A new superfamily classification of the Caridea (Crustacea: Pleocyemata) based on phylogenetic pattern

Present groupings of Caridea are notoriously unsatisfactory at the superfamily level. Principles of phylogenetic systematics are used to reconstruct 14 monophyletic subgroups of Caridea, based on 19 synaomorphies of adults. The following sequenced phylogenetic classification is provided (main diagnostic character for each superfamily within brackets): 1. Atyoidea (distal lash of Mxp, reduced); Oplophoridae; Atyidae; Pasiphaidae; Agostocarididae; Alvinocarididae; Bresiliidae; Psalidopodidae; Disciadidae; 2. Stylodactyloidea (mandibular palp with 2 segments or absent); Stylodactylidea; Campylonotidae; 3. Eugonatonotoidea (abdominal somite III with dorsal carina bifurcate); Eugonatonotidae; 4. Palaemonoidea (basal segment of antennular peduncle with distolateral tooth); Rhynchocinetidae; Palaemonidae; 5. Nematocarcinoidea (ventral lobe of scaphognathite narrowly triangular); Nematocarcinidae; 6. Pandaloidea (P₁ with chela microscoic or absent); Pandalidae; “Plesionikidae”; Heterocarpidae; Heterocarpoididae; Dorodoteidae; Thalassocarididae; Physetocarididae; 7. Crangonoidea (incisor process of mandible absent); Barbouriidae; Lysmatidae; Merguiidae, fam. n.; Processidae; Glyphocrangonidae; Crangonidae; 8. Alpheoidea (carpus of P₂ with less than 17 segments); Merhippolytidae, fam. n.; Nauticarididae; Alopidae; Bythocarididae; Thoridae; Hippolytidae; Pterocarididae, fam. n.; Ogyrididae; Alpheidae. The monotypic hippolytid taxon Thorellinae, subfam. n., has been formally diagnosed. A survey of the lower Caridea has furnished 276 enera and 2418 species and subspecies. The new superfamily system is simpler, genealogically informative and more precisely diagnosed than previous schemes. These have failed as general reference systems because they were based on the wrong premises that similarities indicate phylogenetic relationships or can be used to construct a single acceptable hierarchy.     

A CLADISTIC ANALYSIS OF THE FAMILY TRISTIRIDAE (ORTHOPTERA, ACRIDOIDEA)

Abstract— A cladistic analysis of the endemic South American family Tristiridae was performed using 29 characters from external morphology and the genitalia. Polarity of characters was based on the outgroup comparison method. One most parsimonious cladogram of 54 steps was obtained, from which a classification of the family Tristiridae was constructed. The analysis of phylogenetic relationships showed that the different kinds of characters define taxa at different levels in the cladogram. Those mostly from the phallic complex define suprageneric taxa while those from external morphology characterize genera. It is hypothesized that in Tristiridae differentiation of the phallic complex preceded differentiation of external morphology and that characters from the phallic complex arc less conservative than those from the external morphology.     

滇桐属系统位置的分支分析

本文以讨论系统位置有争议的滇桐属的归属问题,尝试在植物分类学中具体应用分支系统学原理和方法的可能性。作者认为近年来分支系统学中出现的一种倾向,即不再强调祖先和直接的谱系关系,而把分支图解仅仅作为一种归类手段,为本文提供了理论基础。通过对梧桐科和椴树科7个属15个性状状态的分支分析,建立了符合简约性原则的分支图解。分支图解表明,滇桐属与通常置于梧桐科的马克韦桐属具有较密切的关系,而它们与椴树科的关系比与梧桐科的关系更接近。结论支持把滇桐属作为椴树科成员的观点。     

Unweaving hippolytoid systematics (Crustacea,Decapoda, Hippolytidae): resurrection of several families

The Hippolytidae is the fourth largest family within the Caridea, currently containing over 330 described species in 37 genera, and the classification of this family has been rather controversial. In this study, sequences of two nuclear protein‐coding genes, enolase and sodium‐potassium ATPase α‐subunit, and the mitochondrial 16S rRNA gene (totalling 1405 bp) from 29 hippolytid species in 20 genera plus 17 species from eight other caridean families were used to examine the phylogenetic status of Hippolytidae sensu lato. Our results clearly reject the monophyly of Hippolytidae and support the recognition of the Lysmatidae Dana, 1852, Thoridae Kingsley, 1879, Bythocarididae Christoffersen 1987 and Merguiidae Christoffersen 1990 .     

Comments on hexanchiform phylogeny (Pisces, Neoselachii)

The Hexanchiformes (Cow Sharks) are regarded as a monophyletic taxon. Cladistic analysis shows that among the various neoselachian taxa proposed so far as the sister group of the Hexanchiformes a sister group relationship between the Hexanchiformes and a (still unnamed) taxon comprising the Squaliformes and Pristiophoriformes appears as the most probable hypothesis. In addition, MAISEY and WOLFRAM'S (1984) concept of hexanchiform interrelationships is critically reviewed. An alternative cladogram of hexanchiform interrelationships is developed which includes Recent as well as fossil hexanchiform taxa. In this cladogram the living genera Hexancbus and Notorynchus are sister groups and both taxa together form the sister group of the Recent Heptranchias. The fossil taxa +Notidanoides, +“Hexanchus” gracilis, +Notidanodon and +Weltonia are arranged in the stem lineage of recent Hexanchiformes.     

云南姜科植物的增补与修订

据中国植物志(1981),云南有姜科植物17属, 78种,9变种。其后多篇文章论及一些种属,标本也有较多的增加。本文根据现有的标本与文献资料对云南姜科植物作增补与修订,共涉及16属15种,包括1个新种,7个修定后的异名。云南共计有姜科植物18属,148种和11变种。     

PHYLOGENY AND CLASSIFICATION OF THE PANDALOIDEA (CRUSTACEA, CARIDEA)

Abstract— A manual cladistic analysis, subsequently expanded with a PAUP computer analysis, was performed on 21 genera of the monophyletic taxon Pandaloidea. Morphological data were obtained from the literature for 146 of the 152 known species-group taxa and from specimens belonging to 11 genera and 15 species—those of Pantomus parvulus extending the known range from the North Western Atlantic to Uruguay. The taxon Physetocaridoidca was synonymized with Pandaloidea, and the genus Pandalopsis with “Pandalus”. I have rejected reversal hypotheses indicated by the computer for four transformation series and chosen a final cladogram of slightly different topology which is six steps longer than the shortest tree. The cladogram for 20 terminal taxa is based on 108 apomorphic characters, resolved into 155 steps (72 synapomorphies and 83 homoplasies and reversals). The following sequenced phylogenctic classification is proposed: Pandaloidea; Pandalidae; Pantominae subfam.n.; Notopandalus [N. magnoculus]; Peripandalus [P. serratus]; Pantomus; P. ajfinis; P. parvulus; Pandalinae; Austropandalini trib.n.; Austropandalus [A. grayi]; Pandalina; P. brevirostris; P. profunda; Pandalini; Dichdopandalus; D. bonnieri; D. leptorerus; Pandalus: “Plcsionikidae” [“Plesionika”]; Heterocarpidae [Heterocarpus]; Heterocarpoididae fam.n. [Heterocarpoides] [H. levicarina]; Dorodoteidae fam.n. [Dorodotes] [D. reflexus]; Thalassocarididae; Chlorotocus; C. crassicornis; C. novaezelandiae; Chlorotocoides [C. spinicauda]; Thalassocaris;, T. obscura; T. crimia; T. lucida; Physetocandidae; Stylopandalus [S. richardi]; Chlorotocella; C. gracilis; C. leptorhjnehus; Physetocaris [P. microphthalma]; Chlorocurtis [C. jactans]; Anachlorocurtis [A, commensalis]; Miropandalus [M. hardingi]. Quotation marks indicate taxa of uncertain systematic status. Square brackets indicate redundant, phylogenetically uninformative, genus and species-level taxa maintained in the classification to comply with the principle of binominal nomenclature.     

Note on the first phyllosoma stages of Palinurellus wieneckii (de Man, 1881) and Puerulus aff. angulatus (Bate, 1888) (Crustacea, Decapoda, Synaxidae and Palinuridae) from New Caledonia

We describe the first stage phyllosoma (‘phyllamphion’)larvae of two species taken from the plankton off New Caledoniaand which we refer to as Palinurellus wieneckii (de Man, 1881)and Puerulus aff. angulatus (Bate, 1888).     

Larval morphology and biology of oxycorynine weevils and the higher phylogeny of Belidae (Coleoptera, Curculionoidea)

Phylogenetic relationships among members of the family Belidae (Curculionoidea) were reconstructed through cladistic analysis using 58 characters and 17 terminals. The characters were from larval morphology (30), adult morphology (25) and biology regarding larval host-plants and feeding habits (three). They were scored for exemplar taxa in 17 genera, representing different belid subfamilies and tribes, plus two outgroup taxa in Megalopodidae and Nemonychidae. The sampled genera included all those for which larval and adult information is available, and two known only from adults. New information on the larvae and biology of two oxycorynines is provided. These are the Chilean Oxycraspedus cribricollis , whose larvae live in decayed female strobili of the gymnosperm Araucaria araucana , and Hydnorobius hydnorae from Argentina, whose larvae, described and illustrated in the present paper, develop inside the flower and fruit bodies of Prosopanche americana (Hydnoraceae), a root-parasitic angiosperm. The relationships proposed by the single optimal cladogram resulting from simultaneous analysis of all taxa and characters are recovered by one of three optimal cladograms based on the larval data set alone. The cladogram justifies a revised classification of Belidae in two sister subfamilies: Belinae (with tribes Pachyurini, Agnesiotidini and Belini) and Oxycoryninae (with tribes Oxycorynini and Aglycyderini). It summarizes larval and adult synapomorphies defining the family Belidae, subfamilies and tribes. Based on the phylogenetic tree, the evolution of biological traits is traced. Larval development in vegetative organs of conifers is ancestral in Belidae. A shift to reproductive structures characterizes the Oxycorynini, a habit which was conserved while several shifts to distantly related host-plant groups occurred.     

A phylogenetic analysis of Pisum based on morphological characters, and allozyme and RAPD markers

Cladistic analyses of 17 wild and cultivated pea taxa were performed using morphological characters, and allozyme and RAPD (random amplified polymorphic DNA) markers. Both branch-and-bound and bootstrap searches produced cladograms that confirmed the close relationships among the wild species and cultivars of Pisum proposed by a variety of systematic studies. Intraspecific rankings were supported for northern P. humile, southern P. humile, P. elatius and P. sativum, which together comprise a single-species complex. P. fulvum, while clearly the most divergent of the pea taxa, could also be assigned to the same species complex without violating the hierarchial logic of the cladogram. Its inclusion or exclusion depends on whether the level of interfertility it displays with other pea taxa or its overall morphological and chromosomal distinction are emphasized. As suggested by previous studies, northern P. humile was the most likely sister taxon to cultivated P. sativum; although, rigorous phylogenetic evaluation revealed a close genealogical affinity among P. elatius, northern P. humile and P. sativum. Despite their limited number, the 16 morphological characters and allozyme markers used precisely organized the pea taxa into established taxonomic groupings, perhaps in part reflecting the role morphology has played historically in pea classification. The RAPD data also generally supported these same groupings and provided additional information regarding the relationships among the taxa. Given that RAPDs are relatively quick and easy to use, are refractory to many environmental influences, can be generated in large numbers, and can complement traditional characters that may be limited in availability, they provide a valuable new resource for phylogenetic studies.     

Cladistics and the comparative morphology of linyphiid spiders and their relatives (Araneae, Araneoidea, Linyphiidae)

This paper provides the first quantitative cladistic analysis of linyphiid morphology. Classical and novel homology hypotheses for a variety of character systems (male and female genitalia, somatic morphology, spinneret silk spigot morphology, etc.) are critically examined and studied within a phylogenetic context. Critical characters have been illustrated. A sample of linyphiid taxa (nine genera in four subfamilies), five species of Pimoa (Pimoidae), and two other araneoid families (Tetragnathidae and Araneidae, represented by Tetragnatha and Zygiella , respectively) were used to study the implications of the phylogeny of Pimoidae for the systematics of linyphiids. The phylogenetic relationships of these 16 exemplar taxa, as coded for the 47 characters studied, were analysed using numerical cladistic methods. In the preferred cladogram Pimoidae and Linyphiidae are sister groups, Stemonyphantinae are sister group to the remaining linyphiids, and Mynogleninae are sister group to the clade composed of Erigoninae plus Linyphiinae. These results agree with the relationships recently proposed by Wunderlich, except by finding erigonines as the sister group to linyphiines rather than to mynoglenines.     

Review of the systematics and phylogenetic relationships of the Sabethini (Diptera: Culicidae)

This paper reviews the historical treatment of the tribe Sabethini and genus-group taxa and examines the unusual life histories associated with the group. Although recognized by taxonomists as distinct, the taxonomic position of sabethines has been questioned and their rank within the family Culicidae unstable. In order to evaluate the current status of the classification of the tribe a cladistic analysis is performed. Thirty-seven taxa are selected from within the Sabethini and two outgroups were chosen from the tribe Aedini. Exemplars are selected from genus-group taxa world-wide and new and traditional character systems examined in larval, pupal and adult life stages. The results firmly establish the sabethines as a monophyletic group. However, the genera Runchomyia , Tripteroides and Wyeomyia are not demonstrably monophyletic. In addition, the data support the New World taxa as a monophyletic group to a paraphyletic assemblage of Old World taxa. The pattern displayed by the cladogram suggests the ability to vector arboviruses has arisen more than once in mosquitoes.     

Larvae of the deep-sea Nematocarcinidae (Crustacea: Decapoda: Caridea) from the Southern Ocean

The early larval stages of the deep-sea Nematocarcinidae, Nematocarcinus longirostris Bate, 1888, from the south-western Atlantic Ocean, and N. lanceopes Bate, 1888, from the high Antarctic Weddell Sea, were obtained from plankton catches, described and illustrated. Furthermore, field collected larvae of N. lanceopes were compared with larvae hatched and reared under constant laboratory conditions. The morphology of larvae in both species clearly indicates a planktotrophic and extended mode of larval development. This is an outstanding feature in deep-sea and especially in high-latitudinal caridean shrimp species, and the consequence of such reproductive trait for life history adaptations to both deep-sea and polar environments is discussed.This revised version was published online in November 2004 with corrections to the figure part lettering.     

中国慈姑属系统发育的研究

本文研究了中国慈姑属植物间的系统发育关系。选取了12个与该属系统发育有较重要关系的特征,将8个已知分类群与外类群刺果泽泻属进行了比较。应用数量分支分析的Farris-Wagner方法,建立了中国慈姑属系统发育分支图。讨论了各分类群间的系统发育关系、该属起源和数量分支分析方法等问题。     

一种改进的PAE方法及其在锦鸡儿组(锦鸡儿属)特有性分析中的应用

针对特有性简约性分析（PAE）不足之处,提出一个新的改进分析方法。主要区别是,新方法对分布区内分类群区分了原始和演化,相应地编码为0／1;为了获取分类群原始和演化的特性,分析以分类群分支图为基础。新方法是系统发育与地理分布相统一原理的一个具体的定量化探讨。用新方法分析了豆科锦鸡儿属锦鸡儿组15种,结果表明新方法优于以前的PAE方法。用新的改进方法分析得到的可能的祖先分布区是原始类群树锦鸡儿和一大类属内原始类群的分布区。与目前属的起源问题的一般观点相一致。     

Cladistic analysis of Enkianthus with notes on the early diversification of the Ericaceae

The genus Enkianthus (Ericaceae) has been subject to a cladistic analysis of morphological, anatomical, embryological, and cytological data, using two species of Clethra as outgroup. In order to evaluate the monophyly of Enkianthus , the genera Epigaea and Phyllodoce from the subfamily Rhododendroideae, and the genus Andromeda from the subfamily Vaccinioideae were also included in an initial analysis which yielded 20 equally parsimonious cladograms. The results indicated that Enkianthus is monophyletic, and a subsequent analysis with only the outgroup taxa and 14 species of Enkianthus yielded two equally parsimonious cladograms with a more resolved topology. In order to obtain strictly monophyletic taxa, the current subgeneric classification of Enkianthus is revised, recognizing four sections: Enkianthus (9 spp.), Andromedina (2 spp.), Meisteria (2 spp.), and Enkiantella (4 spp.). The paper provides a key, illustrations of representative taxa, a cladogram, and strict consensus trees.     

Lemma micromorphological characters in the Chloridoideae (Poaceae) optimized on a molecular phylogeny

Eight lemma micromorphological characters of 83 taxa representing 61 genera in the Chloridoideae have been investigated using Scanning Electron Microscopy, including long cells, cork cells, stomata, bicellular microhairs, papillae, silica cells, microprickles, and macrohairs. Five new types of lemma micromorphological characters were reported here. Data for 27 taxa representing 19 genera from previous publications were also supplied to access the homology of lemma micromorphological characters for different groups through optimization onto a molecular cladogram. Given the optimization, five characters including long cells, cork cells, stomata, papillae, microprickles are of phylogenetic significance for supra-generic groups. Seven characters including straight outline long cells, crescent-shaped cork cells, absent stomata, absent papillae, dumb-bell-shaped silica cells, c-type microprickles, and papillate-base macrohairs may not be homologous, however, the enneapogonoid-type bicellular microhairs appeared as a synapomorphy for the Chloridoideae.     

Pacific Coast Iris species delimitation using three species definitions: biological, phylogenetic and genealogical

Morphological characters are used to discriminate the five Oregon species of the Pacific Coast irises ( Iris series Califomicae ). In nearly every case, fixed differences were found between species, revealing that they are good phylogenetic species. However, when the biological species concept is applied, the whole series is found to be one biological species. Sequence data were generated from the chloroplast DNA region between the atp β and rbc L genes. For this 700 bp region, the maximum divergence observed in the series was one percent. These sequences, together with three restriction site characters, were used to produce a cladogram for multiple individuals of all species in the group. On the resulting consensus cladogram, the different individuals from each species do not cluster together. This could result from either introgressive hybridization or the retention of ancestral polymorphism. When the genealogical species concept is applied, only one species can be identified: the whole Series Califomicae. There are therefore two natural levels at which taxa can be defined. It is recommended that the phylogenetic species be used as the taxonomic species in this group.     

First records of Atyoida serrata (CS Bate, 1888) from South Africa (Crustacea: Caridea: Atyidae)

Collections of Atyoida serrata (CS Bate, 1888) are reported from KwaZulu-Natal, South Africa for the first time. This species is currently known only from the lower reaches of the Mgeni, Vungu and Mtamvuna river systems where it occupies rocky cascades and rock crevices in torrential habitats.     

What is a cladogram and what is not?

The origins and meanings of “cladogram” are reviewed. Traditionally, “cladogram” has been defined as a graphical representation of an empirical hypothesis of relationships among taxa, based on evidence from synapomorphies alone. Disturbingly, numerous recent authors treat “cladogram” as synonymous with “dendrogram” and do not appreciate the particular methodological connotations of the former term. This is lamented.