Comparison of mesozooplankton assemblages across quasi-synoptic oceanographic features on the north-western Iberian shelf break

The mesozooplankton community at the north-western Iberian shelf break was studied among adjacent oceanographic regimes (including upwelling, stratification and anticyclonic eddies) during 17 days in autumn 2009. Zooplankton sampling locations were determined in situ, after identifying the oceanographic regimes from CTD profiles performed over the continental shelf and upper slope. Zooplankton samples were sorted indentifying taxonomically the main zooplankton groups, from phylum to subclass. Copepods were the most abundant group (ind m^?3) in all stations, followed by appendicularians, doliolids and siphonophores. The mesozooplankton community was significantly different amongst oceanographic conditions. Meroplankton abundance was higher in upwelling stations; particularly lamellibranchia, polychaeta and bryozoan larvae abundance, and decreased from early to late upwelling conditions. Medusae and chaetognata were found exclusively under the latter oceanographic regime. However, dissimilarity between the oceanographic conditions was mostly based on the varying contribution of the four most common groups.     

Flow cytometry in oceanography 1989--1999: environmental challenges and research trends.

BACKGROUND: The present review is based on the identification of four major environmental crises that have been approached from a biological oceanographic viewpoint. These crises are the release of contaminants in near shore marine waters, the collapse of marine resources that were renewable until recently, the loss of biodiversity, and global climate change METHODS: The review examines the contribution of cytometry-based biological oceanography to the resolution of the four environmental crises. Using a database of 302 papers, flow cytometric (FCM) studies in biological oceanography over the 1989--1999 decade are examined. Future biological oceanographic applications of FCM are discussed. RESULTS: Most of the published FCM oceanographic studies focus on phytoplankton and bacterioplankton. Analysis of our 1989-1999 database shows the predominance of studies dedicated to phytoplankton (77%), followed by heterotrophic bacteria (21%). The latter progressively increased over the last decade, together with the improved understanding of the biogeochemical and trophic roles of marine bacteria. Most studies on these two microorganisms were conducted in vitro until 1996, after which the trend reversed in favor of in situ research. The most investigated areas were those with major international sampling efforts, related to the changing climate. Concerning environmental topics, 62% of papers on phytoplankton and bacterioplankton focused on the structure of microbial communities and fluxes (e.g., production, grazing); this provides the basis for biological oceanographic studies on resources and climate change. CONCLUSIONS: Future progress in the biological oceanographic use of FCM will likely fall into two categories, i.e., applications where FCM will be combined with the development of other methods and those where FCM will be the main analytical tool. It is expected that FCM and other cytometric approaches will improve the ability of biological oceanography to address the major environmental challenges that are confronting human societies.     

Isolation by oceanographic distance explains genetic structure for Macrocystis pyrifera in the Santa Barbara Channel

Ocean currents are expected to be the predominant environmental factor influencing the dispersal of planktonic larvae or spores; yet, their characterization as predictors of marine connectivity has been hindered by a lack of understanding of how best to use oceanographic data. We used a high-resolution oceanographic model output and Lagrangian particle simulations to derive oceanographic distances (hereafter called transport times) between sites studied for Macrocystis pyrifera genetic differentiation. We build upon the classical isolation-by-distance regression model by asking how much additional variability in genetic differentiation is explained when adding transport time as predictor. We explored the extent to which gene flow is dependent upon seasonal changes in ocean circulation. Because oceanographic transport between two sites is inherently asymmetric, we also compare the explanatory power of models using the minimum or the mean transport times. Finally, we compare the direction of connectivity as estimated by the oceanographic model and genetic assignment tests. We show that the minimum transport time had higher explanatory power than the mean transport time, revealing the importance of considering asymmetry in ocean currents when modelling gene flow. Genetic assignment tests were much less effective in determining asymmetry in gene flow. Summer-derived transport times, in particular for the month of June, which had the strongest current speed, greatest asymmetry and highest spore production, resulted in the best-fit model explaining twice the variability in genetic differentiation relative to models that use geographic distance or habitat continuity. The best overall model also included habitat continuity and explained 65% of the variation in genetic differentiation among sites.     

Antarctic, Sub-Antarctic and cold temperate echinoid database

This database includes spatial data of Antarctic, Sub-Antarctic and cold temperate echinoid distribution (Echinodermata: Echinoidea) collected during many oceanographic campaigns led in the Southern Hemisphere from 1872 to 2010. The dataset lists occurrence data of echinoid distribution south of 35°S latitude, together with information on taxonomy (from species to genus level), sampling sources (cruise ID, sampling dates, ship names) and sampling sites (geographic coordinates and depth). Echinoid occurrence data were compiled from the Antarctic Echinoid Database (David et al. 2005a), which integrates records from oceanographic cruises led in the Southern Ocean until 2003. This database has been upgraded to take into account data from oceanographic cruises led after 2003. The dataset now reaches a total of 6160 occurrence data that have been checked for systematics reliability and consistency. It constitutes today the most complete database on Antarctic and Sub-Antarctic echinoids.     

Parasite recruitment and oceanographic regime: evidence suggesting a relationship on a global scale

We here investigate the relationship between oceanographic processes and variability in parasite recruitment to host populations using existing data from host-parasite systems encountering differing hydrographic conditions. Combined epidemiological data obtained from both exploited fish and cephalopod populations indicate that variability in recruitment of parasite infracommunities tends to be associated with major current systems of the World's oceans. It appears that instability in water masses caused by physical perturbations (e.g. water mass convergence and turbulent mixing in upwelling systems) is associated with instability of trophic interactions over time, which in turn leads to a paucity of parasite communities in that area. The likely relationship between parasite recruitment and oceanographic regime should be extremely useful to the fishing industry and also as an indicator of ecosystem health.     

Meteorological and climatic variability influences anthropogenic microparticle content in the stomach of the European anchovy Engraulis encrasicolus

Hydrobiologia - Meteorological and climatic phenomena affect oceanographic characteristics and, consequently, anthropogenic microparticle aggregation. The same phenomena influence the ecology of...     

Oceanographic coupling across three trophic levels shapes source–sink dynamics in marine metacommunities

A central goal of metapopulation ecology is to determine which subpopulations have the greatest value to the larger metapopulation. That is, where are the ‘sources’ that are most essential to persistence? This question is especially relevant to benthic marine systems, where dispersal and recruitment are greatly affected by oceanographic processes. In a single‐species context, theoretical models typically identify ‘hotspots’ with high recruitment, especially high self‐recruitment, as having the highest value. However, the oceanographic forces affecting larval delivery of a given species may also influence the recruitment of that species’ predators, prey, and competitors.We present evidence from the Virgin Islands and Bahamas that oceanographic forces produce spatial coupling between the recruitment of planktivorous fishes, the recruitment of their predators, and the productivity of their zooplankton prey. We examined the consequences of this type of multi‐trophic coupling using a simple analytical population model and a multispecies numerical simulation model with parameter values based on the Virgin Islands system. In both analyses, strong coupling caused planktivores at the highest recruitment sites to experience higher mortality (a consequence of higher predator densities) but faster growth and higher fecundity (a consequence of higher zooplankton densities) than planktivores at low recruitment sites. As such, the relative strength of oceanographic coupling between the three trophic levels strongly determined whether a particular reef acted as a source or sink. In the simulation model, density‐dependent competition for zooplankton limited overall metapopulation biomass more severely than predation, so oceanographic coupling between planktivore larval supply and zooplankton productivity had a stronger effect on the metapopulation value of a patch. We argue that the potential for such tri‐trophic coupling should be incorporated into future metacommunity models and has considerable implications for the design and evaluation of marine reserves.     

Seascape drivers of Macrocystis pyrifera population genetic structure in the northeast Pacific

At small spatial and temporal scales, genetic differentiation is largely controlled by constraints on gene flow, while genetic diversity across a species' distribution is shaped on longer temporal and spatial scales. We assess the hypothesis that oceanographic transport and other seascape features explain different scales of genetic structure of giant kelp, Macrocystis pyrifera. We followed a hierarchical approach to perform a microsatellite‐based analysis of genetic differentiation in Macrocystis across its distribution in the northeast Pacific. We used seascape genetic approaches to identify large‐scale biogeographic population clusters and investigate whether they could be explained by oceanographic transport and other environmental drivers. We then modelled population genetic differentiation within clusters as a function of oceanographic transport and other environmental factors. Five geographic clusters were identified: Alaska/Canada, central California, continental Santa Barbara, California Channel Islands and mainland southern California/Baja California peninsula. The strongest break occurred between central and southern California, with mainland Santa Barbara sites forming a transition zone between the two. Breaks between clusters corresponded approximately to previously identified biogeographic breaks, but were not solely explained by oceanographic transport. An isolation‐by‐environment (IBE) pattern was observed where the northern and southern Channel Islands clustered together, but not with closer mainland sites, despite the greater distance between them. The strongest environmental association with this IBE pattern was observed with light extinction coefficient, which extends suitable habitat to deeper areas. Within clusters, we found support for previous results showing that oceanographic connectivity plays an important role in the population genetic structure of Macrocystis in the Northern hemisphere.     

Influence of temperature and nutrients on species richness of deep water corals from the western coast of the Americas

Studies on biogeography of stony corals from the eastern Pacific have been conducted in detail only for reef species, and to date there have been no attempts to explain the differences of regional species richness on the basis of oceanographic conditions. The objective of this work was to determine the relationship between deep-water (<200 m) scleractinian species richness along the western coast of the Americas, and four oceanographic variables (temperature, nitrates, phosphates and silicates), and the feasibility to use this information to model effects of global warming on those associations. Data on coral distribution were gathered from bibliography and museum collections, while information on oceanographic conditions from 200 to 2000 m depth was obtained from NOAA atlases. Species richness, estimated for intervals of 5 degrees of latitude, was correlated with abiotic factors using the Spearman rank coefficient. In the Northern Hemisphere, total species richness was positively influenced by temperature, but negatively by nutrients. In contrast, there was no effect of those factors on coral diversity in the Southern Hemisphere. At the family level, high temperatures favored species richness of Caryophylliidae and Dendrophylliidae north of the Equator, but diversity was reduced in areas of high concentration of silicates. In the Southern Hemisphere, temperature was not associated with deep-water coral richness, but correlated negatively with diversity of Caryophylliidae. Nutrients also showed an inverse relationship with richness of the latter family. In the rest of the families analyzed, there was no apparent effect of oceanic conditions on species richness in the Southern Hemisphere. The results indicated that richness may be influenced by changes in oceanographic factors (especially temperature and silicate concentration). Then, it is feasible to develop numerical models to predict possible changes in deep-water coral diversity on the basis of scenarios from global warming models.     

Seabird species assemblages reflect hydrographic and biogeographic zones within Drake Passage

Polar Biology - Drake Passage, extending from the southern tip of South America to the northern Antarctic Peninsula, is a dynamic oceanographic region with well-defined habitats delineated by the...     

Seascape analysis reveals regional gene flow patterns among populations of a marine planktonic diatom

We investigated the gene flow of the common marine diatom, Skeletonema marinoi, in Scandinavian waters and tested the null hypothesis of panmixia. Sediment samples were collected from the Danish Straits, Kattegat and Skagerrak. Individual strains were established from germinated resting stages. A total of 350 individuals were genotyped by eight microsatellite markers. Conventional F-statistics showed significant differentiation between the samples. We therefore investigated whether the genetic structure could be explained using genetic models based on isolation by distance (IBD) or by oceanographic connectivity. Patterns of oceanographic circulation are seasonally dependent and therefore we estimated how well local oceanographic connectivity explains gene flow month by month. We found no significant relationship between genetic differentiation and geographical distance. Instead, the genetic structure of this dominant marine primary producer is best explained by local oceanographic connectivity promoting gene flow in a primarily south to north direction throughout the year. Oceanographic data were consistent with the significant F_ST values between several pairs of samples. Because even a small amount of genetic exchange prevents the accumulation of genetic differences in F-statistics, we hypothesize that local retention at each sample site, possibly as resting stages, is an important component in explaining the observed genetic structure.     

In-water and dry-dock hull fouling assessments reveal high risk for regional translocation of nonindigenous species in the southwestern Atlantic

Hydrobiologia - To assess the potential of domestic traffic for the regional spread of nonindigenous species (NIS), we surveyed the hull of an oceanographic vessel serving routes in the...     

First-ever marine mammal and bird observations in the deep Canada Basin and Beaufort/Chukchi seas: expeditions during 2002

Wildlife observers recorded the presence and distribution of birds and marine mammals along the cruise tracks of oceanographic expeditions in the Canada Basin, Beaufort Sea and Chukchi Sea during 2002. A total of 74 marine or marine-associated mammals were recorded, representing seven species. A total of 1,213 birds, representing 16 species, were recorded. The surveys took place during a combined 208 h of observation on the Louis S. St. Laurent and the RV Mirai between 16 August and 6 October 2002. The distribution of marine mammals and birds along the cruise tracks was clumped, with species tending to occur in proximity and in areas where productivity is enhanced due to oceanographic features (e.g. submarine canyons, areas of coastal upwelling, shelf break). Few species were observed in the deep Canada Basin. Polar bears and walruses appeared attracted to the ships, while belugas may have avoided them.     

Foraging in a changing environment: habitat shifts of an oceanic predator over the last half century

Spatial modelling studies stress the importance of predicting future species distribution in changing environments, but it is also important to establish historical distribution ranges of species to provide baseline conditions for understanding distribution shifts. We focused on pelagic ecosystems, the largest ecosystem on Earth. Based on boosting algorithms, we reconstructed the foraging patterns of an oceanic predator, wandering albatross Diomedea exulans, in the highly dynamic Southern Ocean over the last half century. To access the unobserved past oceanographic conditions, we used simulations of the OPA‐PISCES oceanic model for the 1958–2001 period. Firstly, we validated the simulated oceanographic variables (sea surface temperature and height, wind speed and chlorophyll a) for the 1998–2001 period with remotely sensed oceanographic data, which were highly correlated, except chlorophyll a. Secondly, we developed two habitat models (based on simulated and observed oceanographic variables) describing the foraging probability of albatrosses. We detected no statistically significant differences between the two models and predictions of both models matched the observed distribution patterns reasonably. Finally, we projected the most likely historical key pelagic habitats of albatross for the 1958 to 2001 period and characterised recurrent, occasional and unfavourable foraging areas in a decadal basis based on average predictions and their standard deviations. Our findings 1) provided a historical baseline (1958–1968) of recurrent, occasional and unfavourable foraging habitats, 2) evidenced a progressive habitat shift the following decades driven by a propagation of sea surface height from SE South Africa towards Antarctica from 1958 to 2001 and 3) measured habitat change rates of wandering albatross over the last half century. To our knowledge, our study provides the first quantitative long‐term assessment of the spatial response of a marine top predator to changing pelagic habitats of the Southern Ocean and highlighted the oceanographic mechanisms involved, offering new insights on future effects of climate change on the pelagic realm.     

Matching genetics with oceanography: directional gene flow in a Mediterranean fish species

Genetic connectivity and geographic fragmentation are two opposing mechanisms determining the population structure of species. While the first homogenizes the genetic background across populations the second one allows their differentiation. Therefore, knowledge of processes affecting dispersal of marine organisms is crucial to understand their genetic distribution patterns and for the effective management of their populations. In this study, we use genetic analyses of eleven microsatellites in combination with oceanographic satellite and dispersal simulation data to determine distribution patterns for Serranus cabrilla, a ubiquitous demersal broadcast spawner, in the Mediterranean Sea. Pairwise population F_ST values ranged between ?0.003 and 0.135. Two genetically distinct clusters were identified, with a clear division located between the oceanographic discontinuities at the Ibiza Channel (IC) and the Almeria‐Oran Front (AOF), revealing an admixed population in between. The Balearic Front (BF) also appeared to dictate population structure. Directional gene flow on the Spanish coast was observed as S. cabrilla dispersed from west to east over the AOF, from north to south on the IC and from south of the IC towards the Balearic Islands. Correlations between genetic and oceanographic data were highly significant. Seasonal changes in current patterns and the relationship between ocean circulation patterns and spawning season may also play an important role in population structure around oceanographic fronts.     

128 Capturing the Light Fantastic: Oceanographic and Tidal Influences on Intertidal Algae

Seaweeds experience many challenges to their persistence in intertidal zone habitats. Their growth rates must exceed losses associated with a range of ecological and physiological factors including desiccation, herbivory and wave forces. Growth rates depend on an alga's ability to capture and process light to build carbon-based molecules. We examined local (tidal height) and large (oceanographic) scale influences on algal photosynthetic efficiency and light climate, respectively. At the local scale, we combined periodic measurements of physiological state using PAM fluorometry with traditional demographic monitoring of a Postelsia palmaeformis , population over a tidal height gradient. Parameter estimates derived from rapid fluorescence-irradiance curves were correlated with longer-term ecological performance measures including growth rate, morphology, survivorship and reproductive output. At larger scales, we made continuous in situ measurements of chlorophyll fluorescence and light attenuation in the intertidal zone at six sites during 2001 and 2002. Light attenuation to the benthos was sharply reduced at sites when chl-a fluorescence was high. Long-term, large-scale monitoring of intertidal zone chl-a and macroalgal abundances documents that striking differences among sites are persistent and associated with oceanographic factors. The light saturation parameter and maximum photosynthetic rate calculated for several common intertidal macrophytes, along with published values of the irradiance needed to saturate their growth rates, suggest that underwater light levels may limit intertidal algal growth where phytoplankton blooms are common and persistent. We conclude that physiological stress associated with tidal and oceanographic factors contribute to macroalgal distributions.     

Oceanographic conditions and diversity of sea stars (Echinodermata: Asteroidea) in the Gulf of California, México

Species richness is one of the best indicators of biodiversity. However, there are few investigations on concordance of diversity patterns and environmental settings for marine regions. The objectives of this study were to correlate species richness of shallow water (< 200 m deep) sea stars with key oceanographic factors in the Gulf of California, México, and to predict species richness of Asteroidea using multiple regressions. In these analyses the Gulf was divided into nine sections of one degree in latitude (from 23-31 degrees N), at each section we recorded: continental shelf area (at 100 and 200 m depth), temperature mean and range at three depth levels (0, 60 and 120 m), thermocline depth, surface nutrient concentrations (nitrates, phosphates and silicates), surface photosynthetic pigment concentration, and integrated productivity. Sea star species richness at each latitudinal section was estimated from literature data, new collections and museum records. Species were assigned to one of the following feeding guilds: predators of small mobile invertebrates (I), detritivores (D), predators of colonial organisms (C), generalist carnivores (G), and planktivores (P). There are 47 shallow water asteroid species in the Gulf of California (16 I, 15 D, eight C, six G, one P and one not assigned). Total species richness and guild species richness showed strong latitudinal attenuation patterns and were higher in the southernmost Gulf, an area characterized by a narrow shelf, high temperature, and low nutrient concentrations. Species diversity for each guild was correlated to a set of oceanographic parameters: temperature, nitrate concentration, and integrated productivity were linked to richness in must cases. We detected that nutrients and surface pigments always presented negative relationships with species richness, indicating that productive environments limit asteroid diversity in the study area. Finally, the postulated regression models to estimate species richness from oceanographic data were significant and highly precise. We conclude that species richness of Asteroidea in the Gulf of California is related to oceanographic conditions and can be estimated from regional oceanographic information.     

The ‘island mass’ effect on the phytoplankton and primary production of the Hawaiian Islands

A 170 station oceanographic reconnaissance in the nearshore waters of the Hawaiian Islands has emphasized the ‘island mass’ effect in increasing primary production and chlorophyll a standing crop as well as in altering community assimilation ratios. The distribution of oceanographic parameters and micronutrients indicate that one of the enriching mechanisms is turbulence and vertical mixing in island channels.The species composition of the net phytoplankton communities characteristic of inshore, offshore, and oceanic stations is given and the relative importance of the nannoplankton component discussed. The nannoplankton dominated in all regions, with a tendency for the net/nannoplankton ratio to increase toward the base of the euphotic zone. The net phytoplankton consisted chiefly of open ocean diatom species with neritic species restricted to a narrow inshore environment.     

Oceanographic characteristics of the habitat of benthic fish and invertebrates in the Beaufort Sea

We relate the spatial variability in the distribution of benthic taxa of the Beaufort Sea to oceanographic characteristics of their habitat with the goal of illustrating potential mechanisms linking climate change to Arctic marine communities. Offshore fish of the Beaufort Sea have not been surveyed since 1977 and no synchronous measures of fish distribution and the oceanographic characteristics of their habitat have been made previously. A survey was conducted during August 2008 in the western Beaufort Sea, Alaska. The distribution and abundance of benthic fish and invertebrates were assessed with standard bottom trawl survey methods. Oceanographic data were collected at each trawl station and at several locations between stations. The dominant benthic taxa, Polar cod (Boreogadus saida), eelpouts (Lycodes sp.), and snow crab (Chionoecetes opilio) were associated with cold (<?1.5°C), high salinity (>33) water found offshore of the shelf break, derived from the Chukchi Sea. These waters are expected to be high in secondary productivity, such that we hypothesize that the distribution of fish and crab was driven by conditions favorable for successful foraging. Predictions of the impacts of climate change require an understanding of the mechanisms linking the distribution and abundance of marine organisms to their oceanographic habitat. Our study documents the association of dominant benthic fish and invertebrates of the Beaufort Sea with specific water mass types and is thus a step toward this understanding.     

Molecular ecology meets remote sensing: environmental drivers to population structure of humpback dolphins in the Western Indian Ocean

Genetic analyses of population structure can be placed in explicit environmental contexts if appropriate environmental data are available. Here, we use high-coverage and high-resolution oceanographic and genetic sequence data to assess population structure patterns and their potential environmental influences for humpback dolphins in the Western Indian Ocean. We analyzed mitochondrial DNA data from 94 dolphins from the coasts of South Africa, Mozambique, Tanzania and Oman, employing frequency-based and maximum-likelihood algorithms to assess population structure and migration patterns. The genetic data were combined with 13 years of remote sensing oceanographic data of variables known to influence cetacean dispersal and population structure. Our analyses show strong and highly significant genetic structure between all putative populations, except for those in South Africa and Mozambique. Interestingly, the oceanographic data display marked environmental heterogeneity between all sampling areas and a degree of overlap between South Africa and Mozambique. Our combined analyses therefore suggest the occurrence of genetically isolated populations of humpback dolphins in areas that are environmentally distinct. This study highlights the utility of molecular tools in combination with high-resolution and high-coverage environmental data to address questions not only pertaining to genetic population structure, but also to relevant ecological processes in marine species.