Animal v. plant‐based bait: does the bait type affect census of fish assemblages and trophic groups by baited remote underwater video (BRUV) systems?

Coral reef fish communities were sampled at the Nayband Marine Park, Iran, using baited remote underwater video stations (BRUVSs) which incorporated animal (i.e. frigate tuna Auxis thazard and beef liver), or plant‐based baits (i.e. raw dough and raw dough‐turmeric powder mix). The A. thazard was found to record significantly (P < 0·05) higher species richness and number of carnivorous fishes than plant‐based baits, while abundance of herbivores was maximum in raw dough‐turmeric powder mix trials. There was also a significant difference in trophic composition of fish assemblages surveyed by animal‐ and plant‐based baits which seemed to be due to variations in attraction patterns of carnivores and herbivores occurring at the earlier phases of each BRUV deployments. Meanwhile, the assemblage structure was comparable among fish assemblages sampled by different bait treatments, indicating that species‐level responses to each bait type may be more complicated. In essence, the efficiency of mixed baits should also be examined in future studies.     

Does the impact of nutrients on the biological structure and function of brackish and freshwater lakes differ?

The effects of nutrients on the biological structure of brackish and freshwater lakes were compared. Quantitative analysis of late summer fish, zooplankton, mysid and macrophyte populations was undertaken in 20–36 shallow brackish lakes of various trophic states and the findings compared with a similar analysis of shallow freshwater lakes based on either sampling (fish) or existing data (zooplankton, mysids and macrophytes). Special emphasis was placed on differences in pelagic top-down control. Whereas the fish biomass (CPUE, multiple mesh-size gill nets) rose with increasing P-concentration in freshwater lakes, that of brackish lakes was markedly reduced at P-concentrations above ca. 0.4 mg P l^-1 and there was a concomitant shift to exclusive dominance by the small sticklebacks (Gasterosteus aculeatus and Pungitius pungitius); as a result, fish density remained relatively high. Mysids (Neomysis integer) were found at a salinity greater than 0.5 and increased substantially with increasing P-concentration, reaching levels as high as 13 ind. l^-1. This is in contrast to the carnivorous zooplankton of freshwater lakes, which are most abundant at intermediate P levels. The efficient algal controller, Daphnia was only found at a salinity below 2 and N. integer in lakes with a salinity above 0.5. Above 2 the filter-feeding zooplankton were usually dominated by the less efficient algal controllers Eurytemora and Acartia. In contrast to freshwater lakes, no shift to a clearwater state was found in eutrophic brackish lakes when submerged macrophytes became abundant. We conclude that predation pressure on zooplankton is higher and algal grazing capacity lower in brackish eutrophic-hypertrophic lakes than in comparable freshwater lakes, and that the differences in trophic structure of brackish and freshwater lakes have major implications for the measures available to reduce the recovery period following a reduction in nutrient loading. From the point of view of top-down control, the salinity threshold dividing freshwater and brackish lakes is much lower than the conventionally defined 5.     

Control of freshwater fish and crayfish community structure in Taranaki,New Zealand: dams,diadromy or habitat structure?

1. Freshwater fish and crayfish communities were surveyed along elevational gradients in streams radiating from Mount Taranaki, New Zealand. Six of the 38 streams surveyed had dams or weirs and 32 of the 85 sites were above these barriers. 2. Of the 15 fish and one crayfish species captured, 14 were native. The number of species declined with increasing elevation and distance from the sea. Species richness was also lower above dams even when effects of elevation and distance from the sea were accounted for. 3. Linear regression models using sites without dams were constructed to predict the effect of elevation on fish and crayfish community structure and to allow the effect of dams to be evaluated. The number of species predicted by these models was consistently higher than the number of species found at the above-dam sites. 4. Four fish community groups were classified using two-way indicator species analysis (TWINSPAN). One high elevation group of sites consisted of short steep streams on the west side of the mountain and a second contained longer, lower gradient streams on the east side. The other two groups (3 and 4) consisted of mid-elevation sites and low-elevation sites, respectively. 5. Discriminant analysis was used to predict biotic group membership using the environmental data. Overall, 80% of sites were classified correctly. Correlation of environmental variables with axis scores in the canonical variate analysis revealed that distance from the sea, site elevation and presence of dams were most strongly associated with fish distribution patterns.     

Does fuel type influence the amount of charcoal produced in wildfires? Implications for the fossil record

Charcoal occurrence is extensively used as a tool for understanding wildfires over geological timescales. Yet, the fossil charcoal literature to date rarely considers that fire alone is capable of creating a bias in the abundance and nature of charcoal it creates, before it even becomes incorporated into the fossil record. In this study we have used state‐of‐the‐art calorimetry to experimentally produce charcoal from 20 species that represent a range of surface fuels and growth habits, as a preliminary step towards assessing whether different fuel types (and plant organs) are equally likely to remain as charcoal post‐fire. We observe that charcoal production appears to be species specific, and is related to the intrinsic physical and chemical properties of a given fuel. Our observations therefore suggest that some taxa are likely to be overrepresented in fossil charcoal assemblages (i.e. needle‐shed conifers, tree ferns) and others poorly represented, or not preserved at all (i.e. broad shoot‐shed conifers, weedy angiosperms, shrub angiosperms, some ferns). Our study highlights the complexity of charcoal production in modern fuels and we consider what a bias in charcoal production may mean for our understanding of palaeowildfires.     

Does the size of small objects influence chemical reactivity in living systems?

Previous theoretical works showed that chemical reactions in micro- and nano-droplets, bubbles and solid particles were strongly affected by their confinement. In particular, the smallness of the systems leads to high internal pressure compared to the external pressure, which then significantly modifies the values of chemical equilibrium and kinetic constants. In addition, surface tension or surface stress, reactional dilatation and surface charge play also a major role on the chemical reactivity. As living systems are also made of very complex dispersed subsystems, i.e. organelles, it seemed obvious to illustrate our theory by some biological actual examples encountered in pulmonary alveolae, in vacuolae and in medical applications, such as dissolution of gallstones.     

Does green light influence the fluorescence properties and structure of phototrophic biofilms?

Artificial illumination can harm works of art by inducing the development of photosynthetic biofilms. With the aim of preventing biodeterioration or esthetic damage to such surfaces, we evaluated and compared the effects of illuminating biofilms formed by Gloeothece membranacea (cyanobacteria) and Chlorella sorokiniana (Chlorophyta) using exclusively white or green light.     

Does the process of drying submerged macrophytes affect community structure and composition of epiphytic diatoms?

This study investigates whether the process of pressing and drying a macrophyte host affects community structure and composition of epiphytic diatom communities. Epiphytic diatoms on submerged macrophytes from carbonate rivers and streams in southern Bavaria, Germany were sampled in order to study community structure and composition. Simultaneously, a specimen of the submerged macrophyte was taken to create a collection of dried plants. After 6months of preservation, diatom samples were taken from the herbarium macrophytes. Detrended correspondence analysis, diversity and evenness results indicate that recent and dried communities are indistinguishable. These results suggest that epiphytic diatom communities sampled from historic herbarium macrophytes can be utilised as bioindicators to assess former water quality.     

Do human disturbance variables influence more on fish community structure and function than natural variables in the Wei River basin,China?

Quantifying how human disturbance affects biotic communities in the context of other natural and spatial factors is a vital precursor to develop environmental management strategies to effectively conserve and restore ecosystem. This is particularly so for freshwater ecosystems in heavily populated and increasingly disturbed regions such as the Wei River basin in north-west China. In this paper, we employed both species’ abundance and functional metrics (displaying species diversity, habitat, trophic level, tolerance and abundance) to quantify the effect of human disturbance using canonical correspondence analysis. The results showed that spatial, natural and human disturbance variables can explain 40.1% and 33.7% of the total variation in fish abundance without rare species and with all species, respectively. 37.1% and 37.9% variation can be explained in fish metrics without rare species and with all species. Human disturbance variables explained most of the total variations in the four fish matrices. Inclusion or exclusion of rare species will influence the total explained variation from three factors in fish metrics, but little in fish abundance. Rare species will highlight this relationship with human disturbance gradient. For fish metrics, removing rare species will reflect some wrong information for human disturbance gradient. We recommend to include rare species for fish metrics to assess the impact of environment.     

Does diversity influence soil nitrate,light availability and productivity in the establishment phase of Australian temperate grassland reconstruction?

Summary The successful conservation and restoration of the temperate native grasslands of south‐eastern Australia is critical to reversing the decline in range and diversity of these threatened plant communities. Yet the goals of high native species diversity and weed management are difficult to achieve in grassland restoration projects. To increase our understanding of whether synergies exist between these goals (i.e. whether early introduction of a larger number of species might improve both outcomes in the reassembly of native grassland), we examined the relationships between plant species number, functional group number and resource use during the establishment phase of direct‐sown grassland. We did this by sowing a representative suite of species (at varying levels of species number and functional group number) into experimental plots and then measuring and analysing the extent to which the newly established assemblages captured available resources, i.e. used soil nitrate, absorbed light and produced biomass (vegetative cover). Statistically significant correlations were common between the predictor variables (species number, functional group number, percentage vegetative cover, plant number, presence of idiosyncratic (dominating) species) and responses (soil nitrate concentration, light reduction or ‘extinction’). Higher diversity was associated with lower soil nitrate, while percentage vegetative cover and the presence of idiosyncratic species best predicted light extinction. The relationship between diversity, and plant biomass (measured as vegetative cover) and plant number was positive in the first year of the study. The diversity/biomass relationship became negative in the second year due to the higher numbers and cover of ‘idiosyncratic’ species. The diversity/plant number relationship also became negative in the autumn of the second year and was reduced to a trend by the winter. We found that lower nitrate and increasing plant numbers and vegetative cover were most strongly linked to increasing species number in the early stages of this study. This suggests that introducing and maintaining high diversity early in a native grassland reassembly or enhancement project will improve the resistance (e.g. to weed) of these communities. At later stages of grassland development, this function may be provided by the more dominating idiosyncratic species. The maintenance of diversity, an important goal in its own right, will therefore necessitate managed disturbances to periodically reduce the vegetative dominance of idiosyncratic species, releasing resources for the diverse range of other species whose early introduction will have allowed them to persist in the soil seed bank or as suppressed rootstocks.     

Does nest predation pressure influence the energetic cost of nest guarding in a teleost fish?

The energetic costs of providing parental care are widely documented, but rarely do studies consider the role of environmental variation (e.g., predation pressure) in this context. Here, we tested if variation in nest predation pressure influenced the energetic costs of parental care in smallmouth bass (Micropterus dolomieu), a teleost fish species that provides lengthy paternal care. First, we documented that nest predation pressure varied among the six lakes studied and the relative predation pressure ranking was consistent across a three year period. We used a combination of traditional proximate body composition (PBC) analyses and electromyogram (EMG) telemetry to quantify activity costs of nesting fish across these populations. The traditional approach revealed declines in energy stores across the parental care period but showed no evidence of an increased energetic cost to parents from populations with higher nest predation pressure. Comparing the distribution of EMG data from the two extremes of predation pressure revealed that males from the site of highest predation spent more time at higher EMG levels relative to the parents from the lake of lowest predation pressure. Although not statistically significant, males from the site of highest predation pressure also spent 21?C24?% of their time burst swimming when guarding young offspring compared to 10?C11?% for males at the site of lowest predation pressure. These differences in overall activity, a large contributor to the energy use of fish, may translate into longer recovery times and decreased future reproductive opportunities.     

Do freshwater ecoregions and continental shelf width predict patterns of historical gene flow in the freshwater fish Poecilia butleri?

We examined historical patterns of gene flow in the freshwater fish Poecilia butleri in western Mexico. We tested the hypothesis that the boundaries between four freshwater ecological communities (ecoregions) might have limited the movement of P. butleri because changes in species compositions might restrict establishment between adjacent ecoregions, even in situations where a physical barrier is absent. Hence, we predicted that boundaries between ecoregions should correspond to phylogeographical breaks in P. butleri. We also tested the hypothesis that the width of the continental shelf affected historical gene flow in P. butleri because a broad continental shelf provides a greater opportunity for rivers to coalesce during historical episodes of low sea levels as opposed to a narrow continental shelf that should restrict the potential for gene flow among adjacent rivers. Hence, we predicted greater amounts of historical gene flow among neighbouring river basins in the region of western Mexico where the continental shelf is wider, whereas, in the region where the continental shelf is narrower, we expected to detect limited levels of historical gene flow. We analyzed mitochondrial DNA sequence data (cytochrome b) taken from 264 individuals of P. butleri collected from 34 locations distributed across four different ecoregions in western Mexico. To examine patterns of phylogenetic diversification and historical gene flow in P. butleri, we employed several analytical approaches, including traditional tree‐based phylogenetic analyses (likelihood and parsimony), haplotype network reconstruction, analyses of molecular variance, and spatial analysis of molecular variance. We found genetic breaks coinciding with two out of three different ecoregion boundaries, suggesting limited historical gene flow. In addition to different species compositions between these adjacent ecoregions, geological features such as the Trans‐Mexican Volcanic Belt and the mountainous topography in south‐western Mexico, likely contributed to these observed genetic breaks. By contrast, no genetic break was evident between two other ecoregions, a result that partially rejects our first hypothesis. Several results were consistent with our second hypothesis. Changes in the width of the continental shelf in western Mexico are associated with the observed patterns of historical gene flow. Our results indicate that the interactions among multiple geological and biological factors affect the spatial patterns of genetic diversity of widespread freshwater species. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 112 , 399–416.     

Variation in fish community structure, richness, and diversity in 56 Danish lakes with contrasting depth, size, and trophic state: does the method matter?

Organisms inhabiting shallow near-shore waters are at risk of desiccation during water level fluctuations. Using laboratory experiments, we investigated the survival and behavioural defences of four freshwater amphipod species during substratum drying: three Ponto-Caspian invaders (Pontogammarus robustoides, Dikerogammarus haemobaphes and Dikerogammarus villosus) and the native Gammarus fossarum. We hypothesized that they would be able to survive air exposure events as well as to adjust their behaviour by following the decreasing water level and/or burying in the sediments. To test these hypotheses, we examined survival of each species on gradually drying sandy substratum as well as their horizontal and vertical migration behaviours. P. robustoides was most resistant to substratum drying and was the only species burying into the substratum. On the other hand, G. fossarum exhibited distinct horizontal migrations following the retreating waterline. These two species seem to be particularly well adapted to the drying environment. Defence mechanisms of D. haemobaphes and D. villosus were less efficient, though the former species also followed the retreating waterline to some extent. Our study demonstrates that exotic and native gammarids have several adaptations that enable them to invade and persist in habitats experiencing common water level fluctuations.     

Does the width of isolated ravine forests influence moss and liverwort diversity and composition?—A study of temperate forests in South Africa

The evidence of microclimatic edge effects through forest/open area ecotones is firm. How this affects the species composition near edges is less well understood and documented. In south-western South Africa shrub-dominated regularly burnt vegetation (i.e. fynbos) is the most common vegetation with indigenous temperate forests naturally occurring mostly in ravines on mountain slopes. The size and width of these forest patches varies considerably. In order to understand how the width of forest patches affects species composition of mosses and liverworts we investigated 20 forest patches of different width. In each forest patch we compiled a total species list, and collected data on selected environmental variables, for a plot of 10×20 m. No significant relationship was found between patch width and the number of either moss or liverwort species. However, the species composition of mosses (but not liverworts) changed along the gradient of patch width. The variation in number of species was large (8–29 mosses and 11–33 liverworts) among the plots and we propose that factors other than distance to the forest edge may be more important in structuring the bryophyte community of these ravine forests. One such factor that is likely to be important is the climatic difference among the plots. There is variation in features, such as precipitation, summer temperature, cloudiness, and the amount of fog, for which we do not have data but that could overrule the microclimatic differences due to edge effects.     

Is the future female for turtles? Climate change and wetland configuration predict sex ratios of a freshwater species

Climate change and land-use change are leading drivers of biodiversity decline, affecting demographic parameters that are important for population persistence. For example, scientists have speculated for decades that climate change may skew adult sex ratios in taxa that express temperature-dependent sex determination (TSD), but limited evidence exists that this phenomenon is occurring in natural settings. For species that are vulnerable to anthropogenic land-use practices, differential mortality among sexes may also skew sex ratios. We sampled the spotted turtle (Clemmys guttata), a freshwater species with TSD, across a large portion of its geographic range (Florida to Maine), to assess the environmental factors influencing adult sex ratios. We present evidence that suggests recent climate change has potentially skewed the adult sex ratio of spotted turtles, with samples following a pattern of increased proportions of females concomitant with warming trends, but only within the warmer areas sampled. At intermediate temperatures, there was no relationship with climate, while in the cooler areas we found the opposite pattern, with samples becoming more male biased with increasing temperatures. These patterns might be explained in part by variation in relative adaptive capacity via phenotypic plasticity in nest site selection. Our findings also suggest that spotted turtles have a context-dependent and multi-scale relationship with land use. We observed a negative relationship between male proportion and the amount of crop cover (within 300 m) when wetlands were less spatially aggregated. However, when wetlands were aggregated, sex ratios remained consistent. This pattern may reflect sex-specific patterns in movement that render males more vulnerable to mortality from agricultural machinery and other threats. Our findings highlight the complexity of species' responses to both climate change and land use, and emphasize the role that landscape structure can play in shaping wildlife population demographics.     

Historical and ecological context, pattern and process, in the derivation of New Zealand?s freshwater fish fauna

This paper explores distribution patterns exhibited by New Zealand?s freshwater fish fauna, both fossil and extant, and seeks to clarify processes that have generated these patterns. Knowledge of a Miocene New Zealand terrestrial/freshwater fossil fauna is based substantially on lacustrine deposits in Central Otago. It reflects an ecologically very different fauna from that known today. Nothing is known of the Miocene fluvial fauna. Present-day patterns of distribution and diversity reflect a deep ecological dichotomy. About half the fauna is diadromous, and the habit of these species, of moving to and from the sea, provides them with great resilience in the face of major known landscape perturbations resulting from orogeny and land submergence, glaciation and volcanism. The diadromous species tend to be widespread throughout New Zealand. In contrast, non-diadromous species are more strictly confined to freshwater habitats, and a major means of spread relates to changes in directions and connections of stream flows. As a result, species are much less resilient, they exhibit complex patterns of sympatry, and their ranges are much more localised. Despite all elements in the fauna living across the same landscape in space and time, distribution patterns of the varying species groups display great differences in pattern.     

The significance of depth and substratum incline for the structure of a hard bottom sublittoral community in glacial Kongsfjorden (Svalbard, Arctic)—an underwater imagery approach

In order to reveal the structure of the sparsely known deeper sublittoral hard bottom communities of glacial Kongsfjorden, the macroepibenthos from six depth zones (30–200?m) was analysed. A total of 180 still images derived from 6-h video recorded at the Kongsfjordneset remotely operated vehicle station were assessed quantitatively. Overall 27 mainly suspension-feeding species/taxa were observed. Of these, two-thirds have an arcto-boreal distribution, while the remainder are cosmopolitan. The overall mean epibenthos abundance was 33 ind. m^?2 with maximum values at 150?m depth (97.9 ind. m^?2). The majority of the taxa inhabited the entire depth range. Encrusting red algae, an unidentified sponge and the sea anemone Urticina eques, characterized the assemblage of the shallow zone. The sea anemones Hormathia spp. were important below 30?m, the Serpulid polychaete Protula tubularia was characteristic for the community below 50?m and the demosponge Haliclona sp. was a key taxon between 100 and 200?m depth. Cluster analysis and non-metrical multidimensional scaling based on abundance data showed differences between the assemblages along the bathymetric gradient, but only in the shallower depths in relation to the substratum surface incline. As surface and tidal current impacts attenuate with increasing depth, there is a gradual trend from robust key species towards more fragile ones (i.e. P. tubularia), in line with the ‘Physical control hypothesis’.     

Incipient sympatric speciation in Midas cichlid fish from the youngest and one of the smallest crater lakes in Nicaragua due to differential use of the benthic and limnetic habitats?

Understanding how speciation can occur without geographic isolation remains a central objective in evolutionary biology. Generally, some form of disruptive selection and assortative mating are necessary for sympatric speciation to occur. Disruptive selection can arise from intraspecific competition for resources. If this competition leads to the differential use of habitats and variation in relevant traits is genetically determined, then assortative mating can be an automatic consequence (i.e., habitat isolation). In this study, we caught Midas cichlid fish from the limnetic (middle of the lake) and benthic (shore) habitats of Crater Lake Asososca Managua to test whether some of the necessary conditions for sympatric speciation due to intraspecific competition and habitat isolation are given. Lake As. Managua is very small (<900 m in diameter), extremely young (maximally 1245 years of age), and completely isolated. It is inhabited by, probably, only a single endemic species of Midas cichlids, Amphilophus tolteca. We found that fish from the limnetic habitat were more elongated than fish collected from the benthic habitat, as would be predicted from ecomorphological considerations. Stable isotope analyses confirmed that the former also exhibit a more limnetic lifestyle than the latter. Furthermore, split‐brood design experiments in the laboratory suggest that phenotypic plasticity is unlikely to explain much of the observed differences in body elongation that we observed in the field. Yet, neutral markers (microsatellites) did not reveal any genetic clustering in the population. Interestingly, demographic inferences based on RAD‐seq data suggest that the apparent lack of genetic differentiation at neutral markers could simply be due to a lack of time, as intraspecific competition may only have begun a few hundred generations ago.     

Does the setup of Monte Carlo simulations influence the calculated properties and effect of gold nanoparticles in radiation therapy?

PurposeTo investigate whether the dose-scoring process of Monte Carlo (MC) simulations of Gold nanoparticles (GNPs) in radiation therapy affects the results.MethodsThe GATE MC toolkit was used to simulate the irradiation of a water phantom containing a single solid or hollow GNP with 250 kVp and 6 MV photons. The dose was scored in 20 nm × 20 nm × 50 μm, 100 nm × 100 nm × 50 μm and 200 nm × 200 nm × 50 μm volumes using dose-scoring voxels of size 1 nm × 1 nm × 50 μm, 10 nm × 10 nm × 50 μm, 50 nm × 50 nm × 50 μm and 100 nm × 100 nm × 50 μm Εxcess dose depth-dose (EDDD) curves and lateral beam profiles were used to compare the dose-scoring voxels.ResultsIn a given volume, neither the EDDD curves nor the lateral beam profiles are affected by the size of the dose-scoring voxels, subject to noise and uncertainty. Certain features of the EDDD curves are clearly seen in larger volumes, but hidden within the uncertainty and noise levels in smaller volumes. For the lateral beam profiles, it is the larger volumes that result in misleading results and the smaller ones that give the expected results. However, the limited statistics result in asymmetries and skewness in the profiles.ConclusionFor a given volume, the dose curves are not affected by the size of the dose-scoring voxels. However, the voxel size may hide or reveal the finer structure of the dose curves and/or may result in misleading curves.     

Does the severity of non‐flow periods influence ecosystem structure and function of temporary streams? A mesocosm study

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