Attachment of noncognate chromophores to CpcA of Synechocystis sp. PCC 6803 and Synechococcus sp. PCC 7002 by heterologous expression in Escherichia coli

Many cyanobacteria use brilliantly pigmented, multisubunit macromolecular structures known as phycobilisomes as antenna to enhance light harvesting for photosynthesis. Recent studies have defined the enzymes that synthesize phycobilin chromophores as well as many of the phycobilin lyase enzymes that attach these chromophores to their cognate apoproteins. The ability of the phycocyanin α-subunit (CpcA) to bind alternative linear tetrapyrrole chromophores was examined through the use of a heterologous expression system in Escherichia coli. E. coli strains produced phycocyanobilin, phytochromobilin, or phycoerythrobilin when they expressed 3Z-phycocyanobilin:ferredoxin oxidoreductase (PcyA), 3Z-phytochromobilin:ferredoxin oxidoreductase (HY2) from Arabidopsis thaliana, or phycoerythrobilin synthase (PebS) from the myovirus P-SSM4, respectively. CpcA from Synechocystis sp. PCC 6803 or Synechococcus sp. PCC 7002 was coexpressed in these strains with the phycocyanin α-subunit phycocyanobilin lyase, CpcE/CpcF, or the phycoerythrocyanin α-subunit phycocyanobilin isomerizing lyase, PecE/PecF, from Noctoc sp. PCC 7120. Both lyases were capable of attaching three different linear tetrapyrrole chromophores to CpcA; thus, up to six different CpcA variants, each with a unique chromophore, could be produced with this system. One of these chromophores, denoted phytoviolobilin, has not yet been observed naturally. The recombinant proteins had unexpected and potentially useful properties, which included very high fluorescence quantum yields and photochemical activity. Chimeric lyases PecE/CpcF and CpcE/PecF were used to show that the isomerizing activity that converts phycocyanobilin to phycoviolobilin resides with PecF and not PecE. Finally, spectroscopic properties of recombinant phycocyanin R-PCIII, in which the CpcA subunits carry a phycoerythrobilin chromophore, are described.     

Expansion of bilin-based red light sensors in the subaerial desert cyanobacterium Nostoc flagelliforme

Light is the crucial environmental signal for desiccation-tolerant cyanobacteria to activate photosynthesis and prepare for desiccation at dawn. However, the photobiological characteristics of desert cyanobacteria adaptation to one of the harshest habitats on Earth remain unresolved. In this study, we surveyed the genome of a subaerial desert cyanobacterium Nostoc flagelliforme and identified two phytochromes and seven cyanobacteriochromes (CBCRs) with one or more bilin-binding GAF (cGMP phosphodiesterase/adenylyl cyclase/FhlA) domains. Biochemical and spectroscopic analyses of 69 purified GAF-containing proteins from recombinant phycocyanobilin (PCB), biliverdin or phycoerythrobilin-producing Escherichia coli indicated that nine of these proteins bind chromophores. Further investigation revealed that 11 GAFs form covalent adducts responsive to near-UV and visible light: eight GAFs contained PCB chromophores, three GAFs contained biliverdin chromophores and one contained the PCB isomer, phycoviolobilin. Interestingly, COO91_03972 is the first-ever reported GAF-only CBCR capable of sensing five wavelengths of light. Bioinformatics and biochemical analyses revealed that residue P132 of COO91_03972 is essential for chromophore binding to dual-cysteine CBCRs. Furthermore, the complement of N. flagelliforme CBCRs is enriched in red light sensors. We hypothesize that these sensors are critical for the acclimatization of N. flagelliforme to weak light environments at dawn.     

Conjectures and reveries

The origin of photosynthesis is speculated to have involved carbon dioxide and self-replicating iron-rich clays. The later evolution of photosynthesis is considered to have undergone four distinct phases: (1) The photoreduction of carbon dioxide by ferrous ion to form oxalate and formate. (2) The entry of sulfur into the evolving clay system which led to the formation of acetyl thioesters. The polymerization of the acetyl thioeters led to the formation of quinones. The formation of Fe₂S₂ and Fe₄S₄ cores appeared in this phase. (3) The ability to fix nitrogen characterized the third phase. This led to the formation of pyrrole, flavin, nicotinamide, phycobilins, porphyrins and chlorophyll. (4) Finally, phosphate entered the evolving system.The chromophores evolved from ferrous ion through the quinones, carotenoids, phycobilins to chlorophyll. This evolution of chromophores implies that photosynthesis began in the UV and evolved through the blue, yellow, orange into the red. The electron transport chain evolved from ferrous ion through the Fe₂S₂ and Fe₄S₄ cores to the hemes.     

Picosecond excitation energy transfer of allophycocyanin studied in solution and in crystals

Cyanobacteria perform photosynthesis with the use of large light-harvesting antennae called phycobilisomes (PBSs). These hemispherical PBSs contain hundreds of open-chain tetrapyrrole chromophores bound to different peptides, providing an arrangement in which excitation energy is funnelled towards the PBS core from where it can be transferred to photosystem I and/or photosystem II. In the PBS core, many allophycocyanin (APC) trimers are present, red-light-absorbing phycobiliproteins that covalently bind phycocyanobilin (PCB) chromophores. APC trimers were amongst the first light-harvesting complexes to be crystallized. APC trimers have two spectrally different PCBs per monomer, a high- and a low-energy pigment. The crystal structure of the APC trimer reveals the close distance (~21 Å) between those two chromophores (the distance within one monomer is ~51 Å) and this explains the ultrafast (~1 ps) excitation energy transfer (EET) between them. Both chromophores adopt a somewhat different structure, which is held responsible for their spectral difference. Here we used spectrally resolved picosecond fluorescence to study EET in these APC trimers both in crystallized and in solubilized form. We found that not all closely spaced pigment couples consist of a low- and a high-energy pigment. In ~10% of the cases, a couple consists of two high-energy pigments. EET to a low-energy pigment, which can spectrally be resolved, occurs on a time scale of tens of picoseconds. This transfer turns out to be three times faster in the crystal than in the solution. The spectral characteristics and the time scale of this transfer component are similar to what have been observed in the whole cells of Synechocystis sp. PCC 6803, for which it was ascribed to EET from C-phycocyanin to APC. The present results thus demonstrate that part of this transfer should probably also be ascribed to EET within APC trimers.     

Effect of desiccation on the photosynthesis of seaweeds from the intertidal zone in Honshu, Japan

Intertidal seaweeds are periodically exposed during low tide and thus experience extreme levels of desiccation. The physiological activity of seaweeds changes during this water loss process. This study examined how desiccation affects the photosynthesis and respiration of seaweeds from different intertidal levels, and whether the ability to retain photosynthesis and respiration rates during desiccation varies among these species. Photosynthesis and respiration rates of 12 species of seaweeds were measured under various levels of desiccation, using an infrared CO₂ gas analyzer. High levels of drought negatively affected photosynthesis, while most species showed initial rises in photosynthetic rates. The ability to retain photosynthesis and respiration activities under desiccation conditions varied among species. These physiological responses were not related to the intertidal level at which these species occur, but to their ability to prevent water loss. The species with lower rates of water loss had slower declines in the rate of photosynthesis and respiration.     

Applications of p-hydroxyphenacyl (pHP) and coumarin-4-ylmethyl photoremovable protecting groups

Most applications of photoremovable protecting groups have used o-nitrobenzyl compounds and their (often commercially available) derivatives that, however, have several disadvantages. The focus of this review is on applications of the more recently developed title compounds, which are especially well suited for time-resolved biochemical and physiological investigations, because they release the caged substrates in high yield within a few nanoseconds or less. Together, these two chromophores cover the action spectrum for photorelease from >700 nm to 250 nm.     

Light-induced charge separation in ruthenium based triads - New variations on an old theme

Success with artificial photosynthesis requires control of the photoinduced electron transfer reactions leading to charge-separated states. In this review, some new ideas to optimize such charge-separated states in ruthenium(II) polypyridyl based three-component systems with respect to: (1) long lifetimes and (2) ability to store sufficient energy for catalytic water splitting, are presented. To form long-lived charge-separated states, a manganese complex as electron donor and potential catalyst for water oxidation has been used. The recombination reaction is unusually slow because it occurs deep down in the Marcus normal region as a consequence of the large bond reorganization following the manganese oxidation. For the creation of high energy charge-separated states, a strategy using bichromophoric systems is presented. By consecutive excitations of the two chromophores, the formation of charge-separated states that lie higher in energy than either of the two excited states could in theory be achieved, the first results of which will be discussed in this review.     

Photosynthetic and growth responses of reciprocal hybrids to variation in water and nitrogen availability

? Premise of the study: Fitness of plant hybrids often depends upon the environment, but physiological mechanisms underlying the differential responses to habitat are poorly understood. We examined physiological responses of Ipomopsis species and hybrids, including reciprocal F(1)s and F(2)s, to variation in soil moisture and nitrogen. ? Methods: To examine responses to moisture, we subjected plants to a dry-down experiment. Nitrogen was manipulated in three independent experiments, one in the field and two in common environments. ? Key results: Plants with I. tenuituba cytoplasmic background had lower optimal soil moisture for photosynthesis, appearing better adapted to dry conditions, than plants with I. aggregata cytoplasm. This result supported a prediction from prior studies. The species and hybrids did not differ greatly in physiological responses to nitrogen. An increase in soil nitrogen increased leaf nitrogen, carbon assimilation, integrated water-use efficiency, and growth, but the increases in growth were not mediated primarily by an increase in photosynthesis. In neither the field, nor in common-garden studies, did physiological responses to soil nitrogen differ detectably across plant types, although only I. aggregata and hybrids increased seed production in the field. ? Conclusions: These results demonstrate differences in photosynthetic responses between reciprocal hybrids and suggest that water use is more important than nitrogen in explaining the relative photosynthetic performance of these hybrids compared to their parents.     

Use of a light-induced respiratory transient to measure the optical cross section of photosystem I in chlorella

A method has been developed whereby the magnitude of a transient in O₂ uptake attributable to photosystem (PS) I activity, following single-turnover laser flashes of varying energy, can be used to measure the optical cross section of PSI. As measurements are made under the identical physiological conditions for which the cross section of PSII has previously been determined (AC Ley, DC Mauzerall 1982 Biochim Biophys Acta 680: 96-105), it is now possible to simultaneously measure the cross section of both photosystems in intact, photosynthetically competent cells, without the use of inhibitors or artificial mediators of electron transport. Plots of light-saturation behavior of the respiratory oscillation following pulses at 596 nanometers indicate a mean optical cross section similar to that of PSII at this wavelength, but suggest significant heterogeneity in the cross section of PSI. If this method measures only PSI activity, this result implies that there exist units with different numbers of identical chromophores, or units having populations of chromophores with different absorption spectra.     

ADAPTATION OF PHOTOSYNTHESIS IN LAMINARIA SACCHARINA (PHAEOPHYTA) TO CHANGES IN GROWTH TEMPERATURE1

The effect of growth temperature on photosynthetic metabolism was studied in the kelp Laminaria saccharina (L.) Lamour. Photosynthesis was subject to phenotypic adaptation, with almost constant photosynthetic rates being achieved at growth temperatures between 0 and 20° C. This response involved: (1) an inverse relationship between growth temperature and photosynthetic capacity, (2) a reduction in the Q₁₀ value for photosynthesis of L. saccharina grown at 0 and 5° C compared with 10, 15 and 20° C grown sporophytes, and (3) an acquired tolerance of photosynthesis to temperatures between 15–25° C (which inhibited photosynthesis in 0 and 5° C grown L. saccharina) in sporophytes grown at 10, 15 and 20° C. The physiological basis of these adaptations is discussed in terms of observed changes in activities and kinetics of the Calvin cycle enzyme ribulose-1, 5-bisphosphate carboxylase (oxygenase) and efficiency of light harvesting-electron transport systems.     

Specific leaf area relates to the differences in leaf construction cost,photosynthesis, nitrogen allocation,and use efficiencies between invasive and noninvasive alien congeners

Comparisons between invasive and native species may not characterize the traits of invasive species, as native species might be invasive elsewhere if they were introduced. In this study, invasive Oxalis corymbosa and Peperomia pellucida were compared with their respective noninvasive alien congeners. We hypothesized that the invasive species have higher specific leaf (SLA) than their respective noninvasive alien congeners, and analyzed the physiological and ecological consequences of the higher SLA. Higher SLA was indeed the most important trait for the two invaders, which was associated with their lower leaf construction cost, higher nitrogen (N) allocation to photosynthesis and photosynthetic N use efficiency (PNUE). The higher N allocation to photosynthesis of the invaders in turn increased their PNUE, N content in photosynthesis, biochemical capacity for photosynthesis, and therefore light-saturated photosynthetic rate. The above resource capture-, use- and growth-related traits may facilitate the two invaders' invasion, while further comparative studies on a wider range of invasive and noninvasive congeners are needed to understand the generality of this pattern and to fully assess the competitive advantages afforded by these traits.     

Integrated Application of Physiological and Molecular Methods to Forecast Determinative Morphogenetic Events in Tissue Cultured Tobacco (<Emphasis Type="Italic">Nicotiana tabacum</Emphasis> L. cv Samsun) Leaf Discs

The purpose of this study was to search for physiological parameters that provide an early indication of the morphogenetic response of leaf disc explants to different tissue culture-level manipulations in order to design an accelerated optimisation process for this technology. Tobacco (Nicotiana tabacum L. cv. Samsun) was chosen as model in our studies, because this is still one of the most widely used species in experimental plant biology and detailed knowledge is available from its tissue culture system. Large numbers of physiological markers at the whole plant level (rates of photosynthesis and respiration) and cellular level ‘fitness’ (degree of DNA methylation) were measured together with the concentrations of the most abundant metabolites in photosynthetic carbohydrate metabolism, ATP and protein synthesis in leaf discs induced either for callus development or for shoot differentiation. As a result of the above examinations, we are able to show that the efficiency of photosynthesis, the rate of respiration and the degree of DNA methylation can be used as early markers for the changes that precede the appearance of in vitro morphogenesis. By examining these parameters, we were able to predict early ontogenesis (within 48 h) and the optimal concentrations of growth regulators needed to achieve either shoot differentiation or callus development. Collaborator via a fellowship under the OECD Co-operative Research Programme: Biological Resource Management for Sustainable Agriculture Systems     

Effects of Variations in Daylength and Temperature on Net Rates of Photosynthesis, Dark Respiration, and Excretion by Isochrysis galbana Parke

The effects of variable daylength and temperature on net rates of photosynthesis, dark respiration, and excretion of a unicellular marine haptophyte, Isochrysis galbana Parke, were examined and related to division rates. Six combinations of daylength (18:6, 12:12, 6:18 light:dark, LD) and temperature (20, 25 C) were used. Daily rates of net photosynthesis were closely correlated to division rates, suggesting a direct relationship, and were maximal when cells were grown at 12:12 LD at both temperatures and 18:6 LD at 20 C. A daylength of 6 hours decreased daily rates by decreasing the time for carbon uptake. Further, cells grown with this daylength had maximal chlorophyll a contents, suggesting a physiological adaptation by photosynthetic units to short light periods. A photoperiod of 18:6 LD at 25 C decreased daily rates of net photosynthesis by reducing the hourly rate of net photosynthesis via an unidentified mechanism. The importance of rates of net dark respiration in controlling daily net photosynthesis was small, with carbon lost during dark periods varying between 4 and 14% of that gained during light periods. Also, the influence of net excretion was small, varying between 1.0 and 5.5% of daily net photosynthesis.     

Influence of low temperatures on the growth and photosynthetic activity of industrial chicory, <Emphasis Type="Italic">Cichorium intybus</Emphasis> L. partim

The cold stress effect on early vigour and photosynthesis efficiency was evaluated for five industrial chicory varieties with contrasting early vigour. The relationships between the growth and physiological parameters were assessed. The varieties were examined at three growth temperatures: 16 (reference), 8 (intermediate) and 4 °C (stress). The effect was measured using physiological processes (growth, photosynthesis, chlorophyll a fluorescence), and pigment content. The analysis of the measured growth parameters (dry leaf and root mass, and leaf area) indicated that temperature had a significant effect on the varieties, but the overall reaction of the varieties was similar with lowering temperatures. The photosynthesis and chlorophyll a fluorescence measurements revealed significant changes for the photosynthesis (maximum net photosynthesis, quantum efficiency, light compensation point and dark respiration) and chlorophyll a fluorescence parameters (photochemical and non-photochemical quenching) with lowering temperatures for Hera and Eva, two extremes in youth growth. No significant differences could be found between the extremes for the different temperatures. The pigment content analysis revealed significant differences at 4 °C in contrast to 16 and 8 °C, especially for the xanthophyll/carotenoid pool, suggesting a protective role. Subsequently, the relationship between the physiological processes was evaluated using principal component analysis. At 4 °C, 2 principal components were detected with high discriminating power for the varieties and similar classification of the varieties as determined in the growth analysis. This provides a preview on the possible relationships between photosynthesis and growth for industrial chicory at low temperatures.     

Evolution of C4 plants: a new hypothesis for an interaction of CO2 and water relations mediated by plant hydraulics

C(4) photosynthesis has evolved more than 60 times as a carbon-concentrating mechanism to augment the ancestral C(3) photosynthetic pathway. The rate and the efficiency of photosynthesis are greater in the C(4) than C(3) type under atmospheric CO(2) depletion, high light and temperature, suggesting these factors as important selective agents. This hypothesis is consistent with comparative analyses of grasses, which indicate repeated evolutionary transitions from shaded forest to open habitats. However, such environmental transitions also impact strongly on plant-water relations. We hypothesize that excessive demand for water transport associated with low CO(2), high light and temperature would have selected for C(4) photosynthesis not only to increase the efficiency and rate of photosynthesis, but also as a water-conserving mechanism. Our proposal is supported by evidence from the literature and physiological models. The C(4) pathway allows high rates of photosynthesis at low stomatal conductance, even given low atmospheric CO(2). The resultant decrease in transpiration protects the hydraulic system, allowing stomata to remain open and photosynthesis to be sustained for longer under drying atmospheric and soil conditions. The evolution of C(4) photosynthesis therefore simultaneously improved plant carbon and water relations, conferring strong benefits as atmospheric CO(2) declined and ecological demand for water rose.     

干旱和复水对大豆(Glycine max)叶片光合及叶绿素荧光的影响

选用河南省大面积种植的大豆品种豫豆29作为实验材料,通过研究逐步干旱和旱后复水条件下大豆叶片光合、叶绿素荧光等指标随土壤水分的动态变化规律,以期为大豆的水分高效利用提供理论依据。研究发现,在土壤相对含水量高于46.5%时,虽然随着土壤相对含水量的下降,豫豆29仍可以保持它的叶片水分状态;豫豆29的叶片净光合速率在土壤水分中等条件下最大,在土壤相对含水量为64.3%时,它比对照组高出11.2%(P<0.01);在实验的第3d,处理组的土壤相对含水量降为46.5%,叶片水势与对照组相比降低了7.2%(P>0.05),净光合速率为对照组的89.6%(P<0.05),但气孔导度却迅速下降为对照组的44.7%(P<0.01),这说明与叶片的光合和水分状况相比,豫豆29的气孔对土壤水分的匮缺更加敏感。复水后,豫豆29叶片的水势、净光合速率、气孔导度和叶绿素荧光等值都可以得到迅速的恢复,并在实验的最后接近对照组的水平,这表明豫豆29的叶片光合在水分胁迫解除后有迅速恢复的能力。     

水分对发状念珠藻生理活性的影响

研究了水分对发状念珠藻(Nostor flagelliforme Born.et Flah.)生理活性的影响作用。结果表明：干藻体在湿润的过程中,呼吸、光合和固氮活性依次恢复;且随水分含量的增加,光合活性和固氮活性逐渐增强,呼吸作用缓慢减弱并在一定水平上保持相对稳定,自由水是束缚水8倍左右时发菜生理活性全面恢复。吸水饱和的藻体在干燥过程中,光合、呼吸、固氮作用依次停止;呼吸作用随水分的丧失逐渐下降;固氮活性、光合活性在水分丧失20％～40％时有一定程度的增强,出现活性高峰;此后,生理活性下降,水分完全丧失时,光合作用终止,呼吸和固氮作用极其微弱。试验证明,水分是发状念珠藻生理活性的重要限制因子,适宜的水分有助于发菜维持正常的生理代谢和生长。