effects.     

Fish farming impact on decomposition of Posidonia oceanica litter

Fish farming impact on decomposition and loss of carbon, nitrogen and phosphorus fixed in seagrass litter were studied in a Posidonia oceanica meadow (Aegean Sea, Greece) using in situ incubation of senescent seagrass leaves collected under (station: cages) and away (station: control) from fish cages and deployed in a cross design of origin/station. Decomposition rate and loss of carbon and nitrogen fixed in seagrass litter were pronounced under the cages while loss of phosphorus was less evident. Decomposition was related to nutrient availability in seagrass tissue and pore water, sediment organic matter and origin of seagrass litter. When incubated under the cages, litter originated from the control decomposed faster than litter originated from the cages since the former was qualitatively better substrate for decomposers and the nutrient conditions in that station were enriched in the pore water and sediment. The lower decomposition of litter originated from cages suggests that seagrass tissues under the cages accumulate chemical deterrents, possibly in order to confront high grazing pressure, which on the other hand reduces the rate of decomposition.     

Assessing the Effect of Litter Species on the Dynamic of Bacterial and Fungal Communities during Leaf Decomposition in Microcosm by Molecular Techniques

Although bacteria and fungi are well-known to be decomposers of leaf litter, few studies have examined their compositions and diversities during the decomposition process in tropical stream water. Xishuangbanna is a tropical region preserving one of the highest floristic diversity areas in China. In this study, leaf litter of four dominant plant species in Xishuangbanna was incubated in stream water for 42 days during which samples were taken regularly. Following DNA extraction, PCR-DGGE (denaturing gradient gel electrophoresis) and clone-sequencing analyses were performed using bacterial and fungal specific primers. Leaf species have slightly influences on bacterial community rather than fungal community. The richness and diversity of bacteria was higher than that of fungi, which increased towards the end of the 42-day-incubation. The bacterial community was initially more specific upon the type of leaves and gradually became similar at the later stage of decomposition with alpha-proteobacteria as major component. Sequences affiliated to methanotrophs were obtained that indicates potentially occurrence of methane oxidation and methanogenesis. For the fungal community, sequences affiliated to Aspergillus were predominant at the beginning and then shifted to Pleosporales. Our results suggest that the microorganisms colonizing leaf biofilm in tropical stream water were mostly generalists that could exploit the resources of leaves of various species equally well.     

Salinisation effects on leaf litter decomposition in fresh waters: Does the ionic composition of salt matter?

1. Salinisation (i.e. increased ion concentrations) in fresh waters is a growing threat worldwide that impacts freshwater communities. However, less is known about how increased salt concentrations affect key ecosystem processes such as leaf decomposition.
2. We designed a laboratory experiment to assess the effects of a concentration gradient (1, 3, and 6 g/L) of three different salts (NaCl, CaCl₂ and CH₃CO₂K), on leaf litter decomposition mediated by microbial decomposers and the larvae of a cased caddis fly (Schizopelex festiva, Trichoptera). Leaf discs of Quercus robur inoculated with microbial decomposers (a mixture of 5 fungal species) were incubated in microcosms under every possible salt × concentration combination and without salt addition (control), with a single individual of the cased caddis fly. Half of the leaf disks were not available for consumption by the trichopteran and represent a microbial only treatment when leaf mass loss was measured.
3. Leaf decomposition driven by microbial decomposers was not affected by salinity despite the fact that all salt treatments depressed fungal biomass and microbial respiration compared to the control. However, the caddis flies were strongly affected by the high salt concentrations and consumed less leaf material at 6 g/L salt concentrations compared to control microcosms. The feeding activity of the trichopteran further depended on the salt type: CaCl₂ had the most deleterious effects.
4. Salinisation of fresh waters depresses leaf litter decomposition, mainly through deleterious effects on detritivores, the magnitude of the response being dependent on the ionic composition. Our results reiterate the need to reduce terrestrial run-off of salts into fresh waters because salinisation (especially increased levels of CaCl₂) affects invertebrates and the key ecosystem processes they drive.