Dissimilar responses of fungal and bacterial communities to soil transplantation simulating abrupt climate changes

Both fungi and bacteria play essential roles in regulating soil carbon cycling. To predict future carbon stability, it is imperative to understand their responses to environmental changes, which is subject to large uncertainty. As current global warming is causing range shifts toward higher latitudes, we conducted three reciprocal soil transplantation experiments over large transects in 2005 to simulate abrupt climate changes. Six years after soil transplantation, fungal biomass of transplanted soils showed a general pattern of changes from donor sites to destination, which were more obvious in bare fallow soils than in maize cropped soils. Strikingly, fungal community compositions were clustered by sites, demonstrating that fungi of transplanted soils acclimatized to the destination environment. Several fungal taxa displayed sharp changes in relative abundance, including Podospora, Chaetomium, Mortierella and Phialemonium. In contrast, bacterial communities remained largely unchanged. Consistent with the important role of fungi in affecting soil carbon cycling, 8.1%–10.0% of fungal genes encoding carbon‐decomposing enzymes were significantly (p < 0.01) increased as compared with those from bacteria (5.7%–8.4%). To explain these observations, we found that fungal occupancy across samples was mainly determined by annual average air temperature and rainfall, whereas bacterial occupancy was more closely related to soil conditions, which remained stable 6 years after soil transplantation. Together, these results demonstrate dissimilar response patterns and resource partitioning between fungi and bacteria, which may have considerable consequences for ecosystem‐scale carbon cycling.     

Vermicompost derived from mushroom residues improves soil C/P cycling,bacterial community, and fungal abundance

The utilization of agricultural waste organic materials through composting technology has gained significant traction in agricultural production as an effective means of crop nutrient management. However, the differences in the impact of organic amendments prepared by traditional composting and vermicomposting on soil properties still deserve further research. Based on field experiments conducted in greenhouse, compared to chemical fertilizer treatments as control, we utilized traditional compost (OF) and vermicompost (VcF) derived from agricultural organic waste edible mushroom bran and cow manure (2:8). Variations in soil physiochemical properties, activities of soil enzymes related C and P cycling, abundances and diversities of bacterial 16S rRNA and fungal ITS gene at total DNA level were analyzed. Both compost treatments enhanced soil organic carbon, soil total phosphorus, and soil available P content significantly and also increased the activities of soil α-glucosidase, β-glucosidase, acid phosphomonoesterase, and alkaline phosphomonoesterase significantly. The above results suggested that soil C and P transformations were stimulated effectively by both organic amendments. OF and VcF increased the fungal ITS absolute abundances significantly while diversity indices of soil bacterial community increased significantly under both treatments. Correlation analysis indicated that bacterial community composition was strongly correlated with several soil property indexes while fungal community composition was only significantly correlated with soil total phosphorous content. In conclusion, similar to traditional compost, vermicompost significantly improved soil nutrient cycling (especially C and P aspects). In terms of soil microbes, bacteria and fungi showed different responding mechanism to vermicompost: bacteria adjust microbial structure, while fungi tend to proliferated. In consideration of the advantages of vermicompost in technology and economic cost, it could be applied in the subsequent agricultural production more frequently.     

Drought and its legacy modulate the post‐fire recovery of soil functionality and microbial community structure in a Mediterranean shrubland

The effects of drought on soil dynamics after fire are poorly known, particularly its long‐term (i.e., years) legacy effects once rainfall returns to normal. Understanding this is particularly important for nutrient‐poor soils in semi‐arid regions affected by fire, in which rainfall is projected to decrease with climate change. Here, we studied the effects of post‐fire drought and its legacy on soil microbial community structure and functionality in a Cistus‐Erica shrubland (Spain). Rainfall total and patterns were experimentally modified to produce an unburned control (natural rainfall) and four burned treatments: control (natural rainfall), historical control (long‐term average rainfall), moderate drought (percentile 8 historical rainfall, 5 months of drought per year), and severe drought (percentile 2, 7 months of drought). Soil nutrients and microbial community composition (ester‐linked fatty acid approach) and functionality (enzyme activities and C mineralization rate) were monitored during the first 4 years after fire under rainfall treatments, plus two additional ones without them (six post‐fire years). We found that the recovery of burned soils was lower under drought. Post‐fire drought increased nitrate in the short term and reduced available phosphorus, exchangeable potassium, soil organic matter, enzyme activities, and carbon mineralization rate. Moreover, drought decreased soil total microbial biomass and fungi, with bacteria becoming relatively more abundant. Two years after discontinuing the drought treatments, the drought legacy was significant for available phosphorus and enzyme activities. Although microbial biomass did not show any drought legacy effect, the proportion of fungi and bacteria (mainly gram‐positive) did, being lower and higher, respectively, in former drought‐treated plots. We show that drought has an important impact on soil processes, and that some of its effects persist for at least 2 years after the drought ended. Therefore, drought and its legacy effects can be important for modeling biogeochemical processes in burned soils under future climate change.     

Termination of belowground C allocation by trees alters soil fungal and bacterial communities in a boreal forest

The introduction of photosynthates through plant roots is a major source of carbon (C) for soil microbial biota and shapes the composition of fungal and bacterial communities in the rhizosphere. Although the importance of this process, especially to ectomycorrhizal fungi, has been known for some time, the extent to which plant belowground C allocation controls the composition of the wider soil community is not understood. A tree-girdling experiment enabled studies of the relationship between plant C allocation and microbial community composition. Girdling involves cutting the phloem of trees to prevent photosynthates from entering the soil. Four years after girdling, fungal and bacterial communities were characterized using DNA-based profiles and cloning and sequencing. Data showed that girdling significantly altered fungal and bacterial communities compared with the control. The ratio of ectomycorrhizal to saprobic fungal sequences significantly decreased in girdled treatments, and this decline was found to correlate with the fungal phospholipid fatty acid biomarker 18:2ω6,9. Bacterial communities also varied in the abundance of the two dominant phyla Acidobacteria and Alphaproteobacteria . Concomitant changes in fungal and bacterial communities suggest linkages between these two groups and point toward plant belowground C allocation as a key determinant of microbial community composition.     

Response of fungal, bacterial and ureolytic communities to synthetic sheep urine deposition in a grassland soil

In grazed pastures, soil pH is raised in urine patches, causing dissolution of organic carbon and increased ammonium and nitrate concentrations, with potential effects on the structure and functioning of soil microbial communities. Here we examined the effects of synthetic sheep urine (SU) in a field study on dominant soil bacterial and fungal communities associated with bulk soil and plant roots (rhizoplane), using culture-independent methods and a new approach to investigate the ureolytic community. A differential response of bacteria and fungal communities to SU treatment was observed. The bacterial community showed a clear shift in composition after SU treatment, which was more pronounced in bulk soil than on the rhizoplane. The fungal community did not respond to SU treatment; instead, it was more affected by the time of sampling. Redundancy analysis of data indicated that the variation in the bacterial community was related to change in soil pH, while fungal community was more responsive to dissolution of organic carbon. Like the universal bacterial community, the ureolytic community was influenced by the SU treatment. However, different taxa within the ureolytic bacterial community responded differentially to the treatment. The ureolytic community comprised of members from a range of phylogenetically different taxa and could be used to measure the effect of environmental perturbations on the functional diversity of natural ecosystems.     

Soils from intercropped fields have a higher capacity to suppress black root rot in cassava,caused by Scytalidium lignicola

The objective of the present study was to evaluate the natural suppressive capacity of soils from forest, and monocropping and intercropping systems, against root rot, caused by Scytalidium lignicola, in a greenhouse experiment. We used soils from a tropical dry forest (FOR) and two intercropping and two monoculture systems. The first intercrop was maize and beans (CORNCOWP), and the second intercrop was cassava, pigeon peas and beans (CASPIGPCOWP). The first monoculture was beans, and the second was passion fruit. The intercropping soils showed a higher capacity to suppress black root rot in cassava than the monoculture because such soils were able to reduce disease severity by about 50%. Bean soil in the monoculture showed less microbial biomass carbon than in the intercrop, with means of 10.05 and 38.2 mg/kg, respectively. The higher density of bacteria and fungal populations, microbial biomass, urease and arylsulphatase activities correlated with a decrease in disease severity. Soils from the intercrops produced changes in soil quality, primarily in the population and density of microorganisms, enzymatic activities, total organic carbon and nutrients, reducing disease severity in cassava plants. These effects were validated by multivariate principal component analysis and showed three distinct groups: one FOR, one intercropping and one monocropping. The majority of vectors were in the direction of FOR and intercropping soils. We have provided some of the first data related to the beneficial effects of intercropping on the suppression of black root rot in cassava, which is validated through different attributes.     

The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide

One of the major factors associated with global change is the ever-increasing concentration of atmospheric CO₂. Although the stimulating effects of elevated CO₂ (eCO₂) on plant growth and primary productivity have been established, its impacts on the diversity and function of soil microbial communities are poorly understood. In this study, phylogenetic microarrays (PhyloChip) were used to comprehensively survey the richness, composition and structure of soil microbial communities in a grassland experiment subjected to two CO₂ conditions (ambient, 368 p.p.m., versus elevated, 560 p.p.m.) for 10 years. The richness based on the detected number of operational taxonomic units (OTUs) significantly decreased under eCO₂. PhyloChip detected 2269 OTUs derived from 45 phyla (including two from Archaea), 55 classes, 99 orders, 164 families and 190 subfamilies. Also, the signal intensity of five phyla (Crenarchaeota, Chloroflexi, OP10, OP9/JS1, Verrucomicrobia) significantly decreased at eCO₂, and such significant effects of eCO₂ on microbial composition were also observed at the class or lower taxonomic levels for most abundant phyla, such as Proteobacteria, Firmicutes, Actinobacteria, Bacteroidetes and Acidobacteria, suggesting a shift in microbial community composition at eCO₂. Additionally, statistical analyses showed that the overall taxonomic structure of soil microbial communities was altered at eCO₂. Mantel tests indicated that such changes in species richness, composition and structure of soil microbial communities were closely correlated with soil and plant properties. This study provides insights into our understanding of shifts in the richness, composition and structure of soil microbial communities under eCO₂ and environmental factors shaping the microbial community structure.     

秸秆颗粒还田对黑土土壤酶活性及细菌群落的影响

为探讨不同玉米秸秆颗粒还田量对黑土生物学特性及细菌群落的影响,在内蒙古兴安盟扎赉特旗农业科技示范园试验地设置秸秆0%还田,还田量0kg/hm^2(CK)、秸秆60%还田,还田量4500kg/hm^2(JG1)、秸秆70%还田,5250kg/hm^2(JG2)、秸秆80%还田,6000kg/hm^2(JG3)、秸秆90%还田,6750kg/hm^2(JG4)和秸秆100%还田,7500kg/hm^2(JG5)6个处理,通过连续2年大田试验,研究土壤蔗糖酶、脲酶、过氧化氢酶、碱性磷酸酶活性、微生物生物量碳氮以及细菌群落的变化。结果表明:秸秆还田能够增加土壤蔗糖酶(3.29%—32.12%),脲酶(5.32%—52.66%),过氧化氢酶(0.60%—27.11%),碱性磷酸酶的活性(10.89%—64.20%),土壤微生物生物量碳(1.32%—7.07%)、氮(16.35%—80.46%)含量;秸秆施入土壤也提高了黑土变形菌门和厚壁菌门相对丰度,提高了土壤固氮、分解养分及抵御病害能力,并降低了放线菌门相对丰度,降低了土壤病害发生概率,还出现了具有固氮、吸磷、改良土壤特性的新细菌,可见玉米秸秆还田具有重要的生态学意义,可在一定程度上增加细菌数量和种类多样性,进而使土壤系统向稳定健康的方向发展。综合研究结果在本试验条件下,以6750kg/hm^2为较适宜的玉米秸秆颗粒还田量。     

土壤微生物群落构建理论与时空演变特征

土壤微生物作为陆地生态系统的重要组成部分,直接或间接地参与几乎所有的土壤生态过程,在物质循环、能量转换以及污染物降解等过程中都发挥着重要作用。对土壤微生物时空演变规律及其形成机制的研究,不仅是微生物演变和进化的基础科学问题,也是预测微生物及其所介导的生态功能对环境条件变化响应、适应和反馈的理论依据。讨论了土壤微生物群落的定义、测度方法和指标,认为群落是联系动植物宏观生态学与微生物生态学的基础,群落构建机制是宏观和微观生态学都需要研究的核心科学问题;从生态学的群落构建理论出发,阐述了包括生态位理论/中性理论、过程理论和多样性-稳定性理论在土壤微生物时空演变研究中的应用,以及微生物群落在时间和空间上的分布特征及其尺度效应;确立了以微生物群落构建理论为基础、不同时空尺度下土壤微生物群落演变特征为主要内容的微生物演变研究的基本框架。     

内生真菌感染对禾草宿主生境土壤特性和微生物群落的影响

以羊草(Leymus chinensis)-内生真菌共生体为研究对象, 分别在野外样地和室内盆栽两种实验条件下研究了内生真菌感染对土壤特性和微生物群落结构的影响。结果显示：在处理时间较长并伴随有枯落物分解的羊草样地中, 内生真菌感染促进了土壤氮(N)的积累, 提高了30天培养时间内土壤初始碳(C)矿化速率和前3天土壤矿化量和土壤矿化总量; 而在处理时间较短且没有地上枯落物分解的盆栽羊草中, 内生真菌感染对土壤的C、N含量及C矿化均无显著影响。无论是野外样地还是室内盆栽实验, 内生真菌感染均未引起土壤微生物磷脂脂肪酸种类的变化, 但内生真菌感染均有提高土壤微生物生物量的趋势, 内生真菌显著增加了盆栽羊草土壤中细菌、革兰氏阴性细菌、真菌磷脂脂肪酸含量和磷脂脂肪酸总量, 增加了羊草样地土壤中革兰氏阳性细菌和放线菌的磷脂脂肪酸含量。总体看来, 内生真菌感染能够改变土壤N积累和C矿化率, 并且改变土壤中微生物群落的结构, 这有助于进一步认识内生真菌与羊草之间的共生关系及其在生态系统C、N循环中所起的作用。     

Anthropogenic N deposition alters soil organic matter biochemistry and microbial communities on decaying fine roots

Fine root litter is a primary source of soil organic matter (SOM), which is a globally important pool of C that is responsive to climate change. We previously established that ~20 years of experimental nitrogen (N) deposition has slowed fine root decay and increased the storage of soil carbon (C; +18%) across a widespread northern hardwood forest ecosystem. However, the microbial mechanisms that have directly slowed fine root decay are unknown. Here, we show that experimental N deposition has decreased the relative abundance of Agaricales fungi (?31%) and increased that of partially ligninolytic Actinobacteria (+24%) on decaying fine roots. Moreover, experimental N deposition has increased the relative abundance of lignin‐derived compounds residing in SOM (+53%), and this biochemical response is significantly related to shifts in both fungal and bacterial community composition. Specifically, the accumulation of lignin‐derived compounds in SOM is negatively related to the relative abundance of ligninolytic Mycena and Kuehneromyces fungi, and positively related to Microbacteriaceae. Our findings suggest that by altering the composition of microbial communities on decaying fine roots such that their capacity for lignin degradation is reduced, experimental N deposition has slowed fine root litter decay, and increased the contribution of lignin‐derived compounds from fine roots to SOM. The microbial responses we observed may explain widespread findings that anthropogenic N deposition increases soil C storage in terrestrial ecosystems. More broadly, our findings directly link composition to function in soil microbial communities, and implicate compositional shifts in mediating biogeochemical processes of global significance.     

Climate change alters ecological strategies of soil bacteria

The timing and magnitude of rainfall events are expected to change in future decades, resulting in longer drought periods and larger rainfall events. Although microbial community composition and function are both sensitive to changes in rainfall, it is unclear whether this is because taxa adopt strategies that maximise fitness under new regimes. We assessed whether bacteria exhibited phylogenetically conserved ecological strategies in response to drying‐rewetting, and whether these strategies were altered by historical exposure to experimentally intensified rainfall patterns. By clustering relative abundance patterns, we identified three discrete ecological strategies and found that tolerance to drying‐rewetting increased with exposure to intensified rainfall patterns. Changes in strategy were primarily due to changes in community composition, but also to strategy shifts within taxa. These moisture regime‐selected ecological strategies may be predictable from disturbance history, and are likely to be linked to traits that influence the functional potential of microbial communities.     

不同海拔对福建戴云山黄山松林土壤微生物生物量和土壤酶活性的影响

温度、水分等多种环境因子随海拔梯度发生变化,会直接或间接影响土壤微生物生物量、群落结构以及土壤酶活性。然而关于中亚热带地区山地森林生态系统土壤酶活性变化响应的研究还是相对匮乏。戴云山山脉是中国最大的黄山松种质基因基地,本研究以中亚热带戴云山1300 m (L)、1450 m(M)、1600 m(H)的黄山松(Pinus taiwanensis)为研究对象,探究不同海拔下土壤微生物生物量和土壤酶活性如何变化及驱动土壤酶活性变化的主要的环境因子。结果表明:海拔梯度对淀积层(B)土壤的酶活性影响整体较小,在淋溶层(A)土壤中,随海拔升高,纤维素水解酶(β-葡糖苷酶(βG)、纤维素水解酶(CBH))显著降低,因此使土壤可溶性碳(DOC)和微生物生物量碳(MBC)随海拔升高有下降趋势。尽管酸性磷酸酶活性(ACP)随海拔升高显著增加,然而有效磷(AP)无显著变化。此外随海拔升高,微生物生物量氮(MBN)、微生物生物量磷(MBP)显著降低。冗余分析(RDA)结果发现,MBP和碳/氮比(C/N)是影响A层中土壤酶活性变化最重要的因子,而在B层中,土壤含水量(WC)和MBP对土壤酶活性起主要作用。研究表明,磷限制的亚热带地区,无机磷很容易被铁铝固定,MBP可以对土壤中的有效磷进行补充,成为影响本地区酶活性的主要因素。随海拔海拔降低,土壤有机碳、氮分解相关酶活性较高,从而加速了土壤碳、氮周转。因此,探究不同海拔梯度酶活性变化为预测中亚热带亚山地森林生态系统土壤碳、氮、磷养分循环提供了重要的理论依据,也为戴云山自然保护区黄山松林管理提供一定的科学依据。     

模拟降雨变化对古尔班通古特沙漠土壤养分及酶活性的影响

土壤酶参与土壤系统的养分循环过程,是联系植物和土壤养分的关键纽带。土壤酶活性对降水格局变化响应敏感,这种响应对于缺水且养分贫瘠的荒漠生态系统显得尤为重要。然而,早春积雪完全融化后首次降雨时间及降雨量如何影响土壤养分及土壤酶活性还鲜见相关报道。以新疆古尔班通古特沙漠为研究区,在早春积雪完全融化后,设置3个首次降雨时间(积雪完全融化后第10天、20天和30天)和3个降雨梯度(5 mm、10 mm和15 mm),于植物生长旺季采集土壤样品,研究土壤养分含量和土壤酶活性的响应特征。结果表明：积雪完全融化后不同首次降雨时间下5mm降雨处理以及积雪完全融化后第30天下各降雨量处理对土壤养分和酶活性影响不显著。积雪完全融化后第10天,随降雨量增加,土壤全碳呈显著先下降后增加趋势,全钾呈显著增加趋势,而土壤微生物量碳呈显著降低趋势;积雪完全融化后第20天,随降雨量增加,速效氮、土壤蔗糖酶活性、土壤微生物量碳氮呈先下降后增加趋势,土壤全碳和多酚氧化酶活性显著下降,土壤全钾和碱性磷酸酶活性显著增加。模拟10 mm降雨,随首次降雨时间推迟,土壤全氮、速效氮、速效磷、土壤蔗糖酶活性和土壤微生物量碳呈增加趋势;...     

环丙沙星对土壤微生物量碳和土壤微生物 群落碳代谢多样性的影响

采用氯仿熏蒸浸提法和Biolog法,分析环丙沙星作用下的土壤微生物量碳和微生物群落碳代谢多样性,以揭示环丙沙星在环境中残留对土壤微生物学性状的影响.结果表明,环丙沙星(wCIP≥0.1 μg/g)对土壤微生物量碳含量影响显著(P＜0.05),土壤中环丙沙星浓度愈高,微生物量碳含量愈低,100μg/g的环丙沙星处理使土壤微生物量碳含量下降58.69％.环丙沙星对土壤微生物群落碳代谢功能影响显著,环丙沙星降低了土壤微生物对碳水化合物、羧酸、氨基酸、聚合物、酚类和胺类的碳源利用率;环丙沙星(wCIP≥0.1 μg/g)显著影响了土壤微生物群落碳源代谢强度和代谢多样性,但不同浓度的环丙沙星对土壤微生物群落碳代谢功能的影响不同,0.1、1、10 μg/g的环丙沙星处理对土壤微生物群落碳代谢功能的影响主要表现在处理前期(用药第7天、21天),这种影响在处理后期(用药第35天)表现不明显,100μg/g的环丙沙星在用药的前期和后期均显著影响土壤微生物群落碳代谢功能,土壤中环丙沙星积累到该浓度可能对土壤微生物群落碳代谢功能产生难以逆转的长期影响.     

Responses of soil bacterial and fungal communities to reciprocal transfers of soil between adjacent coniferous forest and meadow vegetation in the Cascade Mountains of Oregon

Little information exists on the responses of soil fungal and bacterial communities in high elevation coniferous forest/open meadow ecosystems of the northwest United States of America to treatments that impact vegetation and soil conditions. An experiment was conducted in which soil cores were reciprocally transplanted between immediately adjacent forests and meadows at two high elevation (∼1,600 m) sites (Carpenter and Lookout) in the H.J. Andrews Experimental Forest located in the Cascade Mountains of Oregon. Half of the cores were placed in PVC pipe (closed) to prevent new root colonization, whereas the other cores were placed in mesh bags (open) to allow recolonization by fine roots. A duplicate set of open and closed soil cores was not transferred between sites and was incubated in place. After 2 year, soil cores were removed and changes in fungal and bacterial biomasses determined using light microscopy, and changes in microbial community composition determined by PLFA analysis, and by length heterogeneity PCR of the internal transcribed spacer region of fungal ribosomal DNA. At both sites soil microbial community structures had responded to treatments after 2 year of incubation. At Carpenter, both fungal and bacterial community structures of forest soil changed significantly in response to transfer from forest to meadow, with the shift in fungal community structure being accompanied by a significant decrease in the PLFA biomarker of fungal biomass,18:2ω6,9. At Lookout, both fungal and bacterial community structures of forest soil changed significantly in response to open versus closed core treatments, with the shift in the fungal community being accompanied by a significant decrease in the 18:2ω6,9 content of closed cores, and the shift in the bacterial community structure being accompanied by a significant increase in bacterial biomass of closed cores. At both sites, fungal community structures of meadow soils changed differently between open and closed cores in response to transfer to forest, and were accompanied by increases in the18:2ω6,9 content of open cores. Although there were no significant treatment effects on the bacterial community structure of meadow soil at either site, bacterial biomass was significantly higher in closed versus open cores regardless of transfer.     

不同林龄杉木林土壤细菌群落结构与土壤酶活性变化研究

探究不同林龄杉木人工纯林土壤中的微生物的群落演变与结构特征与酶活性变化,为杉木人工林可持续经营管理提供依据。以福建省南平市的五片不同林龄杉木林表层土壤作为研究对象,通过16SrDNA测定细菌的群落组成,分析与土壤质量密切相关的四种土壤酶活性变化,揭示细菌群落与土壤酶活性的变化机理。结果表明,微生物的多样性指数与OTU都随着林龄的增加而增加,且幼龄林、中龄林、近熟林、成熟林土壤微生物结构差异较大;不同林龄杉木人工林中包含了29个细菌门,其中酸杆菌门与变形菌门为优势菌群,根据各种群相对丰度变化以及冗余分析,放线菌门、浮霉菌门与疣微菌门等均随林龄增长出现较大变化,且与土壤可溶性有机质以及速效养分有显著相关性（P<0.05）,说明这几种细菌群落对土壤养分变化较敏感;土壤养分变化会影响土壤酶活性,蔗糖酶与全碳呈显著正相关（P<0.05）,与速效钾呈显著负相关（P<0.05）,与放线菌门呈极显著负相关（P<0.01）。脲酶与速效氮呈显著负相关（P<0.05）,脲酶与变形菌门、绿弯菌门、放线菌门、硝化螺旋菌门以及拟杆菌门均存在较强相关性。综上,不同的土壤细菌种群与酶活性对各养分变化的响应程度不一,细菌群落结构与酶活性能反映不同林龄杉木林土壤的质量变化,适量延长杉木人工林种植年限有益于土壤质量恢复。本研究结果对指导杉木人工林优质经营有重要意义。     

The role of indigenous bacterial and fungal soil populations in the biodegradation of crude oil in a desert soil

The biodegradation capacity of indigenous microbial populations was examined in a desert soil contaminated with crude oil. To evaluate biodegradation, soil samples supplemented with 5, 10 or 20% (w/w) of crude oil were incubated for 90 days at 30 °C. The effect of augmentation of the soil with vermiculite (50% v/v) as a bulking agent providing increased surface/volume ratio and improved soil aeration was also tested. Maximal biodegradation (91%) was obtained in soil containing the highest concentration of crude oil (20%) and supplemented with vermiculite; only 74% of the oil was degraded in samples containing the same level of crude oil but lacking vermiculite. Gas chromatograms of distilled fractions of crude oil extracted from the soil before and after incubation demonstrated that most of the light and part of the intermediate weight fractions initially present in the oil extracts could not be detected after incubation. Monitoring of microbial population densities revealed an initial decline in bacterial viable counts after exposure to oil, presumably as a result of the crude oil’s toxicity. This decline was followed by a steep recovery in microbial population density, then by a moderate increase that persisted until the end of incubation. By contrast, the inhibitory effect of crude oil on the fungal population was minimal. Furthermore, the overall increased growth response of the fungal population, at all three levels of contamination, was about one order of magnitude higher than that of the bacterial population.