一株养殖水体中亚硝酸盐去除菌的鉴定及其去除条件

【目的】从养殖污泥中分离筛选优良亚硝酸盐去除菌,并对其去除条件进行研究。【方法】从养殖污泥中分离亚硝酸盐去除菌,进一步通过测定比较分离菌株对亚硝酸盐的去除率,筛选优良的亚硝酸盐去除菌,通过API ID32GN细菌鉴定系统以及16S rDNA序列分析法对其进行鉴定,并采用单因子法研究其去除亚硝酸盐的条件。【结果】从养殖污泥中分离筛选了一株优良的亚硝酸盐去除菌AQ-3,其对50 mg/L亚硝酸盐的去除率高达99.47%。菌株AQ-3被鉴定为鲍曼氏不动杆菌(Acinetobacter baumannii)(GenBank登录号:JF751054.1),其16S rDNA序列与基因库中不动杆菌属菌株的16S rDNA序列有99%?100%的同源性,而且与鲍曼氏不动杆菌KF714株(GenBank登录号:AB109775)的亲缘关系最近。菌株AQ-3去除亚硝酸盐的最适初始pH范围为7?9,最佳碳源为乙酸钠和丁二酸钠,而且随着初始菌浓度的不断增大,菌株AQ-3对亚硝酸盐的去除率显著升高;随着亚硝酸盐浓度的不断增大,菌株AQ-3对亚硝酸盐的去除率逐渐降低。【结论】在丰富亚硝酸盐去除菌种质资源的同时,为该菌在养殖水体中的实际应用提供了理论基础。     

一株光合细菌的分离鉴定及该菌对氨氮和亚硝态氮的去除作用

【背景】中国是水产养殖大国,氨氮、亚硝态氮是水体中主要的氮源污染物。水体氨氮超标不仅会损伤水生动物的神经系统和肝肾系统,还会导致体表及内脏充血。亚硝态氮过高会阻碍血液运载氧气能力,导致鱼虾缺氧、免疫力下降,从而引发肠炎、烂鳃,甚至窒息死亡。部分光合细菌有去除水体氨氮、亚硝态氮的能力,且对环境友好无二次污染。【目的】从广东养殖水体分离、纯化、筛选出生物活性好的光合细菌(编号SP3)进行种属鉴定,优化培养条件,检测其去除水体氨氮和亚硝态氮的能力,为养殖水体去除氨氮和亚硝态氮提供目标菌株。【方法】用双层平板法从混合菌液中分离得到光合细菌,通过革兰氏染色、碳源利用试验、对无机电子供体的利用试验以及16SrRNA基因序列分析对目标菌株进行种属鉴定;测定菌株SP3在不同pH、不同浓度NaCl条件下的OD600,优化培养条件;通过测定7d内SP3菌株在不同浓度氨氮(氯化铵配制)和亚硝态氮(亚硝酸钠配制)中OD600的变化趋势,确定该菌株对不同氮源的利用情况;用纳氏比色法、分光光度法测定SP3菌株降解水体氨氮和亚硝态氮的能力。Genome walking扩增获得亚硝酸盐还原酶基因(nirS),通过荧光定量PCR研究nirS在氨氮、亚硝态氮去除过程中的表达动态。【结果】筛选出的菌株SP3为革兰氏阴性菌,短杆状;能以醋酸盐、丙酮酸盐、丙酸盐、丁酸盐、乳酸盐、富马酸盐、琥珀酸盐、苹果酸、果糖、葡萄糖作为碳源,不能以乙醇和丙酮作为碳源;能利用硫化钠、硫代硫酸钠、亚硫酸钠作为无机电子供体; 16SrRNA基因序列分析表明其与沙氏外硫红螺菌(Ectothiorhodospira shaposhnikovii)序列相似度为99%;菌株SP3适宜pH为6.0-8.5,适宜盐度为0-3%;菌株SP3以铵盐作为氮源时生长状态明显优于亚硝酸盐;以初始菌液浓度8.6×109CFU/mL、起始氨氮量84.15±0.58 mg/L的条件培养7 d,水体氨氮累计去除量为79.45±0.29 mg/L,氨氮累计去除率达到94.42%;在同样菌浓度和2mg/L亚硝酸钠的条件下培养5d,水体亚硝态氮含量低于检测限0.003mg/L。在菌株SP3去除氨氮、亚硝态氮过程中nirS相对表达量上调。【结论】菌株SP3为沙氏外硫红螺菌(E.shaposhnikovii),能有效去除水中氨氮和亚硝态氮,具有净化水质作用,在水产养殖和污水处理中有广阔应用前景。     

一株产右旋糖苷酶海洋细菌的筛选鉴定

【目的】筛选鉴定产右旋糖苷酶的海洋细菌,并对其所产右旋糖苷酶的酶学性质及在变异链球菌牙菌斑生物膜中的应用进行初步研究。【方法】利用平板透明圈法从海洋环境中筛选产右旋糖苷酶的细菌,根据菌株形态特征、生理特征及16S rDNA序列确定其分类学地位,采用体外生物膜模型研究该酶对变异链球菌牙菌斑生物膜形成的抑制作用。【结果】从海泥中筛选出一株产右旋糖苷酶的细菌KQ11,初步鉴定为节杆菌(Arthrobacter sp.)。该菌株的最适生长温度为30°C,最适生长pH 7.5,最适生长NaCl浓度为0.4%。右旋糖苷酶的最适作用温度为45°C,最适作用pH为5.5。该酶能有效地抑制变异链球菌牙菌斑生物膜的形成。【结论】菌株KQ11右旋糖苷酶能够抑制变异链球菌牙菌斑生物膜的形成,可望用于漱口液等口腔护理产品中。     

固氮红细菌(Rhodobacter azotoformans) YLK20去除无机氮的影响因素

【背景】不产氧光合细菌(Anoxygenicphototrophicbacteria,APB)作为一类重要的微生物资源,在水产养殖水体氮污染的修复方面已有广泛研究与应用。养殖水体环境复杂,含多种有机物,尤其是有机氮显著影响菌体除氮功效。【目的】在高浓度无机三态氮(氨氮、硝氮和亚硝氮)共存体系中,阐明小分子有机碳、有机氮和盐度对固氮红细菌(Rhodobacter azotoformans) YLK20去除无机三态氮的影响规律及机制,挖掘针对性强和适应性广的高效除氮菌株。【方法】采用RAST和KEGG方法分析YLK20基因组碳氮代谢途径及耐盐机制;采用次溴酸钠氧化法、紫外和N-(1-萘基)-乙二胺分光光度法分别测定氨氮、硝氮和亚硝氮含量。【结果】基因组显示,YLK20拥有EMP、HMP、TCA、固氮、氨化、氨同化和反硝化碳氮代谢途径,含有soh B、nha C、bet B和gbs A等多种耐盐基因。丙酮酸钠、乙酸钠、柠檬酸钠、乙醇和甘露醇是YLK20生长和去除无机三态氮的良好有机碳,葡萄糖和果糖的存在降低了无机三态氮去除能力,蔗糖体系中硝氮和亚硝氮能被良好去除,但氨氮去除能力较低。在高浓度蛋白胨(3.21 g/L)和尿素(1.43 g/L)体系中,YLK20仍能高效去除无机三态氮。YLK20能在3%盐度内生长良好,低盐度时该菌株能良好去除无机三态氮,高盐度时亚硝氮去除能力受到严重抑制。YLK20对海水和淡水实际养殖水体中的无机三态氮有良好去除效果。【结论】YLK20主要通过氨同化和反硝化途径去除无机三态氮,尤其在高浓度有机氮环境中也能高效去除;该菌株适应盐度范围广,兼可适用于淡水和海水养殖水体;该菌株生长和无机三态氮去除影响因素、规律及除氮机制的阐明,可为APB微生物制剂的合理应用提供指导。     

一株红假单胞菌的分离及对Cu2+的去除

【背景】重金属污染对环境和人类的健康构成了重大威胁,因此,重金属污染的治理迫在眉睫。生物治理因成本低、处理效果好和无二次污染等优点,在处理重金属污染时被优先选择。【目的】从辽河入海口深13 m的水体中,利用紫色非硫细菌富集培养基筛选产色素能力强并对高浓度Cu~(2+)有高效去除能力的菌株。【方法】采用形态学、生理生化特性和分子生物学方法鉴定菌种;采用二乙基二硫代氨基甲酸钠分光光度法测定Cu~(2+)的含量。【结果】鉴定菌株为红假单胞菌属,将其命名为Rhodopseudomonas sp. gh32。菌株gh32的最适生长温度和最适pH分别为30°C和7.0,其在pH 5.0-10.0范围内可正常生长,在3 mmol/L的CuSO4溶液中能够正常生长,能利用葡萄糖、甘露糖和果糖等单糖和硫化氢。菌株gh32在24h内对Cu~(2+)的去除率均在99%以上,处理能力为1 331 g/g干菌重或167.6 g/g湿菌重。【结论】菌株gh32对Cu~(2+)具有较强的耐受性和很好的去除效果,是治理含Cu~(2+)废水的潜力菌株。本研究为生物治理重金属废水提供了支持。     

水质净化酵母菌的分离筛选及鉴定

摘要:【目的】针对目前水产养殖专用优良菌种资源缺乏的现状,从养殖环境和养殖生物体中分离筛选具有水质净化功能的酵母菌,并对优良菌株进行鉴定。【方法】在低温和常温条件下从皮皮虾、南美白对虾肠道及养殖池底质活性污泥中分离具有水质净化功能的酵母菌,在模拟水体中对分离菌株的水质净化能力进行筛选,并对优良菌株采用形态、生理生化实验及5.8S rDNA ITS序列分析进行鉴定。【结果】从3种介质中共分离到酵母菌37株,其中常温分离16株,低温分离21株。水质净化实验结果表明,常温分离的16株酵母菌中有5株,低温分离的21株酵母菌中有6株对模拟水体中亚硝态氮和氨氮有显著的去除效果;其中低温分离的DN9和常温分离的CN6 48h能将10.64mg/L的亚硝态氮彻底转化,96h对630mg/L CODcr的去除率分别达52%和67%。DN9和CN6均产红色色素,经形态特征、生理生化特性及5.8S rDNA基因序列分析,鉴定菌株CN6为沼泽生红冬胞酵母(Rhodosporidium paludigenum),DN9为胶红酵母(Rhodotorula mucilaginosa)。【结论】红酵母DN9和CN6能有效去除养殖水体中的有机污染物和亚硝态氮,有望开发成 水产养殖水质净化高效微生态制剂。     

一株分离自高海拔土壤的梭菌的鉴定及代谢产物

【目的】了解土壤环境中细菌的生理生化特性及代谢产物。【方法】采用厌氧操作技术从西藏纳木错分离到一株厌氧梭状芽孢杆菌P4-1。采用生理生化鉴定结合16SrDNA序列的系统发育学分析确定该菌株的系统发育地位,用气相色谱分析其代谢产物【结果】菌株P4-1为严格厌氧革兰氏阳性菌,菌体大小为0.3μm×1μm-3μm,单生或成对生长,产生芽孢。生长温度范围是13-40℃(最适温度37℃);NaCl浓度0%-5%(最适为0.5%-1%);pH范围5.0-10.0(最适生长pH为7.5-8.0)。能够利用葡萄糖、密二糖、甘露糖醇等多种碳水化合物,发酵葡萄糖的产物是乙酸,丙酸,丁酸,CO2,H2。菌株P4-1的(G+C)mol%含为30.9%,与Clostridium lituseburense DSM797(M59107)的相似性达98.7%。菌株P4-1能够降解对甲苯磺酸盐,并且在有酵母粉的情况下能明显提高其降解能力【结论】菌株P4-1是从土壤中分离出的一株耐低温,耐盐的厌氧菌,其发酵葡萄糖产生的代谢产物有利于改善土壤中的微环境,而且能够降解对甲苯磺酸盐,在废水处理中有重要意义。     

一株菊酯类农药降解菌的分离鉴定及其降解酶基因的克隆

摘要：【目的】筛选分离高效降解菊酯类农药的光合细菌,研究其降解特性,并对该菌株中降解酶基因进行克隆与初步分析。【方法】根据分离菌株的细胞形态结构、活细胞光吸收特征、生理生化特征及其16S rDNA序列系统发育分析鉴定降解菌,气相色谱法测定该菌株降解菊酯类农药的能力,PCR方法克隆降解酶基因。【结果】菌株PSB07-21属红假单胞菌属（Rhodopseudomonas sp.）,其降解最佳条件为3000 lx、35℃、pH 7,在此条件下培养15 d对600 mg/L甲氰菊酯、氯氰菊酯、联苯菊酯降解率分别为     

红假单胞菌去除养鱼废水三态氮及COD的研究

利用红假单胞菌(Rhodopseudomonas sp.)wps对鲫鱼养殖废水三态氮及COD进行处理.菌株wps对水体亚硝氮的去除率随菌浓的降低而降低,当添加菌液量降到0.4 mL(终浓度约为5×10⁴cell·mL^-1)时,其对亚硝氮的去除效果已不明显,但同时投加400μg碳源明显提高其亚硝氮去除率,高出对照20.06%;菌株wps对氨氮也有一定去除效果,但碳源的添加对氨氮的去除影响更大;同时施加0.4 mL wps菌液和40μg碳源对硝氮和COD的去除率分别比对照提高20.51%和22.03%.光照与否对其处理养鱼废水的效果影响不大.PCR-DGGE结果分析显示,菌株wps在与土著光合细菌的竞争中处于劣势.     

腾冲热海七株高温厌氧菌的分离及鉴定

摘要：【目的】了解中国云南腾冲热海环境中厌氧菌的分类学特征及生理生化特性。【方法】利用Hungate厌氧操作技术,从云南腾冲热海80-93℃温泉中分离出7株高温厌氧菌,对其进行形态、生长特征及16S rRNA基因序列分析,确定菌株的系统发育地位。【结果】7株菌株细胞形态均为杆状,不产芽孢,革兰氏阴性,严格厌氧,在70℃生长良好。其中较典型的菌株RH0802能在55-80℃温度范围内生长,最适生长温度为70℃;生长pH值范围为5.5-8.5,最适pH值为7.0,能利用葡萄糖、淀粉、甘露醇、甘露糖、核糖、麦芽糖、纤维二糖、木糖、果糖、半乳糖、木聚糖、甘油,不能利用蔗糖、丙酮酸。16S rRNA基因序列相似性的比较分析表明,其中5株菌与Caldanaerobacter属菌株的最高相似性均在98%以上,而RH0804与RH0806分别为96%和93%。菌株RH0802-RH0808的序列登录号分别为FJ748766、FJ748762、FJ748761、FJ748763、FJ748765、FJ748764和FJ748767,在中国普通微生物菌种保藏中心的保藏号分别为CGMCC1.5134-1.5140。【结论】分离自腾冲热海的7株嗜热厌氧菌与Caldanaerobacter属菌株有较高相似性,可将这7株菌株鉴定为Caldanaerobacter属菌株（Caldanaerobacter. sp）,其中菌株RH0804和RH0806有成为新种的可能。     

Selective enrichment of green sulfur bacteria in the presence of 4-aminobenzenesulfonate (sulfanilate)

A novel selective enrichment method is described for phototrophic green sulfur bacteria even in the presence of purple sulfur and purple nonsulfur bacteria using sulfanilate, which was discovered during efforts to selectively isolate sulfanilate-metabolizing anoxygenic phototrophic bacteria from marine habitats. Samples for these experiments were obtained from beaches, saltpans, subsurface mangrove soils, fish and prawn aquaculture ponds and backwaters of the East and West coasts of India. Photoorganoheterotrophic and photolithoautotrophic enrichments in the absence of sulfanilate predominantly yielded purple bacterial enrichments. In contrast, photolithoautotrophic enrichments in the presence of sulfanilate yielded green-colored enrichments from the same samples. Whole cell absorption spectra of the enrichment cultures revealed the presence of bacteriochlorophyll c and thus green phototrophic bacteria. Microscopic observation demonstrated the presence of sulfur globules outside the bacterial cells and the presence of non-motile cells, some of which had prosthecae. 16S rDNA sequences obtained from green sulfur bacterial strains isolated from enrichment cultures confirmed the presence of representatives of the green sulfur bacterial genera Prosthecochloris and Chlorobaculum. The selective pressure of sulfanilate exerted through inhibition of phototrophic purple sulfur bacteria was demonstrated by inhibition studies using the purple sulfur bacteria Marichromatium indicum JA100 and Marichromatium sp. JA120 (JCM 13533) and the green sulfur bacterium Prosthecochloris sp. JAGS6 (JCM 13299).     

Characterization of new phototrophic heliobacteria and their habitats

Specific enrichment culture methods were used to isolate new phototrophic heliobacteria (anoxygenic phototrophic bacteria containing bacteriochlorophyll g) from various natural samples. A survey of terrestrial and aquatic habitats yielded heliobacteria only from soils, in particular rice soils, and from certain hot springs. Thirteen nonthermophilic and 7 thermophilic (capable of growth above 50) strains of heliobacteria were isolated from such habitats and characterized as to their basic cellular and nutritional properties. Phylogenetic studies of four strains showed them to be related to known species of heliobacteria. It is concluded that, unlike phototrophic purple and green bacteria, heliobacteria are primarily (if not exclusively) terrestrial, except for hot spring species. This suggests that the ecology of heliobacteria is fundamentally different from that of other anoxyphototrophs.     

Development of a real-time PCR method for the detection of fossil 16S rDNA fragments of phototrophic sulfur bacteria in the sediments of Lake Cadagno

Lake Cadagno is a crenogenic meromictic lake situated in the southern range of the Swiss Alps characterized by a compact chemocline that has been the object of many ecological studies. The population dynamics of phototrophic sulfur bacteria in the chemocline has been monitored since 1994 with molecular methods such as 16S rRNA gene clone library analysis. To reconstruct paleo-microbial community dynamics, we developed a quantitative real-time PCR methodology for specific detection of 16S rRNA gene sequences of purple and green sulfur bacteria populations from sediment samples. We detected fossil 16S rDNA of nine populations of phototrophic sulfur bacteria down to 9-m sediment depth, corresponding to about 9500 years of the lake's biogeological history. These results provide the first evidence for the presence of 16S rDNA of anoxygenic phototrophic bacteria in Holocene sediments of an alpine meromictic lake and indicate that the water column stratification and the bacterial plume were already present in Lake Cadagno thousands of years ago. The finding of Chlorobium clathratiforme remains in all the samples analyzed shows that this population, identified in the water column only in 2001, was already a part of the lake's biota in the past.     

含好氧不产氧光合基因簇和Xanthorhodopsin-like基因的Sphingomonas sp. MIM37：基因组及光促生长分析

【目的】菌株MIM37为具有两种光能利用途径的光合异养细菌,分析其基因组和光照对生长的影响,为理解光能利用途径、光营养生物多样性以及光合作用的进化和功能等提供线索。【方法】采用平板涂布划线法分离菌株,结合形态观察及16S rRNA基因和光合基因序列同源性与系统发育分析进行初步分类鉴定;以分光光度法和荧光显微观察法测定光照和黑暗培养下培养液细胞浓度和单细胞体积;构建片段长度为300?500 bp的Illumina PE文库,以Illumina Hiseq2000进行基因组测序,以SOAPdenovo和GapCloser组装序列,以RAST在线软件注释基因组。【结果】从内蒙古腾格里沙漠天鹅湖表层水中分离获得一株细菌MIM37,经16S rRNA基因、pufM和视紫质基因同源性和系统发育分析均显示其与Sphingomonas属亲缘关系最为密切;相对黑暗培养,光照刺激下的最大细胞浓度和单细胞体积大小分别提高了1.2和5.6倍;基因组注释显示MIM37代谢途径多样,含典型好氧菌的呼吸电子传递链,具有完整的好氧不产氧细菌的光合基因簇及xanthorhodopsin-like视紫质蛋白基因,合成铁载体,还原重金属,降解微囊藻毒素和多环芳烃类等。【结论】MIM37属于Sphingomonas属,具有两种光能利用途径,光照可明显促进其生长,多样的代谢模式可能使其在自然环境中极具竞争力、分布广泛并具有应用于修复环境污染的潜力。     

Community Shift from Phototrophic to Chemotrophic Sulfide Oxidation following Anoxic Holomixis in a Stratified Seawater Lake

Most stratified sulfidic holomictic lakes become oxygenated after annual turnover. In contrast, Lake Rogoznica, on the eastern Adriatic coast, has been observed to undergo a period of water column anoxia after water layer mixing and establishment of holomictic conditions. Although Lake Rogoznica''s chemistry and hydrography have been studied extensively, it is unclear how the microbial communities typically inhabiting the oxic epilimnion and a sulfidic hypolimnion respond to such a drastic shift in redox conditions. We investigated the impact of anoxic holomixis on microbial diversity and microbially mediated sulfur cycling in Lake Rogoznica with an array of culture-independent microbiological methods. Our data suggest a tight coupling between the lake''s chemistry and occurring microorganisms. During stratification, anoxygenic phototrophic sulfur bacteria were dominant at the chemocline and in the hypolimnion. After an anoxic mixing event, the anoxygenic phototrophic sulfur bacteria entirely disappeared, and the homogeneous, anoxic water column was dominated by a bloom of gammaproteobacterial sulfur oxidizers related to the GSO/SUP05 clade. This study is the first report of a community shift from phototrophic to chemotrophic sulfide oxidizers as a response to anoxic holomictic conditions in a seasonally stratified seawater lake.     

Biodegradation of tri- and perchloroethylene in sewage waters and soils by a microbial consortium of compost and phototrophic bacteria

Compost and phototrophic bacteria are found to be able to degrade trichloroethylene (TCE) and perchloroethylene (PCE). With a TCE dose increase by more than 10 mg/kg, the TCE degradation decreases due to the toxic effect of this pollutant on microbial consortium activity. The addition of compost combined with a liquid culture of phototrophic bacteria (PTB) is experimentally proved to effectively decrease the TCE content in soil and water.     

Phototrophic plankton of siderotrophic meromictic Lake Kuznechikha (Republic Mari El,Russia)

During summer thermal stratification, a broad transition zone with hypoxic conditions is formed in meromictic ferruginous Lake Kuznechikha between the thermocline and the main gradient of water mineralization. In this zone, the chemical composition of water undergoes an ecologically significant transformation due to overlapping gradients of nutrient concentrations and redox conditions. We present an analysis of a strongly vertically structured community of prokaryotic and eukaryotic phototrophs developing in the lake as a whole and especially in the transition zone. In early summer 2009, a sequence of phototrophic organisms with depth in order Chlorophyceae → Chromatiales → Chloroflexales → Euglenales → Chlorobiales was observed in the transition zone, while cyanobacteria were almost completely absent. Biomass maximum of anoxygenic phototrophic bacteria was located between the peaks of phototrophic picoplankton and euglenoids. Such a coexistence of oxygenic and anoxygenic phototrophs in a wide range of depths is highly unusual and sharply distinguishes Lake Kuznechikha from waterbodies with sulphide-containing monimolimnion.