Hydrothermal and thermal time models for the invasive grass, Arundo donax

Controlled laboratory and field experiments were performed to determine the developmental response to temperature and moisture of Arundo donax, a riparian invasive grass and potential bioenergy crop. A logistic function was parameterized and used to predict thermal times to sprouting and the nine-leaf stage. Consistent estimates of the base temperature (T_b) and base water potential (ψ_b) below which development ceases were obtained from various statistical and mathematical analyses. Estimates of T_b and ψ_b were 12.7 ± 1.7 °C and −1.56 ± 0.43 MPa, respectively, for the median fraction of sprouting rhizomes. Median hydrothermal time to sprouting was 124.1 MPa °Cd under laboratory conditions and median thermal times, or degree-day (°Cd), to sprouting and nine-leaf stage was estimated to be 94 and 129 °Cd under field conditions, respectively. A degree-day is defined as one day (24 h) spent one degree above T_b. Results demonstrated that thermal time alone is sufficient to accurately predict time to sprouting under field conditions. Further, there may be a fixed moisture threshold of about 6% volumetric water content above which sprouting rate was constant. This threshold corresponded very closely to the −1.5 MPa for ψ_b that was estimated under laboratory conditions for the soil typically infested by A. donax. This information is crucial for assessing risk of invasive spread for A. donax.     

Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2

Archaerhodopsin-2 (aR2), a retinal protein-carotenoid complex found in the claret membrane of Halorubrum sp. aus-2, functions as a light-driven proton pump. In this study, the membrane fusion method was utilized to prepare trigonal P321 crystals (a = b = 98.2 Å, c = 56.2 Å) and hexagonal P6₃ crystals (a = b = 108.8 Å, c = 220.7 Å). The trigonal crystal is made up of stacked membranes in which the aR2 trimers are arranged on a honeycomb lattice. Similar membranous structures are found in the hexagonal crystal, but four membrane layers with different orientations are contained in the unit cell. In these crystals, the carotenoid bacterioruberin [5,32-bis(2-hydroxypropan-2-yl)-2,8,12,16,21,25,29,35-octamethylhexatriaconta-6,8,10,12,14,16,18,20,22,24,26,28,30-tridecaene-2,35-diol] binds to crevices between the subunits of the trimer. Its polyene chain is inclined from the membrane normal by an angle of about 20° and, on the cytoplasmic side, it is surrounded by helices AB and DE of neighbouring subunits. This peculiar binding mode suggests that bacterioruberin plays a striking structural role for the trimerization of aR2. When compared with the aR2 structure in another crystal form containing no bacterioruberin, the proton release channel takes a more closed conformation in the P321 or P6₃ crystal; i.e., the native conformation of protein is stabilized in the trimeric protein-bacterioruberin complex. Interestingly, most residues participating in the trimerization are not conserved in bacteriorhodopsin, a homologous protein capable of forming a trimeric structure in the absence of bacterioruberin. Despite a large alteration in the amino acid sequence, the shape of the intratrimer hydrophobic space filled by lipids is highly conserved between aR2 and bacteriorhodopsin. Since a transmembrane helix facing this space undergoes a large conformational change during the proton pumping cycle, it is feasible that trimerization is an important strategy to capture special lipid components that are relevant to the protein activity.     

Synthesis and electrochemical aspects of group 14 iron complexes of the type (η-C5H5)Fe(L)2ER3, L2 = (CO)2, (Ph2P)2CH2; E = C, Si, Ge, Sn

The dicarbonyl and diphosphine complexes of the type (η⁵-C₅H₅)Fe(L)₂ER₃ (L₂ = (CO)₂ (a), (Ph₂P)₂CH₂ (b); ER₃ = CH₃ (1a/b); SiMe₃ (2a/b), GeMe₃ (3a/b), SnMe₃ (4a/b)) were synthesized and studied electrochemically. Cyclic voltammetric studies on the dicarbonyl complexes 1a-4a revealed one electron irreversible oxidation processes whereas the same processes for the chelating phosphine series 1b-4b were reversible. The E_ox values found for the series 1a-4a were in the narrow range 1.3-1.5 V and in the order Si > Sn ≈ Ge > C; those for 1b-4b (involving replacement of the excellent retrodative π-accepting CO ligands by the superior σ-donor and poorer π-accepting phosphines) have much lower oxidation potentials in the sequence Sn > Si ≈ Ge > C. This latter oxidation potential pattern relates directly to the solution ³¹P NMR chemical shift data illustrating that stronger donation lowers the E_ox for the complexes; however, simple understanding of the trend must await the results of a current DFT analysis of the systems.     

Structure–function of cyanobacterial outer-membrane protein,Slr1270: Homolog of Escherichia coli drug export/colicin import protein,TolC

Compared to thylakoid and inner membrane proteins in cyanobacteria, no structure–function information is available presently for integral outer-membrane proteins (OMPs). The Slr1270 protein from the cyanobacterium Synechocystis 6803, over-expressed in Escherichia coli, was refolded, and characterized for molecular size, secondary structure, and ion-channel function. Refolded Slr1270 displays a single band in native-electrophoresis, has an α-helical content of 50–60%, as in E. coli TolC with which it has significant secondary-structure similarity, and an ion-channel function with a single-channel conductance of 80–200 pS, and a monovalent ion (K⁺:Cl⁻) selectivity of 4.7:1. The pH-dependence of channel conductance implies a role for carboxylate residues in channel gating, analogous to that in TolC.     

The Enterobacter aerogenes outer membrane efflux proteins TolC and EefC have different channel properties

The outer membrane proteins TolC and EefC from Enterobacter aerogenes are involved in multidrug resistance as part of two resistance-nodulation-division efflux systems. To gain more understanding in the molecular mechanism underlying drug efflux, we have undertaken an electrophysiological characterization of the channel properties of these two proteins. TolC and EefC were purified in their native trimeric form and then reconstituted in proteoliposomes for patch-clamp experiments and in planar lipid bilayers. Both proteins generated a small single channel conductance of about 80 pS in 0.5 M KCl, indicating a common gated structure. The resultant pores were stable, and no voltage-dependent openings or closures were observed. EefC has a low ionic selectivity (P_K/P_Cl = ∼ 3), whereas TolC is more selective to cations (P_K/P_Cl = ∼ 30). This may provide a possible explanation for the difference in drug selectivity between the AcrAB-TolC and EefABC efflux systems observed in vivo. The pore-forming activity of both TolC and EefC was severely inhibited by divalent cations entering from the extracellular side. Another characteristic of the TolC and EefC channels was the systematic closure induced by acidic pH. These results are discussed in respect to the physiological functions and structural models of TolC and EefC.     

Neighbouring metal induced oxidative addition at the iron centre amongst the iron-arylpyridylphosphine complexes

Complexes of the type (η⁴-BuC₅H₅)Fe(CO)₂(P) (P = PPh₂Py 3, PPhPy₂4, PPy₃5; Py = 2-pyridyl) were satisfactorily prepared. Upon treatment of 3 with M(CO)₃(EtCN)₃ (M = Mo, 6a; W, 6b), the pyridyl N-atom could be coordinated to the metal M, which then eliminates a CO ligand from the Fe-centre and induced an oxidative addition of the endo-C-H of (η⁴-BuC₅H₅). This results in a bridged hydrido heterodimetallic complex [(η⁵-BuC₅H₄)Fe(CO)(μ-P,N-PPh₂Py)(μ-H)M(CO)₄] (M = Mo, 7a, 81%; W, 7b, 76%). The reaction of 4 or 5 with 6a,b did not give the induced oxidative addition, although these complexes contain more than one pyridyl N-atom. The reaction of 4 with M(CO)₄(EtCN)₂ (M = Mo, 9a; W, 9b) produced heterodimetallic complexes [(η⁴-BuC₅H₅)Fe(CO)₂(μ-P:N,N′-PPhPy₂)M(CO)₄] (M = Mo, 10a, 81%; W, 10b, 83%). Treatment of 5 with 6a,b gave [(η⁴-BuC₅H₅)Fe(CO)₂(μ-P:N,N′,N″-PPy₃)M(CO)₃] (M = Mo, 12a, 96%; W, 12b, 78%).     

Synthesis and characterization of new coordination polymers generated from oxadiazole-containing ligands and IIB metal ions

The coordination chemistry of the oxadiazole-containing rigid bidentate ligands 2,5-bis(4-pyridyl)-1,3,4-oxadiazole (L1) and 2,5-bis(3-pyridyl)-1,3,4-oxadiazole (L2) with inorganic IIB metal salts have been investigated. Five new coordination polymers (1-5) were prepared by solution reactions and fully characterized by infrared spectroscopy, elemental analysis, and single-crystal X-ray diffraction. Cd(L1)₂(CH₃CN)₂](ClO₄)₂ · (CH₃CN)₂ (1) crystallized in the monoclinic space group P2₁/c, a = 8.4028(5) Å, b = 21.3726(13) Å, c = 10.5617(7) Å, β = 95.1200(10)°, and Z = 2. In the solid state, it adopts an infinite two-dimensional polymeric structural motif with effective cross section of ca. 14.31 × 14.31 Å. Cd(L2)(H₂O)(NO₃)₂ (2) crystallized in the monoclinic space group Ia, a = 7.1203(5) Å, b = 22.2475(15) Å, c = 20.2652(16) Å, β = 90.6080(10)°, and Z = 8. In the solid state, the two Cd(II) centers are connected to each other by L2 ligands and bridging nitrates into a two-dimensional network. [ZnCl₂(L1)] (3) and [HgI₂(L1)] · CH₃CN (4) crystallized in the monoclinic crystal system (3: P2₁/c, a = 5.3702(3) Å, b = 20.4800(11) Å, c = 12.4093(7) Å, β = 94.7930(10)°, and Z = 4; 4: P2/n, a = 17.2733(11) Å, b = 5.2173(3) Å, c = 20.4069(13) Å, β = 102.8690(10)°, and Z = 4). In the solid state, Zn(II) and Hg(II) metal centers are connected to each other by L1 ligands into a zigzag chain motif. Compound 5 (HgBr₂(L2) is different from 3 and 4, monoclinic, P2(1)/n, a = 5.470(4) Å, b = 16.271(13) Å, c = 16.486(12) Å, β = 93.197(15)°, and Z = 4) adopts a novel one-dimensional helical chain motif which resulted from the relative different coordinated orientation of the two N-donors on L2 ligand.     

The cytochrome ba complex from the thermoacidophilic crenarchaeote Acidianus ambivalens is an analog of bc1 complexes

A novel cytochrome ba complex was isolated from aerobically grown cells of the thermoacidophilic archaeon Acidianus ambivalens. The complex was purified with two subunits, which are encoded by the cbsA and soxN genes. These genes are part of the pentacistronic cbsAB-soxLN-odsN locus. The spectroscopic characterization revealed the presence of three low-spin hemes, two of the b and one of the a_s-type with reduction potentials of + 200, + 400 and + 160 mV, respectively. The SoxN protein is proposed to harbor the heme b of lower reduction potential and the heme a_s, and CbsA the other heme b. The soxL gene encodes a Rieske protein, which was expressed in E. coli; its reduction potential was determined to be + 320 mV. Topology predictions showed that SoxN, CbsB and CbsA should contain 12, 9 and one transmembrane α-helices, respectively, with SoxN having a predicted fold very similar to those of the cytochromes b in bc₁ complexes. The presence of two quinol binding motifs was also predicted in SoxN. Based on these findings, we propose that the A. ambivalens cytochrome ba complex is analogous to the bc₁ complexes of bacteria and mitochondria, however with distinct subunits and heme types.     

Barium inhibition of sodium ion transport in toad bladder

The effect of Ba²⁺ on Na⁺ transport and electrical characteristics of toad bladder was determined from change produced in short circuit current (I_sc, epithelial, apical and basal-lateral potentials (ψ_t, ψ_a, ψ_b), epithelial and membrane resistances (R_t, R_a, R_b) and shunt resistance (R_s). Mucosal Ba²⁺ had no effect. Serosal Ba²⁺ reduced I_sc, ψ_t, ψ_a, and ψ_b, but had no effect on R_t, R_a, R_b and R_s. Minimal effective Ba²⁺ concentration was 5 · 10^?5 M. The phenomenon was reversed by Ba²⁺ removal, but not by 86 mM serosal K⁺. Ba²⁺ inhibition of I_sc did not impair the response to vasopressin which was quantitatively the same as controls. ψ_a with Ba²⁺ equalled ψ_b. After Ba²⁺ inhibition, ouabain produced no further decrease in ψ_t and I_sc. Ba²⁺ exposure after ouabain did not decrease ψ_t and I_sc. The results suggest that Ba²⁺ inhibits the basal-lateral electrogenic Na⁺ pump.     

A novel inorganic and organic mixture cations templated indium phosphate: Synthesis and crystal structure

A novel mixture cations templated indium phosphates, Li(C₂N₂H₁₀)[In₂(HPO₄)₃(PO₄)], has been synthesized under mild hydrothermal conditions and characterized by elemental analysis and FT-IR spectrum. The crystal structure of title compound was determined by single crystal X-ray diffraction data. It belongs to monoclinic, space group P2/n with unit cell dimension a = 9.4692(13) Å, b = 9.1622(12) Å, c = 9.7063(14) Å, β = 117.5620(10)°. Its structure is characterized as a three-dimensional open-framework with 8-membered ring channels along a axis, where the inorganic lithium cation and organic double-protonated ethylenediamine cation are located and interact with the framework both electrostatically and via hydrogen bonds of N-H?O.     

Crystal structures of mixed oxonium-cadmium(II) salts with [SbF6]/[Sb2F11] anions: From complex chains to layers and three-dimensional frameworks

Pure H₃OCd(SbF₆)(Sb₂F₁₁)₂ is prepared by the reaction of CdO with nSbF₅ (n ? 5) or by reaction of H₃OSbF₆, Cd(SbF₆)₂ and nSbF₅ (n ? 2) in anhydrous hydrogen fluoride. H₃OCd(SbF₆)(Sb₂F₁₁)₂ crystallizes in the monoclinic space group P2₁/a (No. 14) with a = 986.1(4) pm, b = 1257.3(5) pm, c = 1826.8.4(8) pm, β = 98.062(4)° and Z = 4.Reaction of CdO with SbF₅ (n ? 3) in anhydrous HF yields only a mixture of H₃OSbF₆ and Cd(SbF₆)₂. No reactions were observed also when different ratios of H₃OSbF₆ and Cd(SbF₆)₂ were used as starting materials. However, the re-crystallization of these mixtures yielded single crystals of new phases: (H₃O)₂Cd(SbF₆)₃(Sb₂F₁₁) and (H₃O)₂Cd₂F(SbF₆)₅. The former crystallizes in the orthorhombic Pcca space group (No. 54) with a = 2189(2) pm, b = 1121.2(8) pm, c = 1894(1) pm and Z = 8 and the latter in the monoclinic P2₁/a space group a = 1019(4) pm, b = 1112(1) pm, c = 1147(1) pm, β = 107.81(1)° and Z = 2. The attempt to prepare single crystals of Cd(SbF₆)₂ resulted in the preparation of few single crystals of (H₃O)[Cd(HF)]₄(SbF₆)₉, which crystallizes in the monoclinic space group C2/c (No. 15) with a = 2087(3) pm, b = 1021(5) pm, c = 2112(2) pm, β = 99.36(2)° and Z = 4.     

Water dimers connect [Cu(cda)(py)3] (cda = pyridine-4-hydroxy-2,6-dicarboxylate, py = pyridine) complex units to left- and right-handed helices that form a tubular coordination polymer through supramolecular bonding

The reaction between pyridine-4-hydroxy-2,6-dicarboxylic acid (cdaH₂) and Cu(NO₃)₂ · 3H₂O afford products that depend on the reaction conditions applied. In presence of excess of aqueous pyridine (1:2 v/v), equimolar amounts of the reactants form {[Cu(cda)(py)₃]₂ · 5H₂O}_n (1). In this complex, dimeric water clusters are H-bonded to carboxylate O atoms forming both left- and right-handed helices. These helices are further H-bonded to form a tubular coordination polymer. It crystallizes in the monoclinic space group P2₁/a with a = 14.235(5), b = 23.097(4), c = 15.542(6) Å, β = 114.392(5)°, V = 4654(2) Å³, Z = 4, R₁ = 0.0422, wR₂ = 0.0992, S = 0.899. When pyridine is used in place of aqueous pyridine, a new coordination polymer, {Cu(cda)(py)}_n(2) is formed that crystallizes in the monoclinic space group P2₁/c with a = 12.391(5), b = 12.770(5), c = 7.135(5) Å, β = 95.155(5)°, V = 1124(1) Å³, Z = 4, R₁ = 0.0415, wR₂ = 0.0882, S = 1.190. The structure of 2 consists of carboxylate-bridged [Cu(cda)(py)] units extending as a zigzag infinite chain where each metal ion shows square-pyramidal geometry. Variable temperature magnetic susceptibility measurements in the temperature range, 2-300 K for 2 is also reported.     

Lewis-base copper(I) formates: Synthesis, reaction chemistry, structural characterization and their use as spin-coating precursors for copper deposition

Consecutive synthesis methodologies for the preparation of a series of copper(I) formates [L_mCuO₂CH] (L = ⁿBu₃P: 4a, m = 1; 4b, m = 2; 5, L = [Ti](CCSiMe₃)₂, m = 1, [Ti] = (η⁵-C₅H₄SiMe₃)₂Ti) and [L_mCuO₂CH·HO₂CR] (L = ⁿBu₃P: 7a, m = 1, R = H; 7b, m = 2, R = H; 7c, m = 2, R = Me; 7d, m = 2, R = CF₃; 7e, m = 2, R = Ph. L = (^cC₆H₁₁)₃P, R = H: 8a, m = 2; 8b, m = 3. L = (CF₃CH₂O)₃P, R = H: 9a, m = 2; 9b, m = 3. L = (CH₃CH₂O)₃P, R = H: 10a, m = 2; 10b, m = 3. L = [Ti](CCSiMe₃)₂; m = 1: 11a, R = H; 11b, R = Ph) is reported using [CuO₂CH] (1) and L (2a, L = ⁿBu₃P; 2b, L (^cC₆H₁₁)₃P; 2c, L = (CF₃CH₂O)₃P; 2d, L = (CH₃CH₂O)₃P; 3, L = [Ti](CCSiMe₃)₂) as key starting materials. Addition of formic acid (6a) or carboxylic acid HO₂CR (6b, R = Me; 6c, R = CF₃; 6d, R = Ph) to the afore itemized copper(I) formates 4 and 5 gave metal-organic or organometallic 7-11. The molecular structures of 8a and 11a in the solid state are reported showing a threefold coordinated copper(I) ion, setup by either two coordinatively-bonded phosphorus atoms and one formate oxygen atom (8a) or two π-bonded alkyne ligands and one oxygen atom (11a). A formic acid molecule is additionally hydrogen-bonded to the CuO₂CH moiety. The use of 7b as suitable precursor for the deposition of copper onto TiN-coated oxidized silicon wafers by the spin-coating process below 300 °C is described. Complex 7b offers an appropriate transformation behavior into metal phase by an elimination-decarboxylation mechanism. The morphology of the copper films strongly depends on the annealing conditions. A closed grain network densified by a post-treatment is obtained (8 °C min⁻¹, N₂/H₂ carrier gas). Hydrogen post-anneal to 420 °C after film deposition gave a copper film showing resistivities from 2.5 to 3.7 μΩ cm. This precursor was also used for gap-filling processes.     

Selective leishmanicidal effect of 1,3,4-thiadiazole derivatives and possible mechanism of action against Leishmania species

With the aim of determining selectivity and the possible target(s) of nitroheteroaryl-1,3,4-thiadiazoles considered as possible leads for the development of anti-leishmanial agents, we studied 5-nitroimidazole, 5-nitrofuran and 5-nitrothiophene analogs of N-substituted-piperazinyl-1,3,4-thiadiazoles. We investigated 21 representative compounds 1-3(a-g) for the following properties: selectivity and efficiency against different Leishmania wild type species and intracellular parasite, toxicity against host cells and inhibition of topoisomerases I and II. Our results indicate that the nitroimidazole analogs 1a and 1f, and nitrofuran derivatives 2a, 2b, 2c, 2f, and 2g exhibited low toxicity against the host cells (IC₅₀ ? 80 μM), but high selectivity against intracellular amastigotes (selectivity index > 12). Leishmania topoisomerases revealed impressive sensitivity to the agents (%inhibition >50 at IC₅₀ doses of compounds against Leishmania). Our findings showed that at least part of leishmaniacidal effect of the compounds could be attributed to disruption DNA-relaxed activities of topoisomerases I and II, and cleavable-complex formation.     

Towards structural elucidation of eukaryotic photosystem II: Purification, crystallization and preliminary X-ray diffraction analysis of photosystem II from a red alga

Crystal structure of photosystem II (PSII) has been reported from prokaryotic cyanobacteria but not from any eukaryotes. In the present study, we improved the purification procedure of PSII dimers from an acidophilic, thermophilic red alga Cyanidium caldarium, and crystallized them in two forms under different crystallization conditions. One had a space group of P222₁ with unit cell constants of a = 146.8 Å, b = 176.9 Å, and c = 353.7 Å, and the other one had a space group of P2₁2₁2₁ with unit cell constants of a = 209.2 Å, b = 237.5 Å, and c = 299.8 Å. The unit cell constants of both crystals and the space group of the first-type crystals are different from those of cyanobacterial crystals, which may reflect the structural differences between the red algal and cyanobacterial PSII, as the former contains a fourth extrinsic protein of 20 kDa. X-ray diffraction data were collected and processed to a 3.8 Å resolution with the first type crystal. For the second type crystal, a post-crystallization treatment of dehydration was employed to improve the resolution, resulting in a diffraction data of 3.5 Å resolution. Analysis of this type of crystal revealed that there are 2 PSII dimers in each asymmetric unit, giving rise to 16 PSII monomers in each unit cell, which contrasts to 4 dimers per unit cell in cyanobacterial crystals. The molecular packing of PSII within the unit cell was constructed with the molecular replacement method and compared with that of the cyanobacterial crystals.     

Respiratory system of Gluconacetobacter diazotrophicus PAL5 Evidence for a cyanide-sensitive cytochrome bb and cyanide-resistant cytochrome ba quinol oxidases

In highly aerobic environments, Gluconacetobacter diazotrophicus uses a respiratory protection mechanism to preserve nitrogenase activity from deleterious oxygen. Here, the respiratory system was examined in order to ascertain the nature of the respiratory components, mainly of the cyanide sensitive and resistant pathways. The membranes of G. diazotrophicus contain Q₁₀, Q₉ and PQQ in a 13:1:6.6 molar ratios. UV_360 nm photoinactivation indicated that ubiquinone is the electron acceptor for the dehydrogenases of the outer and inner faces of the membrane. Strong inhibition by rotenone and capsaicin and resistance to flavone indicated that NADH-quinone oxidoreductase is a NDH-1 type enzyme. KCN-titration revealed the presence of at least two terminal oxidases that were highly sensitive and resistant to the inhibitor. Tetrachorohydroquinol was preferentially oxidized by the KCN-sensitive oxidase. Neither the quinoprotein alcohol dehydrogenase nor its associated cytochromes c were instrumental components of the cyanide resistant pathway. CO-difference spectrum and photodissociation of heme-CO compounds suggested the presence of cytochromes b-CO and a₁-CO adducts. Air-oxidation of cytochrome b (432 nm) was arrested by concentrations of KCN lower than 25 μM while cytochrome a₁ (442 nm) was not affected. A KCN-sensitive (I₅₀ = 5 μM) cytochrome bb and a KCN-resistant (I₅₀ = 450 μM) cytochrome ba quinol oxidases were separated by ion exchange chromatography.     

Influence of the phosphine arrangement on the reactivity of palladium(II) and platinum(II) polyphosphine complexes with copper(I) chloride

The distorted square-planar complexes [Pd(PNHP)Cl]Cl (1) (PNHP = bis[2-(diphenylphosphino)ethyl]amine), [M(P₃)Cl]Cl [P₃ = bis[2-(diphenylphosphino)ethyl]phenylphosphine; M = Pd (2), Pt (3)] and [Pt(NP₃)Cl]Cl (5) (NP₃ = tris[2-(diphenylphosphino)ethyl]amine), coexisting in the later case with a square-pyramidal arrangement, react with one equivalent of CuCl to give the mononuclear heteroionic systems [M(L)Cl](CuCl₂) [L = PNHP, M = Pd (1a); L = P₃, M = Pd (2a), Pt (3a); L = NP₃, M = Pt (5a)]. The crystal structure of 3a confirms that Pt(II) retains the distorted square-planar geometry of 3 in the cation with P₃ acting as tridentate chelating ligand, the central P atom being trans to one chloride. The counter anion is a nearly linear dichlorocuprate(I) ion. However, the five-coordinate complexes [Pd(NP₃)Cl]Cl (4), [M(PP₃)Cl]Cl (M = Pd (6), Pt (7); PP₃ = tris[2-(diphenylphosphino)ethyl] phosphine) containing three fused five-membered chelate rings undergo a ring-opening by interaction with one (4, 6, 7) and two (6, 7) equivalents of CuCl with formation of neutral MCu(L)Cl₃ [L = NP₃, M = Pd (4a); L = PP₃, M = Pd (6a), Pt (7a)] and ionic [MCu(PP₃)Cl₂](CuCl₂) [M = Pd (6b), Pt (7b)] compounds, respectively. The heteronuclear systems were shown by ³¹P NMR to have structures where the phosphines are acting as tridentate chelating ligands to M(II) and monodentate bridging to Cu(I). Further additions of CuCl to the neutral species 6a and 7a in a 1:1 ratio resulted in the achievement of the ionic complexes 6b and 7b with ions as counter anions. It was demonstrated that the formation of heterobimetallic or just mononuclear mixed salt complexes was clearly influenced by the polyphosphine arrangement with the tripodal ligands giving the former compounds. However, complexes [M(NP₃)Cl]Cl constitute one exception and the type of reaction undergone versus CuCl is a function of the d⁸ metal centre.     

[Hg(9-methyl-1-deazapurine)2](NO3)2 · H2O: a complex with a distorted hexagonal bipyramidal metal ion coordination sphere

Reaction of 9-methyl-1-deazapurine (9-MeDP) with Hg(CF₃COO)₂ in the presence of NaNO₃ yields the title compound [Hg(9-MeDP)₂](NO₃)₂ · H₂O with the two 9-MeDP ligands bound to the metal ion via their N7 positions. The X-ray structure is reported: monoclinic, P2₁/c (no. 14), a = 5.4015(11), b = 20.467(4), c = 17.775(4) Å, β = 97.00(3)°, V = 1950.4(7) ų, Z = 4. Hg is eight-coordinate with two trans-oriented Hg-N bonds (2.073(3) and 2.075(3) Å) and three nearly coplanar, bidentate nitrate moieties (Hg-O: 2.716(3)-2.985(4) Å), leading to a distorted hexagonal bipyramidal environment of the metal ion. Within this structure, the nitrate ions form a honeycomb-like chain structure with Hg^II being positioned inside the combs. This work represents the first report of such geometry for a transition metal ion surrounded by symmetrically bidentate nitrate ions. The corresponding nucleoside, 1-deazapurine 2′-deoxyribonucleoside, also forms a stable 2:1 complex with Hg^II, as was shown by ¹H NMR spectroscopy, making it a potential candidate for incorporation into nucleic acids based on metal-mediated base pairs.     

Challenge from the simple: some caveats in linearization of the Boyle-van't Hoff and Arrhenius plots

Some aspects of proper linearization of the Boyle-van’t Hoff (BVH) relationship for calculation of the osmotically inactive volume v_b, and Arrhenius plot (AP) for the activation energy E_a are discussed. It is shown that the commonly used determination of the slope and the intercept (v_b), which are presumed to be independent from each other, is invalid if the initial intracellular molality m₀ is known. Instead, the linear regression with only one independent parameter (v_b) or the Least Square Method (LSM) with v_b as the only fitting LSM parameter must be applied. The slope can then be calculated from the BVH relationship as the function of v_b. In case of unknown m₀ (for example, if cells are preloaded with trehalose, or electroporation caused ion leakage, etc.), it is considered as the second independent statistical parameter to be found. In this (and only) scenario, all three methods give the same results for v_b and m₀. AP can be linearized only for water hydraulic conductivity (L_p) and solute mobility (ω_s) while water and solute permeabilities P_w ≡ L_pRT and P_s ≡ ω_sRT cannot be linearized because they have pre-exponential factor (RT) that depends on the temperature T.     

Secondary ligand-metal interactions in rhodium(III) and iridium(III) phosphoramidite complexes

The synthesis, characterization, and application in asymmetric catalytic cyclopropanation of Rh(III) and Ir(III) complexes containing (S_a,R_C,R_C)-O,O′-[1,1′-binaphthyl-2,2′-diyl]-N,N′-bis[1-phenyl-ethyl]phosphoramidite (1) are reported. The X-ray structures of the half-sandwich complexes [MCl₂(C₅Me₅)(1,κP)] (M = Rh, 2a; M = Ir, 2b) show that the metal-phosphoramidite bond is significantly shorter in the Ir(III) analog. Chloride abstraction from 2a (with CF₃SO₃SiMe₃ or with CF₃SO₃Me) and from 2b (with AgSbF₆) gives the cationic species [MCl(C₅Me₅)(1,2-η-1,κP)]⁺ (M = Rh, 3a; M = Ir, 3b), which display a secondary interaction between the metal and a dangling phenethyl group (NCH(CH₃)Ph) of the phosphoramidite ligand, as indicated by NMR spectroscopic studies. Complexes 3a and 3b slowly decompose in solution. In the case of 3b, the binuclear species [Ir₂Cl₃(C₅Me₅)₂]⁺ is slowly formed, as indicated by an X-ray study. Preliminary catalytic tests showed that 3a cyclopropanates styrene with moderate yield (35%) and diastereoselectivity (70:30 trans:cis ratio) and with 32% ee (for the trans isomer).