Revisiting Ross and Sims (1971): toward a molecular phylogeny of the Biddulphiaceae and Eupodiscaceae (Bacillariophyceae)

The ocellate and pseudocellate diatoms in the Eupodiscaceae and Biddulphiaceae (respectively) are common inhabitants of the marine littoral (and plankton zone) with a rich fossil history making them important components of marine stratigraphic studies and good candidates for molecular dating work. These diatoms are important for un‐derstanding the phylogeny of the diatoms as a whole, as molecular phylogenies have blurred the traditional distinction between the pennate and multipolar non‐pennate diatoms. However, the convoluted taxonomic history of these groups has the potential to disrupt both stratigraphic and molecular dating studies. Although efforts have been made to examine frustule morphology of several ocellate and pseudocellate diatoms and develop a morphological scheme to define genera, very little work has been done to determine how these groups are interrelated. In this study, we use nuclear and chloroplast molecular markers to construct a phylogeny of a diverse sampling of Eupodiscaceae and Biddulphiaceae taxa. The ocellus‐bearing taxa (Eupodiscaceae) are monophyletic, and thus the ocellus may be a useful character in delimiting the Eupodiscaceae, the Biddulphiaceae are polyphyletic and scattered across a number of lineages of multipolar non‐pennate diatoms. Hypothesis testing aimed at assessing the likeliness of several morphology based hypotheses against the molecular data highlights uncertainty in both types of data. We present evidence that there are monophyletic genera within both the Biddulphiaceae and Eupodiscaceae, and recommend the taxa within the Odontella mobilensis/sinensis/regia clade be transferred to a new genus: Trieres Ashworth & Theriot.     

Mediterranean karst springs: diatom biodiversity hotspots under the pressure of hydrological fluctuation and nutrient enrichment

Abstract

Mediterranean karst springs are affected by strong climatic seasonality, with long, dry and hot summers and are increasingly threatened by anthropogenic pressures. In Sardinia (western Mediterranean Sea, Italy), they are largely unexplored and their biocoenoses are mostly unknown. The diatom flora from two substrates (cobbles and macrophytes) in eight springs of different areas of the island was investigated in summer 2016 and winter 2017. A total of 162 diatom taxa (58 genera) were found of which 27 (17 genera) only on cobbles and 26 (18 genera) only on macrophytes. The most abundant species from both substrates were Achnanthidium minutissimum, Amphora indistincta, Amphora pediculus, Cocconeis euglypta, Planothidium frequentissimum and P. lanceolatum. Overall, 67 taxa (40 genera) were recorded in single sites and some of these taxa showed high affinity with specific environmental conditions. Hydrological stability (water flow permanence), discharge and nutrients were the main environmental factors influencing diatom assemblages. Our results suggest that diatoms can reflect important local factors related to the vulnerability of these spring ecosystems and underline the importance of their preservation both for biodiversity and water quality maintenance.     

黑龙江省七星河湿地硅藻植物的初步研究

报道了2004年对黑龙江省七星河湿地国家级自然保护区的硅藻门植物研究的结果,共发现155个分类单位,包括113种39变种3变型,分别隶属于2纲6目9科26属,其中中国新记录2种2变种1变型共计5个分类单位,初步分析了七星河湿地硅藻植物群落的种类组成及生态类型,大部分的硅藻属于普生种类,同时出现了一些喜酸种类如：Eunotia pectinalis var. ventralis(Ehr.)Hust., Tabellaria flocculosa(Roth) Kütz.,Gomphonema augur Ehr.,Navicula subtilissima Cl.等,还有少量的嗜碱性种类出现。     

New data on the flora of diatom algae (Centrophyceae) in waterbodies of Sakhalin Island

The first studies of phytoplankton in inland waterbodies of Sakhalin Island by electron microscopy have revealed 19 representatives of the class Centrophyceae, including some that are new for the flora of the region (Aulacoseira subarctica, Coscinodiscopsis commutata, Stephanodiscus delicatus, S. makarovae, Thalassiosira baltica, and T. cf. hyalina). Species of centric diatoms that are new for these waterbodies have been documented in lakes Vavaiskiye and Tunaicha, and the species composition of Centrophyceae have been revised. The first complete data on the taxonomical spectrum of Centrophyceae in Lake Sladkoye, lakes of Mount Spamberg, and the Tym River have been obtained. A revision of the species composition of Centrophyceae in the waterbodies of Sakhalin Island has been made, and the list of the class has been broadened to 44 taxa from 17 genera.     

SEM observations of some noteworthy diatoms from the Ikpoba reservoir,Nigeria

ABSTRACT

Eighteen taxa of diatoms from the Ikpoba reservoir, southern Nigeria are listed in this report. They belong to the genera Cymbella, Stenopterobia, Eunotia, Brachysira, Frustulia, Navicula, Pinnularia, Stauroneis and Surirella. The occurrences and distribution of the algae are indicated. Two of these taxa occurred very frequently, six frequently and four occasionally. Five taxa had rare occurrences while one was very rare. They were compared with national as well as regional records.     

PHYTOPLANKTON OF THE SUSQUEHANNA RIVER NEAR BINGHAMTON,NEW YORK: SEASONAL VARIATIONS; EFFECT OF SEWAGE EFFLUENTS1,2

Net phytoplankton samples were collected weekly for 13 months at points above and below sewage effluents. Sixty-three genera and 130 taxa were identified: diatoms, 19 genera, 44 taxa; greens, 31 genera, 67 taxa; blue-greens, 6 genera, 8 taxa. Downstream from the sewage effluents the number of taxa was unchanged but the number of organisms was definitely increased. This increase was most pronounced for green and blue-green algae, and least for diatoms. The seasonal distribution of algae was that usually seen in waters of the North Temperate Zone. The particular taxa and number of taxa found were those of productive waters but not typical of heavily polluted waters.     

Diatoms in surface sediments of the Gotland Basin in the Baltic Sea

A sediment core, 55 cm long, from station F81 in the Gotland Basin of the Baltic Sea was analysed for diatoms and ebridians. Chrysophyte stomatocysts found in the core were also counted but not identified. The aim was to trace environmental changes, e.g. eutrophication and salinity variations. There is evidence that eutrophication has been increasing in the Baltic Sea in recent decades.Brackish-marine plankton diatoms dominate the entire core and reflect the local planktonic taxa rather well. The dominant taxon is the polyhalobous Actinocyclus octonarius. The main biostratigraphical change within the core analysed takes place at a depth of about 22 cm, where the abundance of diatoms, and especially of Chaetoceros spp., Thalassiosira hyberborea var. pelagica and T. baltica start to increase. This may reflect eutrophication which can be estimated to have started c. 200 years ago.     

Systematics of naviculoid diatoms (Bacillariophyta): A preliminary analysis of protoplast and frustule characters for family and order level classification

The relationships between 49 naviculoid diatoms, currently arranged in 14 families and four orders were investigated using cladistic analysis in order to test the types of characters used in diatom systematics and to assess how well the current classification reflects possible phylogenetic relationships in this group. Some of the families and orders comprise taxa with different protoplast characters, or taxa with similar protoplast arrangements are placed in separate families or orders. Therefore as both cell wall and protoplast characters were used, three analyses were undertaken; total data, protoplast data and frustule data. The analyses support the recognition of the Mastogloiales (unequivocally) and the Cymbellales (largely) but indicate that some of the familial groupings are more ambiguous. The members of the Berkeleyaceae, Berkeleya, Parlibellus and Climaconeis, were never grouped together and Achnanthes brevipes never grouped with the other monoraphid diatoms, but usually with members of the Mastogloiales (total and protoplast data). Similarly, Round et al.’s familial groupings within the Cymbellales do not emerge from our analyses. Our results support the hypothesis that monoraphid genera have arisen independently from different naviculoid diatoms, and that Achnanthes sensu stricto should be transferred to the Mastogloiales. Some of the problems associated with incomplete information and inaccurate terminology are discussed briefly.     

CHROMOSOME NUMBERS IN UMBELLIFERAE. III

Chromosome numbers are reported for 156 collections representing 100 taxa of Umbelliferae. Approximately two thirds of the collections are from Mexico, Central and South America and indicate a high percentage of polyploid species in certain genera found in this area. Chromosome numbers for plants belonging to 78 taxa are published here for the first time, previously published chromosome numbers are verified for 18 taxa and chromosome numbers differing from those previously published are reported in seven instances. No chromosome counts have been previously published for nine of the genera included here. Further aneuploidy and polyploidy were found in Eryngium, and Lomatium columbianum has been found to be a high polyploid with 2n = 14x. Every chromosome count is referable to a cited herbarium specimen.     

Microalgal–meiofaunal interactions in a sublittoral site of the Gulf of Trieste (northern Adriatic Sea, Italy): A three-year study

Monthly sediment sampling was carried out from February 1999 to December 2001 at a 21-m deep station. Benthic diatom biomass and meiobenthic abundance were estimated together with abiotic parameters (PAR irradiance, temperature, salinity and dissolved oxygen). During the three-year study average microphytobenthic abundance (ABU) and biomass (BIOM) were 4.7 ± 2.6 × 10⁴ cell cm^− 3 and 14.3 ± 8.1 µg C cm^− 3, respectively, while the mean meiofaunal abundance was 923 ± 210 ind 10 cm^− 2. The microphytobenthic community was mainly composed of Bacillariophyceae (99.3%) with a smaller percentage of phytoflagellates (0.7%). Among diatoms 39 genera were observed with a total of 110 taxa and 100 species. The main benthic diatom genera were Navicula, Paralia, Nitzschia and Diploneis. A total of 18 meiobenthic taxa were detected: 7 taxa belonged to permanent meiofauna (Nematoda, Copepoda Harpacticoida and their nauplius stages, Kinorhyncha, Turbellaria, Gastrotricha, Ostracoda and Acarina). The remaining 11 taxa belonged to temporary meiofauna (juvenile macrofauna: Polychaeta, Cumacea, Amphipoda, Isopoda, Nemertea, Decapoda, Sipunculida, Ophiurida, Gastropoda, Bivalvia and Cnidaria). Positive correlations between PAR and the biomass of the major diatom genera were revealed. Temperature did not seem to influence the microphytobenthic community as a whole, although we found statistically significant correlation between temperature and the genera Nitzschia and Amphora. Salinity showed significant positive correlation only with the genus Pleurosigma, in contrast, dissolved oxygen did not seem to affect the microalgal community. The major meiofaunal taxa were not correlated with abiotic variables, but were positively correlated with most diatom genera. Paralia was negatively correlated with the three main meiofaunal taxa. The three-point moving average applied to our biotic data allowed us to better the signal without the background noise which hid the actual variations of the studied communities. Applying the three-point moving average to the main taxa, it resulted that microphyto- and meiobenthos were in phase. The principal component analysis (PCA), constructed considering both biotic and abiotic variables, accounted for 58% of the total variance. PC1 axis explained 39.74% of the total variance and was correlated with Navicula, Diploneis and Nitzschia. PC2 axis explained 18.40% of the remaining variance and was correlated with Copepoda, Paralia and PAR. In contrast to 1999 and 2001, a mucilage event occurred in 2000, which resulted in the formation of a false bottom and a decrease in the abundance of microphyto- and meiobenthos.     

Ultrastructural and molecular characterization of diversity among small araphid diatoms all lacking rimoportulae. I. Five new genera,eight new species

Pennate diatoms are important contributors to primary production in freshwater and marine habitats. But the extent of their diversity, ecology, and evolution is still largely unknown. This is particularly evident among the clades of pennate diatoms without raphe slits, whose diversity is likely underestimated due to their small size and features that can be difficult to discern under light microscopy. In this study, we described five new araphid genera with eight new species based on morphological observations (light and electron microscopy) and molecular data (nuclear‐encoded small subunit ribosomal RNA and chloroplast‐encoded rbcL and psbC): Serratifera varisterna, Hendeyella rhombica, H. dimeregrammopsis, H. lineata, Psammotaenia lanceolata, Castoridens striata, C. hyalina, and Cratericulifera shandongensis. We also transferred Dimeregramma dubium to Hendeyella dubia. Phylogenetic analysis of the molecular data revealed that all the newly established taxa fell into a monophyletic group, with Fragilariforma virescens located at the base. The group was composed by two subclades: one comprising Castoridens, Cratericulifera, and Plagiostriata, and the larger including also the rest of the new genera plus some of the smallest known diatoms, such as Nanofrustulum, Opephora, Pseudostaurosira, Staurosirella, and Staurosira with a high level of support. This study enhances the general knowledge on the phylogeny and biodiversity of a group of small araphid diatoms that have been generally poorly described both by electron microscopy and DNA sequence data.     

Seasonal variations of diatoms and dinoflagellates in a shallow,temperate estuary,with emphasis on neritic assemblages

Seasonal changes in the diatom and dinoflagellate assemblages were examined in the neritic zone of the Urdaibai estuary (north Spain) with regard to some major physical and chemical variables during an annual cycle. A total of 81 diatoms and 38 dinoflagellates were identified and quantified during the study period. Both groups displayed a distinctive pattern of seasonal succession. The seasonal distribution of the Shannon index showed a trend of increasing values from the upper estuary to the lower neritic segment. The diatom diversity maxima were observed in February, April and September, and dinoflagellate maxima in April–May, July and October. Diatoms dominated the assemblages, reaching 1×10⁶ cells l^–1 from April to September. A shift from large diatoms and dinoflagellates to small bloom-forming taxa was observed during winter–early spring. A spring diatom bloom composed of Rhizosolenia spp. was observed in April, while small chain-forming taxa (chiefly Chaetoceros spp.) dominated from June to September. Cell maxima for both groups in late summer were produced by the diatoms Chaetoceros salsugineum and Skeletonema costatum, and by the dinoflagellates Heterocapsa pygmaea and Peridinium quinquecorne. Silicate availability by river supply and strong tidal-mixing of the water column seem to determine the year-round dominance of diatoms over dinoflagellates.     

Freshwater diatom biogeography in the Canadian Arctic Archipelago

Aim Document the biogeographical distributions of diatoms in the Canadian Arctic in relation to environmental factors. Location The Canadian Arctic Archipelago. Methods Diatoms were extracted from lake sediments and treated using standard methods. Rarefaction‐estimated species richness, diatom concentrations (valves cc^?1), and diatom abundance were mapped using a Geographic Information System. The physical and chemical parameters of the lakes were measured. Results A total of 326 taxa from 63 genera were found in 62 lakes of the study area. Up to 85 and as low as eight taxa were identified in any one lake, and rarefaction‐estimated species richness correlated with lake size. Nearby lakes could have greatly different diatom assemblages. Many taxa showed limited distributions. Response surfaces and ordination techniques indicate that a large number of taxa prefer colder regions of the Arctic while the abundance of others was influenced by lake water chemical parameters such as TKN and SiO₂. Main conclusions Although many taxa were common and found across the study area, diatom assemblages showed regional differences in the Arctic. Some taxa were not found in either the northern or southern parts of the Archipelago and others were restricted to particular regions. Newly delineated genera showed interpretable geographical patterns and could be related to environmental factors, suggesting that this more natural grouping may enhance our understanding of diatom ecology. Geographical, physical, and chemical factors are needed to explain diatom distributions in the Arctic.     

New species and new records of diatoms from Lake Fuxian,China

Abstract One new species, four newly recorded genera, and two newly recorded species of diatoms are described from China. They are Sellaphora fuxianensis sp. nov. Li, Sellaphora Mereschkowsky, Karayevia Round & Bukhtiyarova, Placoneis Mereschkowsky, Fallacia Stickle & Mann, Placoneis prespanensis Levkov, Krstic & Nakov, and Fallacia lucinensis (Hustedt) D. G. Mann. All taxa were collected from Lake Fuxian in Yunnan Province, China. These species were observed with light and scanning electron microscopes, and their taxonomic characters are discussed.     

Biodiversity and ecology of epilithic diatoms in the Agnéby River,Ivory Coast

The ecology and taxonomy of the epilithic diatom flora of the Agnéby River, Ivory Coast were studied in 2012. Ten sites were investigated and diatoms were sampled on glass slides immersed for a period of 30 days during the wet and dry seasons. Physico-chemical parameters were measured at each site while sampling diatoms. Five taxa were largely dominant: Planothidium comperei CE Wetzel, N’Guessan and Tison-Rosebery, Eolimna minima (Grunow) Lange-Bertalot, Planothidium piaficum (JR Carter and Denny) CE Wetzel and Ector, Cocconeis schroederi Foged and Cocconeis scutellum var. parva (Grunow in Van Heurck) Cleve. Electrical conductivity, temperature, dissolved oxygen, nitrite and phosphorus were found to influence the distribution of taxa.     

上海市滩涂夏季底栖硅藻初步研究

报道了上海市夏季滩涂底栖硅藻的种类组成和生态分布的情况。样品于2005年8月从7个站点中采集,经处理、镜检观察,从中鉴定出硅藻98个分类单位,包括种、变种和变型,分别隶属于2纲7目10科31属。舟形藻属(Navicula)最多,共发现15个分类单位;其次为菱形藻属(Nitzschia),有10个分类单位。其中Cyclotella meneghiniana,Gyrosigma spencerii,Surirella ovata为优势种,Fragilaria capucina,Gyrosigma attenuatum,Naicula acceptata等为常见种,Melosira italica,Coscinodiscus wittianus,Navicula pygmaea等只在个别站点采到。数量分析表明,硅藻总细胞丰度变化为7.0×106-28.5×106 cells m-2,平均为17.39×106cellsm-2,在径流入海口处硅藻数量相对较多,其中淡水种比海生种多,这主要是因为长江口近岸河口水域是多种水系相混合的水体,淡水入海带来较多的淡水种类。     

Freshwater diatom and macroinvertebrate diversity of coastal permanent ponds along a gradient of human impact in a Mediterranean eco-region

Mediterranean coastal areas are characterised by heavily transformed landscapes and an ever-increasing number of ponds are subjected to strong alterations. Although benthic diatoms and macroinvertebrates are widely used as indicators in freshwater ecosystems, little is still known about the diatom communities of lowland freshwater ponds in the Mediterranean region, and, furthermore, there are few macroinvertebrate-based methods to assess their ecological quality, especially in Italy. This article undertakes an analysis of benthic diatom and macroinvertebrate communities of permanent freshwater ponds, selected along a gradient of anthropogenic pressures, to identify community indicators (taxa and/or metrics) useful to evaluate the effect of human impacts. A series of 21 ponds were sampled along Tyrrhenian coast in central Italy. Five of these ponds, in a good conservations status and surrounded by woodland were selected as ‘reference sites’ for macroinvertebrates and epipelic diatoms. The remaining sixteen ponds were located in an agricultural landscape subject to different levels of human impact. The total number of macroinvertebrate taxa found in each pond was significantly higher in reference sites than in both the intermediate and heavily degraded ones, whereas the diatom species richness did not result in a good community variable to evaluate the pond ecological quality. The analysis revealed a substantial difference among the compositions of diatom communities between reference ponds and degraded ponds. The former were characterised by the presence of several species belonging to genera, such as Pinnularia sp., Eunotia sp., Stauroneis sp., Neidium sp., all of which were mostly absent from degraded ponds. Furthermore, the taxonomic richnesses of some macroinvetebrate groups (Odonata, Ephemeroptera, Trichoptera, Coleoptera), and taxa composition attributes of macroinvertebrate communities (total abundance, percentages of top three dominant taxa, percentages of Pleidae, Ancylidae, Hirudinea, Hydracarina) significantly correlated with variables linked with anthropogenic pressures. The results of the investigation suggested that diatoms tended more to reflect water chemistry through changes in community structure, whereas invertebrates responded to physical habitat changes primarily through changes in taxonomic richness. The methodologies developed for the analysis of freshwater benthic diatom and macroinvertebrate communities may have a considerable potential as a tool for assessing the ecological status of this type of water body, complying with the European Union Water Framework Directive 2000/60/EC. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Guest editors: B. Oertli, R. Cereghino, A. Hull & R. Miracle Pond Conservation: From Science to Practice. 3rd Conference of the European Pond Conservation Network, Valencia, Spain, 14–16 May 2008     

A study of Bacillariophyta flora in water bodies and water courses of the Messoyakha River (Gydansky Peninsula)

A total of 236 species and intraspecific taxa of Bacillariophyta diatoms from 55 genera, including 15 new ones for Russian flora, were found in an SEM study of phytoplankton in Lake Glubokoe and large tributaries (Nizhnyaya Messoyakha, Purparod, Erparod, Paravanga, and Nyakhataparod) in the basin of the lower reaches of the Messoyakha River. The maximum species diversity was recorded in the tributaries Nizhnyaya Messoyakha (117), Nyakhataparod (109), and Lake Glubokoe (97). The following species are the most widespread in the studied water bodies: Asterionella formosa, Aulacoseira subarctica, Navicula cryptocephala, Nitzschia gracilis, and Tabellaria flocculosa.     

Size variations of planktonic Aulacoseira Thwaites (Diatomae) in water and in sediment from Finnish lakes of varying trophic state

We measured siliceous frustules of diatoms belonging to the genus Aulacoseira Thwaites in phytoplankton samples of 33 lakes in Finland, and found some significant relationships between the frustule dimensions and the concentrations of total phosphorous, phosphate phosphorus, total nitrogen and nitrate nitrogen in lake water. The size alterations appeared to be species specific and the studied taxa showed different patterns of morphometic change along the nutrient gradients. Some taxa were clearly smaller in eutrophic and mesotrophic lakes. We also observed size reductions of diatoms in the upper parts of sediment cores from two lakes which have apparently become more nutrient rich during recent decades.