Genetic Variation In Vitro and In Vivo of an Attenuated Lassa Vaccine Candidate

The attenuated Lassa vaccine candidate ML29 is a laboratory-produced reassortant between Lassa and Mopeia viruses, two Old World arenaviruses that differ by 40% in nucleic acid sequence. In our previous studies, ML29 elicited sterilizing immunity against Lassa virus challenge in guinea pigs and marmosets and virus-specific cell-mediated immunity in both simian immunodeficiency virus (SIV)-infected and uninfected rhesus macaques. Here, we show that ML29 is stable after 12 passages in vitro without losing its plaque morphology or its attenuated phenotype in suckling mice. Additionally, we used deep sequencing to characterize the viral population comprising the original stock of ML29, the stock of ML29 after 12 passages in Vero cells, and the ML29 isolates obtained from vaccinated animals. Twenty-seven isolates bore approximately 77 mutations that exceeded 20% of the single-nucleotide polymorphism (SNP) changes at any single locus. Of these 77 mutations, 5 appeared to be host specific, for example, appearing in mice but not in primates. None of these mutations were reversions of ML29 to the sequences of the parental Lassa and Mopeia viruses. The host-specific mutations indicate viral adaptations to virus-host interactions, and such interactions make reasonable targets for antiviral approaches. Variants capable of chronic infection did not emerge from any of the primate infections, even in immune-deficient animals, indicating that the ML29 reassortant is reasonably stable in vivo. In conclusion, the preclinical studies of ML29 as a Lassa virus vaccine candidate have been advanced, showing high levels of protection in nonhuman primates and acceptable stability both in vitro and in vivo.     

Intraclonal Genetic Variation for Protoplast Regenerative Ability Within Solanum tuberosum cv. Record

The potato cv. Record is recognized as a recalcitrant cultivarin tissue culture and attempts in the past to obtain regenerationfrom protoplasts continually failed, despite media and protocolalterations. By sampling a large number of Record tubers, significantdifferences between lines were obtained for regeneration fromleaf discs. Eight such lines exhibiting a range of responseto regeneration from leaf discs were, used in the present studyto examine protoplast culture response. Significant variationwas detected in protoplast plating efficiency and in the numberof regenerants produced. These results are discussed in relationto the exploitation of protoplasts in potato improvement andin terms of the role of tissue culture techniques for the maintenanceof potato cultivars. Solanum tuberosum, cv. Record, potato, protoplasts, intraclonal variation     

Intraclonal Genetic Variation for Protoplast Regenerative Ability Within Solatium tuberosum cv. Record

The potato cv. Record is recognized as a recalcitrant cultivarin tissue culture and attempts in the past to obtain regenerationfrom protoplasts continually failed, despite media and protocolalterations. By sampling a large number of Record tubers, significantdifferences between lines were obtained for regeneration fromleaf discs. Eight such lines exhibiting a range of responseto regeneration from leaf discs were used in the present studyto examine protoplast culture response. Significant variationwas detected in protoplast plating efficiency and in the numberof regenerants produced. These results are discussed in relationto the exploitation of protoplasts in potato improvement andin terms of the role of tissue culture techniques for the maintenanceof potato cultivars. Solarium tuberosum, cv. Record, potato, protoplasts, intraclonal variation     

Photo- and Gravitropic Bending of Potato Plantlets Obtained In Vitro from Single-Node Explants

Etiolated and light-grown plantlets obtained from potato shoot cultures were shown to perform vigorous tropic movements. Unilateral blue irradiation actively induced phototropic curvature of the shoots toward the light source, although etiolated plantlets required ten times longer stimulation than the light-grown plantlets to achieve a 90° angle. The fluence requirements for induction of second positive phototropism (PT) of light-grown plantlets spanned almost five orders of magnitude (~30–1.7?×?10⁵ μmol/m²). Upon responding to unilateral blue light by curving, plantlets entered the process of straightening after irradiation ended. Straightening also occurred in plantlets placed on a clinostat but it was of lower magnitude. Compared to early-morning and day-time hours, plantlets exhibited a significantly lower PT response in the late afternoon (5 p.m.) and gravitropic (GT) response at the end of the day (11 p.m.), suggesting that these responses may be under the control of circadian rhythms. GT was also recorded for both light-grown and etiolated plantlets. Ninety-degree stimulation, used to induce GT in etiolated plantlets, needed to be 50?% longer than stimulation used for light-grown plantlets to induce a similar response. Straightening was also recorded for the shoots that exhibited GT but was smaller when plantlets were placed on a clinostat compared to straightening exhibited by those plantlets left standing in an upright position for 2?h.     

In Situ Prebiotics for Weaning Piglets: In Vitro Production and Fermentation of Potato Galacto-Rhamnogalacturonan

Postweaning diarrhea (PWD) in pigs is a leading cause of economic loss in pork production worldwide. The current practice of using antibiotics and zinc to treat PWD is unsustainable due to the potential of antibiotic resistance and ecological disturbance, and novel methods are required. In this study, an in vitro model was used to test the possibility of producing prebiotic fiber in situ in the gastrointestinal (GI) tract of the piglet and the prebiotic activity of the resulting fiber in the terminal ileum. Soluble fiber was successfully produced from potato pulp, an industrial waste product, with the minimal enzyme dose in a simulated upper GI tract model extracting 26.9% of the initial dry matter. The fiber was rich in galactose and galacturonic acid and was fermented at 2.5, 5, or 10 g/liter in a glucose-free medium inoculated with the gut contents of piglet terminal ileum. Fermentations of 5 g/liter inulin or 5 g/liter of a purified potato fiber were used as controls. The fibers showed high fermentability, evident by a dose-dependent drop in pH and an increase in the organic acid content, with lactate in particular being increased. Deep sequencing showed a significant increase in the numbers of Lactobacillus and Veillonella organisms and an insignificant increase in the numbers of Clostridium organisms as well as a decrease in the numbers of Streptococcus organisms. Multivariate analysis showed clustering of the treatment groups, with the group treated with purified potato fiber being clearly separated from the other groups, as the microbiota composition was 60% Lactobacillus and almost free of Clostridium. For animal studies, a dosage corresponding to the 5-g/liter treatment is suggested.     

Sago: An Alternative Cheap Gelling Agent for Potato In Vitro Culture

Sago, a processed (gelatinized) edible starch, was successfully used as a gelling agent in culture medium. The efficacy of sago-gelled (80 g dm^–3) medium was studied in ten potato (Solanum tuberosum L.) genotypes during micropropagation and minimal growth conservation. Sago starch provided a firm gelling surface throughout the entire culture period, and fostered optimum plantlet growth in terms of shoot height, number of nodes per plant, number of leaves and fresh mass. No softening of the sago-gelled medium occurred over prolonged (six months) storage. The study showed that sago starch could be used as a substitute to agar in culture medium to substantially reduce the medium cost.     

In Vitro Propagation of Potato (Solanum tuberosum L.)

Potato shoots were propagated in vitro by placing nodes fromsprouted tubers on Murashige and Skoog type medium without hormones.The vigour of growth and the rate of node production increasedwith both day-length and temperature over the ranges 8–24h and 15–25 °C respectively. Propagation rates ofup to x 10 per month were obtained. In vitro plantlets spontaneouslyformed roots either in agar or liquid cultures. Plantlets leftin the culture jars for 3–4 months eventually senescedand formed small tubers in 16 and 24 h day-lengths. In a day-lengthof 8 h vegetative growth continued by branching and no tuberswere formed. Solanum tuberosum L., potato, tissue culture, propagation, temperature, day-length     

Genetic Variation and Recent Positive Selection in Worldwide Human Populations: Evidence from Nearly 1 Million SNPs

Background

Genome-wide scans of hundreds of thousands of single-nucleotide polymorphisms (SNPs) have resulted in the identification of new susceptibility variants to common diseases and are providing new insights into the genetic structure and relationships of human populations. Moreover, genome-wide data can be used to search for signals of recent positive selection, thereby providing new insights into the genetic adaptations that occurred as modern humans spread out of Africa and around the world.

Methodology

We genotyped approximately 500,000 SNPs in 255 individuals (5 individuals from each of 51 worldwide populations) from the Human Genome Diversity Panel (HGDP-CEPH). When merged with non-overlapping SNPs typed previously in 250 of these same individuals, the resulting data consist of over 950,000 SNPs. We then analyzed the genetic relationships and ancestry of individuals without assigning them to populations, and we also identified candidate regions of recent positive selection at both the population and regional (continental) level.

Conclusions

Our analyses both confirm and extend previous studies; in particular, we highlight the impact of various dispersals, and the role of substructure in Africa, on human genetic diversity. We also identified several novel candidate regions for recent positive selection, and a gene ontology (GO) analysis identified several GO groups that were significantly enriched for such candidate genes, including immunity and defense related genes, sensory perception genes, membrane proteins, signal receptors, lipid binding/metabolism genes, and genes involved in the nervous system. Among the novel candidate genes identified are two genes involved in the thyroid hormone pathway that show signals of selection in African Pygmies that may be related to their short stature.     

Cardioprotective Properties of Omentin-1 in Type 2 Diabetes: Evidence from Clinical and In Vitro Studies

Context

Adipokines are linked to the development of cardiovascular dysfunction in type 2 diabetes (DM2). In DM2-patients, circulating levels of omentin-1, an adipokine preferentially expressed in epicardial adipose tissue, are decreased. This study investigated whether omentin-1 has a cardioprotective function.

Methods

Omentin-1 levels in plasma and cardiac fat depots were determined in DM2-patients versus controls. Moreover, the relation between omentin-1 levels and cardiac function was examined in men with uncomplicated DM2. Finally, we determined whether omentin-1 could reverse the induction of cardiomyocyte dysfunction by conditioned media derived from epicardial adipose tissue from patients with DM2.

Results

Omentin-1 was highly expressed and secreted by epicardial adipose tissue, and reduced in DM2. Circulating omentin-1 levels were lower in DM2 versus controls, and positively correlated with the diastolic parameters early peak filling rate, early deceleration peak and early deceleration mean (all P<0.05). The improved diastolic function following pioglitazone treatment associated with increases in omentin-1 levels (P<0.05). In vitro, exposure of cardiomyocytes to conditioned media derived from epicardial adipose tissue from patients with DM2 induced contractile dysfunction and insulin resistance, which was prevented by the addition of recombinant omentin.

Conclusion

These data identify omentin-1 as a cardioprotective adipokine, and indicate that decreases in omentin-1 levels could contribute to the induction of cardiovascular dysfunction in DM2.     

Neisseria gonorrhoeae II. Colonial Variation and Pathogenicity During 35 Months In Vitro

During 35 months of selective in vitro cultivation, Neisseria gonorrhoeae cells retained their virulence for humans and were shown to be closely related to a particular colonial morphology. Saline-autoagglutinability was the only other characteristic distinguishing virulent from avirulent cells. Human responses to challenge with cells of the different colonial types were studied for their relationships to virulence or avirulence.     

In Vitro Regeneration from Internodal Explants and Somaclonal Variation in Chickpea (Cicer arietinum L)

Protocols have been developed for the in vitro regeneration of plants from calli derived from internode explants of chickpea (Cicer arietinum L) cv Pusa-372. Callusing was induced on both B5 and MS media supplemented with different combinations and concentrations of auxins and cytokinins, but shoot regeneration was achieved only in B5 medium supplemented with 4.0 mg l^?1 IAA and 0.5 mg l^?1 BAP after serial subculture of callus on media with increasing concentration of IAA and constant concentration of BAP. Rooting could not be achieved in in vitro regenerated shoots on any one of the media tried. Complete plantlets were, therefore, developed through grafting of the in vitro regenerated shoot on established root stock. The grafting methodology was found to be highly efficient and reproducible. The somaclones developed produced viable seeds which showed variability in terms of seed colour and seed weight. Thus, the protocols developed in this study remove one important bottleneck in the development of transgenic chickpea.     

Genetic Study of the Rice Embryo Culture In Vitro

The embryo culture in vitro response was examined among ten rice (Oryza sativa L.) cultivars and 26 cross combinations to evaluate the correlation between callus induction rate and differentiation rate with plantlet regeneration rate, the influence of parents to hybrid Fl embryo culture in vitro as well as the cytoplasmic effects. Plantlet regeneration rate was used as the product of callus production and regeneration capacity. The ten pure-lines, the five F1s and their reciprocal hybrid as well as the ten F1s among the ten lines were evaluated for callus production and regeneration capaticy. Significant variation was observed among the 36 genotypes in callus induction rate, callus differentiation rate and plantlet regeneration rate on embryo culture in vitro. The positive correlation between general callus induction rate and differentiation rate with plantlet regeneration rate was significant. There was a similar trend for callus induction rate between maternal parents and Fis during mature embryo culture in vitro. However, parent-offspring correlation for callus differentiation rate and plantlet regeneration rate were nonsignificant. Whether cytoplasmic effects for embryo culture response exist among the six pure-lines was examined py the differences between reciprocal F1 hybrids. The extent of cytoplasmic effects depended on cross combination.     

Overexpressing AtCKX1 in Potato Plants grown In Vitro: The Effects on Cytokinin Composition and Tuberization

Journal of Plant Growth Regulation - Over the last years, cytokinin deficiency has been studied in a variety of plant species, using transgenic expression of cytokinin oxidase/dehydrogenase genes...     

Complete In Vitro Life Cycle of Trypanosoma congolense: Development of Genetic Tools

Background

Animal African trypanosomosis, a disease mainly caused by the protozoan parasite Trypanosoma congolense, is a major constraint to livestock productivity and has a significant impact in the developing countries of Africa. RNA interference (RNAi) has been used to study gene function and identify drug and vaccine targets in a variety of organisms including trypanosomes. However, trypanosome RNAi studies have mainly been conducted in T. brucei, as a model for human infection, largely ignoring livestock parasites of economical importance such as T. congolense, which displays different pathogenesis profiles. The whole T. congolense life cycle can be completed in vitro, but this attractive model displayed important limitations: (i) genetic tools were currently limited to insect forms and production of modified infectious BSF through differentiation was never achieved, (ii) in vitro differentiation techniques lasted several months, (iii) absence of long-term bloodstream forms (BSF) in vitro culture prevented genomic analyses.

Methodology/Principal Findings

We optimized culture conditions for each developmental stage and secured the differentiation steps. Specifically, we devised a medium adapted for the strenuous development of stable long-term BSF culture. Using Amaxa nucleofection technology, we greatly improved the transfection rate of the insect form and designed an inducible transgene expression system using the IL3000 reference strain. We tested it by expression of reporter genes and through RNAi. Subsequently, we achieved the complete in vitro life cycle with dramatically shortened time requirements for various wild type and transgenic strains. Finally, we established the use of modified strains for experimental infections and underlined a host adaptation phase requirement.

Conclusions/Significance

We devised an improved T. congolense model, which offers the opportunity to perform functional genomics analyses throughout the whole life cycle. It represents a very useful tool to understand pathogenesis mechanisms and to study potential therapeutic targets either in vitro or in vivo using a mouse model.     

Cysteine: Depolarization-Induced Release from Rat Brain In Vitro

Compounds released on depolarization in a Ca2+-dependent manner from rat brain slices were screened to identify candidates for neuroactive substances. Lyophilized superfusates were analyzed by reversed-phase HPLC after derivatization with 9-fluorenyl N-succinimidyl carbonate. One of the compounds that showed an increase of concentration in superfusates in the presence of iodoacetamide was identified as the cysteine (Cys) derivative, S-carboxamidomethylcysteine, by fast atom bombardment mass spectrometry and other methods. This stable Cys derivative originates from endogenous, extracellular Cys. The finding led to a method for quantification of Cys in superfusates by immediate cooling of the superfusates to 0 degrees C and reaction of Cys with N-ethylmaleimide. Depolarization-induced Ca2+-dependent release of Cys was most prominent in the neocortex, followed by the mesodiencephalon, striatum, and cerebellum. This suggests that Cys is released from a neuronal compartment and might be involved in neurotransmission.     

Evidence for Excision of Ultraviolet-Induced Pyrimidine Dimers from the DNA of Human Cells In Vitro

Within 12-24 hr after human cells were irradiated with ultraviolet light, approximately 50% of the ultraviolet-induced pyrimidine dimers were lost from the DNA. Pyrimidine dimers were found in the TCA-soluble fraction of ultraviolet-irradiated cells at 24 hr. Excess thymidine, caffeine, or hydroxyurea had no effect on the loss of pyrimidine dimers from the DNA of ultraviolet-irradiated cells.     

球子蕨孢子的无菌繁殖

以球子蕨成熟孢子为外植体,研究了不同激素及浓度对其孢子萌发、愈伤组织诱导、丛生芽分化及生根的影响。结果表明：孢子萌发最适培养基为1／2MS＋2％蔗糖,20d后萌发率达55．7％;诱导愈伤组织的最适培养基为MS＋0．5mg·L-1 KT＋0．5mg·L～2,4-D,诱导率达36％,愈伤组织为绿色颗粒状;颗粒状愈伤组织在不添加激素的MS培养基中即可生长出大量丛生芽,转化率可达49．3％;低浓度（0．2mg·L-1）的IAA可有效促进幼孢子体苗生根。