Phenotypic diversity of Xanthomonas sp. mangiferaeindicae

Carbohydrate utilization profiles by means of the API (Appareils et Procédés d'Identification) system and sensitivity to antibiotics and heavy metal salts of 68 Xanthomonas sp. mangiferaeindicae strains isolated in nine countries from mango (Mangifera indica L.) and other genera of the Anacardiaceae were examined to assess the variability of the taxon. The strains could be separated into 10 groups according to Ward clustering. Apigmented strains isolated from the pepper tree [syn. Brazilian pepper] (Schinus terebenthifolius Raddi) could not be clearly differentiated from most apigmented strains isolated from mango. Yellow-pigmented strains isolated from mango in Brazil and Reunion Island, apigmented strains isolated from mango in Brazil and from ambarella in the French West Indies, clustered in distinct groups. The results are consistent with those of other studies, based on isozyme analysis of esterase, phosphoglucomutase and superoxide dismutase, and hrp-RFLP analysis; they indicate the need for a comprehensive taxonomic evaluation of xanthomonads associated with Anacardiaceae.     

Effect of Time of Inoculation with Xanthomonas campestris pv. mangiferaeindicae on Mango Fruits Susceptibility Epiphytic Survival of X. c. pv. mangiferaeindicae on Mango Fruits in Relation to Disease Development

Susceptibility of mango fruits to bacterial black spot disease was related to the stage of fruit development and to climatic factors (rainfall and temperature). The highest percentages of infected fruits occurred when inoculations were performed during the month just before harvest. Wounds and lenticels are effective entry sites for the bacterium. The ability of lenticels to take up bacterial inoculum was estimated using safranin. The susceptibility of lenticels to entry of the pathogen was directly related to the fruit age. X. c. pv. mangiferaeindicae can survive epiphytically on immature mango fruits. Bacterial populations around 10⁵ c.f.u./fruit are commonly detected. Epiphytic X. c. pv. mangiferaeindicae were not detected on symptomless mature fruits. Those resident populations are an important source of inoculum for fruit infection. The number of bacterial spots occurring on the fruits is directly related to epiphytic populations.     

Phenotypic diversity of Xanthomonas sp. mangiferaeindicae

Carbohydrate utilization profiles by means of the API (Appareils et Procédés d'Identification) system and sensitivity to antibiotics and heavy metal salts of 68 Xanthomonas sp. mangiferaeindicae strains isolated in nine countries from mango ( Mangifera indica L.) and other genera of the Anacardiaceae were examined to assess the variability of the taxon. The strains could be separated into 10 groups according to Ward clustering. Apigmented strains isolated from the pepper tree [syn. Brazilian pepper] ( Schinus terebenthifolius Raddi) could not be clearly differentiated from most apigmented strains isolated from mango. Yellow-pigmented strains isolated from mango in Brazil and Reunion Island, apigmented strains isolated from mango in Brazil and from ambarella in the French West Indies, clustered in distinct groups. The results are consistent with those of other studies, based on isozyme analysis of esterase, phosphoglucomutase and superoxide dismutase, and hrp -RFLP analysis; they indicate the need for a comprehensive taxonomic evaluation of xanthomonads associated with Anacardiaceae.     

十字花科蔬菜细菌性黑斑病研究概述

文中介绍了十字花科蔬菜细菌性黑斑病的研究进展,主要包括病症、病害分布、病原菌特征、冠毒素及检测技术等,并介绍了十字花科蔬菜细菌性黑斑病的防治对策,从而为十字花科蔬菜的生产提供更关心翔实的理论依据。     

Suppression of the Bacterial Spot Pathogen Xanthomonas euvesicatoria on Tomato Leaves by an Attenuated Mutant of Xanthomonas perforans

A bacteriocin-producing strain of the bacterial spot of tomato plant pathogen, Xanthomonas perforans, with attenuated pathogenicity was deployed for biocontrol of a bacteriocin-sensitive strain of the genetically closely related bacterial spot of tomato plant pathogen, X. euvesicatoria. The attenuated mutant (91-118ΔopgHΔbcnB) of X. perforans was tested in leaf tissue and shown to significantly inhibit internal populations of the wild-type X. euvesicatoria strain although significantly less than the wild-type 91-118 strain, whereas in a phyllosphere inhibition assay, the mutant strain reduced epiphytic populations comparably to 91-118. Thus, the attenuated mutant limited the sensitive bacterium more efficiently on the leaf surface than inside the leaf. In field experiments, weekly application of 91-118ΔopgHΔbcnB significantly reduced X. euvesicatoria populations compared to the growers’ standard control (copper hydroxide and mancozeb applied weekly and acibenzolar-S-methyl applied every 2 weeks). The biological control agent, 91-118ΔopgHΔbcnB, applied every 2 weeks also significantly reduced X. euvesicatoria populations in one season but was not significantly different from the growers’ standard control. Potentially, attenuated pathogenic strains could be deployed as biological control agents in order to improve disease control of foliar plant pathogens.Bacterial spot of tomato is incited by several Xanthomonas spp., including Xanthomonas euvesicatoria, X. perforans, and X. vesicatoria (13). On tomato plants, three races, designated tomato race 1 (T1), T2, and T3, were originally identified based on their reactions on three tomato genotypes (22, 23, 33, 37). These races, T1, T2, and T3, are principally members of X. euvesicatoria, X. vesicatoria, and X. perforans, respectively. Control of bacterial spot of tomato is extremely difficult when moderate-to-high temperatures and high moisture conditions exist. The disease causes significant damage to the crop, resulting in major losses (27). Management is primarily limited to bactericides, such as fixed coppers (3, 20, 32); however, copper-tolerant strains have become prevalent (31, 32) and chemical control alone is insufficient to control the disease under optimal weather conditions. Additionally, the use of copper compounds has led to soil contamination in some instances (16).Recently, there has been increased interest in integrated biological control strategies for bacterial diseases (5, 7, 11, 19, 23). However, optimization of biocontrol agents for consistent disease suppression for many bacterial diseases has been difficult. Studies are increasing our understanding of the ecology of nonpathogenic saprophytes as biocontrol agents, but their selection is limited to labor-intensive protocols. New biological control strategies are currently being sought, including the use of bacteriocins, bacteriophages, and attenuated plant pathogens (4, 5, 7, 9, 11, 23, 26, 35, 38).For many years, only X. euvesicatoria (T1) was present on tomato plants in Florida. In 1991, X. perforans (T3) appeared in Florida tomato fields (15) and eventually became the prevalent race (14). Following that observation, Jones et al. (12) demonstrated that when X. perforans and X. euvesicatoria were coinoculated onto tomato plants in the field, X. perforans displaced X. euvesicatoria and became the predominant strain. Further studies revealed that the competitive nature of X. perforans was due in large part to its antagonism toward X. euvesicatoria strains (9, 12, 36). Tudor-Nelson et al. (36) identified three different bacteriocins, designated BCN-A, BCN-B, and BCN-C, which were found to confer the ability to inhibit X. euvesicatoria strains in plate assays. Hert et al. (9) determined that these bacteriocins provided X. perforans strains with a competitive advantage in the greenhouse and field and that a mutant X. perforans strain expressing only BCN-A and BCN-C was most effective in displacing X. euvesicatoria and outcompeted wild-type (WT) X. perforans. Field experiments conducted with a nonpathogenic Hrp⁻ strain of X. perforans as a potential biocontrol agent for controlling X. euvesicatoria resulted in marginal control (18). Although the WT X. perforans strain has a competitive advantage over X. euvesicatoria populations, Hrp⁻ mutants such as that used in the study by Liu (18) do not appear to have the necessary competitiveness to suppress X. euvesicatoria populations.Previous research has focused on colonization of the plant by biocontrol agents to determine the relationship between invasion efficiency and biological control efficacy. For example, Frey et al. (8) achieved only low-to-moderate levels of biological control of a WT bacteriocin-sensitive strain of Ralstonia solanacearum when using a bacteriocin-producing nonpathogenic Hrp⁻ mutant strain of R. solanacearum. However, control using a moderately pathogenic hrp mutant (hrcV) capable of higher levels of colonization of the root and stem achieved greater disease suppression (6). Etchebar et al. (6) suggested that there was a positive correlation between colonization of the xylem by the hrp mutant and the level of control of WT R. solanacearum. As a result of previous studies showing that nonpathogenic strains of X. perforans only provide low levels of biological control (18), we hypothesized that using an attenuated pathogenic bacteriocin-producing strain of X. perforans rather than a nonpathogenic strain may increase the efficiency of control under field conditions.In this study, our strategy was to use an attenuated mutant of X. perforans that colonizes leaf tissue more effectively than nonpathogenic strains do and potentially provides more effective colonization and increases the likelihood for interaction between X. perforans and X. euvesicatoria. We selected strain 91-118ΔopgHΔbcnB as the biocontrol agent since it was previously shown that deletion of the osmoregulated periplasmic glucan gene opgH resulted in a pathogenic phenotype with a significantly reduced ability to cause disease and internal colonization in susceptible tomato tissue (22). The selected mutant also lacked BcnB activity based on a previous study in which BcnB appeared to negatively affect competitive ability in that a ΔbcnB mutant was more effective at colonizing tomato leaves in field experiments than WT X. perforans was (9).     

Guignardia citricarpa a Cause of Black Spot on Mango Foliage in Florida1

A strain of Guignardia citricarpa Kiely was isolated from infected mango (Mangifera indica L.) leaves. The morphological and physiological characteristics of perithecia and ascospores were identical with those described for G. citricarpa. Inoculated leaves developed lesions 7 to 10 days after ascospore germination. Young lesions appeared as minute, sunken, blackish depressions on upper and lower leaf surfaces. Mature lesions were roughly circular ranging from 1 to 2 mm in diameter. The fungus was consistently reisolated from the lesions which appeared on the leaves, arising from inoculation. Benomyl at 1.7 g/l provided control of black spot.     

Genome sequence of Xanthomonas citri pv. mangiferaeindicae strain LMG 941

We report the 5.1-Mb genome sequence of Xanthomonas citri pv. mangiferaeindicae strain LMG 941, the causal agent of bacterial black spot in mango. Apart from evolutionary studies, the draft genome will be a valuable resource for the epidemiological studies and quarantine of this phytopathogen.     

Serological and Lysotypical Variability of Xanthomonas albilineans (Ashby) Dowson, Causal Agent of Sugarcane Leaf Scald Disease

The serological and lysotypical properties of 28 strains of X. albilineans originating from different geographic zones were analysed. Using the indirect immunofluorescence technique with 3 anti X. albilineans immunsera, the existence of three serovars was shown. The isolation of lytic bacteriophages from the soil enabled us to classify the bacterial strains into 6 lysovars. A correspondance between serovars and lysovars was revealed. These results show a variability of the X. albilineans species, and enable an analysis of the structure of its populations to be proposed, especially that of Tropical Africa.     

Angular Leaf Spot of Iron Wood Incited by a Pathovar of Pseudomonas syringae

A fluorescent pseudomonad inciting brown angular leaf spots on iron wood (Parotia persica) in Mazandaran forest was isolated and identified as a pathovar of Pseudomonas syringae. Strains assimilated adonitol and L-tartrate but not lactate or D-tartrate as carbon sources for growth. The electrophoretic profiles of cell proteins of strains isolated from iron wood were very similar but differred markedly from protein profile of P. syringae pv. syringae.     

Angular Leaf Spot of Iron Wood Incited by a Pathovar of Pseudomonas syringae

A fluorescent pseudomonad inciting brown angular leaf spots on iron wood (Parotia persica) in Mazandaran forest was isolated and identified as a pathovar of Pseudomonas syringae. Strains assimilated adonitol and L-tartrate but not lactate or D-tartrate as carbon sources for growth. The electrophoretic profiles of cell proteins of strains isolated from iron wood were very similar but differred markedly from protein profile of P. syringae pv. syringae.     

Factors affecting bacterial black spot of mangoes caused by Xanthomonas campestris pv. mangiferaeindicae

Bacterial black spot of mango caused by Xanthomonas campestris by. mangiferaeindicae was found to be essentially a wound pathogen of leaves under glasshouse conditions, with maximum infection occurring at a temperature regime of 22/26 ^oC (night/day). There were significant differences in leaf susceptibility among cultivars, cv. Sensation being less, and cv. Haden more susceptible than cvs Zill and Kent, which agrees with field observations of fruit infection. The organism is a phylloplane resident year round in the field and inoculum levels in the tree canopy affect ultimate fruit infection. The major weather factor affecting fruit infection was rainfall which showed a significant correlation (r = 0–77) with levels of infection after allowing for an approximate 2 wk latent period. Other significant correlations were with a wind/rain index (r = 0–73) and a storm index (r = 0–66). The correlation of disease with the duration of free water was non-significant (r = 0–22).     

Comparative Genomic Analyses of the Bacterial Phosphotransferase System

We report analyses of 202 fully sequenced genomes for homologues of known protein constituents of the bacterial phosphoenolpyruvate-dependent phosphotransferase system (PTS). These included 174 bacterial, 19 archaeal, and 9 eukaryotic genomes. Homologues of PTS proteins were not identified in archaea or eukaryotes, showing that the horizontal transfer of genes encoding PTS proteins has not occurred between the three domains of life. Of the 174 bacterial genomes (136 bacterial species) analyzed, 30 diverse species have no PTS homologues, and 29 species have cytoplasmic PTS phosphoryl transfer protein homologues but lack recognizable PTS permeases. These soluble homologues presumably function in regulation. The remaining 77 species possess all PTS proteins required for the transport and phosphorylation of at least one sugar via the PTS. Up to 3.2% of the genes in a bacterium encode PTS proteins. These homologues were analyzed for family association, range of protein types, domain organization, and organismal distribution. Different strains of a single bacterial species often possess strikingly different complements of PTS proteins. Types of PTS protein domain fusions were analyzed, showing that certain types of domain fusions are common, while others are rare or prohibited. Select PTS proteins were analyzed from different phylogenetic standpoints, showing that PTS protein phylogeny often differs from organismal phylogeny. The results document the frequent gain and loss of PTS protein-encoding genes and suggest that the lateral transfer of these genes within the bacterial domain has played an important role in bacterial evolution. Our studies provide insight into the development of complex multicomponent enzyme systems and lead to predictions regarding the types of protein-protein interactions that promote efficient PTS-mediated phosphoryl transfer.     

Variability of Acartia clausi in the Black Sea

There are two morphotypes of A. clausi in the Black Sea. The diversity in the spine ornamentation of the last prosomal and urosomal segments generally has been decreasing in both morphotypes during the period of this study (1976–1990). Seasonal data showed increased variability in April.     

Genomic BLUP Decoded: A Look into the Black Box of Genomic Prediction

Genomic best linear unbiased prediction (BLUP) is a statistical method that uses relationships between individuals calculated from single-nucleotide polymorphisms (SNPs) to capture relationships at quantitative trait loci (QTL). We show that genomic BLUP exploits not only linkage disequilibrium (LD) and additive-genetic relationships, but also cosegregation to capture relationships at QTL. Simulations were used to study the contributions of those types of information to accuracy of genomic estimated breeding values (GEBVs), their persistence over generations without retraining, and their effect on the correlation of GEBVs within families. We show that accuracy of GEBVs based on additive-genetic relationships can decline with increasing training data size and speculate that modeling polygenic effects via pedigree relationships jointly with genomic breeding values using Bayesian methods may prevent that decline. Cosegregation information from half sibs contributes little to accuracy of GEBVs in current dairy cattle breeding schemes but from full sibs it contributes considerably to accuracy within family in corn breeding. Cosegregation information also declines with increasing training data size, and its persistence over generations is lower than that of LD, suggesting the need to model LD and cosegregation explicitly. The correlation between GEBVs within families depends largely on additive-genetic relationship information, which is determined by the effective number of SNPs and training data size. As genomic BLUP cannot capture short-range LD information well, we recommend Bayesian methods with t-distributed priors.