A new species of fossil Mus (Rodentia, Muridae) from the Indian Himalaya: Evolutionary and phylogenetic implications

A new species of fossil Mus (Rodentia, Mammalia) is reported from the Late Pleistocene fluvio-lacustrine deposits of the Kumaun sector of Indian Himalaya. The fossiliferous horizon, medium-coarse grained sand lenses embedded in the massive carbonaceous mud, is exposed at locality Dulam and is Late Pleistocene (ca. 30 ka) in age. A new species, Mus dulamensis n. sp., is proposed. Characterized by strongly distorted and moderately elongated M¹ (about 170% of M² length) with prominent conules in front of the t₂, higher magnitude of stephanodonty (between the t₁ and t₄ and between the t₃ and t₆), moderately reduced M³ (about 56% of M² length) and stronger connection between the cusps, this species is distinct from all other species of the genus and is included in the “booduga group”. I suggest that M. dulamensis n. sp. is comparatively more derived than M. auctor, M. flynni, M. jacobsi and Mus sp. and it may have given rise to M. booduga or M. dunni. It is further suggested that presently living M. booduga and M. dunni are more specialized than Mus dulamensis n. sp.     

Biology and ecology of Thallomys nigricauda (Rodentia, Muridae) in the Thornveld savannah of South Africa

The black-tailed tree rat, Thallomys nigricauda, is one of the few arboreal rodents inhabiting the southern African savannahs. During three field campaigns in 2001 and 2002 we collected data on the biology and ecology of T. nigricauda in the Thornveld savannah of the Molopo Nature Reserve (NW Province, South Africa). T. nigricauda lives a solitarily lifestyle in the Molopo Nature Reserve. Diet analyses shows that they are folivorous, specializing on leaves of Acacia mellifera and Acacia luederitzii. Male and female animals have a similar body size (≈80 g). Mean age at weaning was 30 days and mean litter size at this age was 1.8. Monthly survival rates varied between 0.25 and 0.86. Density was estimated to be 0.5–1 individual ha⁻¹. Overall, our results show that the basic ecological characteristics of this arboreal rodent are fairly similar to other rodent species.     

红曲霉繁殖相关wetM基因的克隆与生物信息学分析

红曲霉(Monascus spp.)是一类次级代谢产物极为丰富的食药用丝状真菌,其繁殖能力是大规模工业化生产的前提.以实验室保藏紫色红曲霉(Monascus purpureus)Mp-21为研究对象,通过高通量转录组(RNA-Seq)测序获得菌株转录本数据后进行注释分析,首次克隆出红曲霉繁殖相关wetM基因并进行生物信...     

Subtypes of Cryptosporidium spp. in mice and other small mammals

DNA sequence analysis of the 60 kDa glycoprotein (gp60) gene has been used extensively in subtyping Cryptosporidium hominis in humans and Cryptosporidium parvum in humans and ruminants. In this study, nucleotide sequences of the gp60 gene were obtained from seven Cryptosporidium species and genotypes related to the two species. Altogether, seven subtype families were detected, including four new subtype families. These data should be useful in studies of the transmission and zoonotic potential of cryptosporidiosis in mice and small wild mammals.     

Return to preferred habitats (edges) as a function of distance in Akodon azarae (Rodentia, Muridae) in cropfield-edge systems of central Argentina

We studied the ability of Akodon azarae (Rodentia, Muridae) to return to their preferred habitat, when released at a perpendicular distance (25, 50 or 75 m) from the edge towards the cropfield, and a parallel distance (100 m) away from the site of first capture within the edge habitat. Return success was estimated as the proportion of animals recovered in edges. The recapture rate between the field and the border was significantly higher than the recapture rate estimated according to successive captures in the border. Successful returns did not decrease significantly with increasing release distance, but animals released at 50 m from edges were less successful in returning to borders than the other release-distance groups. Although the median time taken to the first recapture in edges did not differ among the release-distance groups, rodents released at 25 m and 50 m returned to edges faster than those released at 75 m. A. azarae showed both a successful return to the edge and a trend to return to the home range area. We conclude that A. azarae can return to edges from cropfields at distances that are larger than those they usually travel, allowing the use of fields when they present good conditions for reproduction and survival. Successful return is probably the result of direct movements rather than random wandering.     

Geographic phenetic variation of two eastern-Mediterranean non-commensal mouse species, Mus macedonicus and M. cypriacus (Rodentia: Muridae) based on traditional and geometric approaches to morphometrics

We tested the hypothesis that skull shape within the genus Mus may vary with geographic location by assessing the extent and spatial distribution of phenotypic skull variation within and among two wild mouse species, M. macedonicus and M. cypriacus, using traditional and geometric morphometrics including a rather novel application of sliding semilandmarks. Shape was shown to be significantly correlated both with longitude and latitude in M. macedonicus, yet the correlation between morphometric and geographic distances was not significant, and morphometric differences between Asian and European populations were not higher than those within the particular continents. The phylogenetic signal was found to be stronger in dental characters than in cranial ones, however, overall concordance between the pattern of morphometric variation and the presumed history of M. macedonicus was rather weak. In both species, the dorsal and ventral sides of the skull were shown to covary in many aspects though there were also some differences between them, making the functional interpretation of these differences difficult. Discrimination between M. cypriacus and M. macedonicus as well as discrimination between two M. macedonicus subspecies was highly reliable using both traditional and geometric morphometric tools to analyze skull measurements.     

New data on the distribution of Mus spicilegus Petenyi, 1882 (Rodentia, Muridae) and a distinct mtDNA lineage in the southern Balkans

Despite extensive zoogeographical and taxonomical studies in the subgenus Mus, several issues still remain unresolved. In this context, the distribution area of the mound-building mouse, Mus spicilegus, remains undetermined at the southernmost parts of the species’ range, possibly due to low population densities and seasonal character of mound building. The new records from Greece, presented here, significantly expand the knowledge on Mus spicilegus distribution but also reveal eastern Greek populations which are genetically differentiated from all the other Greek and European ones. These results support an additional colonization route to eastern Greece as part of the migration and expansion process of the mound building mouse in Europe.     

Renal physiology of two southern African Mastomys species (Rodentia: Muridae): a salt-loading experiment to assess concentrating ability

Aspects of renal physiology were examined to test the hypothesis that two cryptic species of the genus Mastomys (Mastomys natalensis and Mastomys coucha) are geographically separated by differences in aridity tolerance. Laboratory-bred females of each species were subjected to different levels of salinity in their water source (distilled water, 0.9% NaCl, and 1.5% NaCl; 10 conspecifics in each group) from weaning until sexual maturity. Individuals of the two species exhibited similar rates of water consumption and urine production. The salinity treatments caused sodium diuresis in both species, evident in increased urine volume, decreased osmolality and increased osmotic output. Urine concentration, kidney mass and kidney relative medullary area (RMA) did not differ between species. The results of our study do not support the hypothesis that differences in osmoregulatory ability separate these two cryptic species. Nor do they support the use of salt loading to elicit maximum urine concentrations in mammals.     

Molecular phylogeny of the Acre clade (Crassulaceae): Dealing with the lack of definitions for Echeveria and Sedum

The phylogenetic relationships within many clades of the Crassulaceae are still uncertain, therefore in this study attention was focused on the “Acre clade”, a group comprised of approximately 526 species in eight genera that include many Asian and Mediterranean species of Sedum and the majority of the American genera (Echeveria, Graptopetalum, Lenophyllum, Pachyphytum, Villadia, and Thompsonella). Parsimony and Bayesian analyses were conducted with 133 species based on nuclear (ETS, ITS) and chloroplast DNA regions (rpS16, matK). Our analyses retrieved four major clades within the Acre clade. Two of these were in a grade and corresponded to Asian species of Sedum, the rest corresponded to a European–Macaronesian group and to an American group. The American group included all taxa that were formerly placed in the Echeverioideae and the majority of the American Sedoideae. Our analyses support the monophyly of three genera – Lenophyllum, Thompsonella, and Pachyphytum; however, the relationships among Echeveria, Sedum and the various segregates of Sedum are largely unresolved. Our analyses represents the first broad phylogenetic framework for Acre clade, but further studies are necessary on the groups poorly represented here, such as the European and Asian species of Sedum and the Central and South American species of Echeveria.     

A new record and an evaluation of the phylogenetic relationships of Abrothrix olivaceus markhami (Rodentia: Sigmodontinae)

Recent phylogenetic studies of the subfamily of cricetid rodents (Sigmodntinae) have validated the taxonomic classification at the tribal level of the Andean Clade. It is possible that some endemic species from Patagonian South America are part of this new tribe, but previous studies have not evaluated this hypothesis due to the difficulty of obtaining samples. In this study, we evaluate the phylogenetic relationships of Akodon markhami (Pine, 1973), a species endemic to the Chilean Patagonia, using individuals recently captured at the type locality of this taxon. Our results indicate that this form of Akodon corresponds to a subspecies of Abrothrix olivaceus, and should be incorporated into the Andean Clade as a geographic race of this widely distributed species on the South American continent. Based on a molecular clock calibration, we dated the origin of this geographic race during the last glacial cycles of the Quaternary, as the result of a vicariant process.     

Geometric craniometric analysis of sexual dimorphism and ontogenetic variation: A case study based on two geographically disparate species, Aethomys ineptus from southern Africa and Arvicanthis niloticus from Sudan (Rodentia: Muridae)

Non-geographic morphometric variation, particularly at the level of sexual dimorphism and ontogenetic (age-related) variation, has been documented in rodents, and useful for establishing whether to analyse sexes separately or together, and for selecting adult specimens for subsequent data recording and analysis. However, such studies have largely been based on traditional morphometric analyses of linear measurements that mainly focus on overall size, rather than shape-related morphometric variation. Unit-free, landmark/outline-based geometric morphometric analyses are considered to offer a more appropriate tool for assessing shape-related morphometric variation. In this study, we used geometric cranial morphometric analysis to assess the nature and extent of sexual dimorphism and age variation within the Tete veld rat, Aethomys ineptus (Thomas and Wroughton, 1908) from southern Africa and the African Nile rat, Arvicanthis niloticus (Desmarest, 1822) from Sudan. The results obtained were in turn compared with previously published results based on independent geometric and traditional cranial morphometric data from the same sampled populations examined in the present study. While our geometric morphometric results detected statistically significant sexual dimorphism in cranial shape within Ar. niloticus only, previously published results based on traditional morphometric data failed to detect significant sexual dimorphism within this species. However, similar to previously published traditional morphometric data, our geometric morphometric results detected statistically significant age-related variation in cranial shape and size within both Ae. ineptus and Ar. niloticus, with individuals of age classes 5 and 6 being considered to represent adult specimens. Our results highlight the importance of carefully evaluating both size- and shape-related non-geographic morphometric variation prior to the analysis of geographic variation and the delineation of species. Erroneous conclusions of non-geographic variation may have implications in the interpretation of geographic and evolutionary processes that may be responsible for morphological differences at both the inter- and intra-specific levels.     

Patterns of prevalence among bacterial communities of alpine accentors (Prunella collaris) in the Tatra Mountains

Patterns of prevalence in communities of bacteria in free-living adult, juvenile, and feces of alpine accentors (Prunella collaris) were studied in the West Carpathian Mountains, Slovakia, in 2002–2003. A total of 27 species of bacteria belonging to 13 different genera were identified in cloacal and pharyngeal swabs taken from captured birds (n = 30) and/or in feces (n = 171). Forty-six percent of adult males, 75% of adult females, and 82% of juveniles sampled tested positive for one or more types of bacterium. A close association was found between the genera Hafnia, Bifidobacterium, and Pseudomonas. The prevalence of bacteria in accentors was found to vary among seasons and between years but was not, in general, site-specific. Enterococcus and Escherichia (and possibly Hafnia and Serratia) were most prevalent in summer, whereas Bacillus, Klebsiella, Pantoea, Pseudomonas, Staphylococcus, and Yersinia occurred more often during other seasons. Evidence is presented that anthropogenic food obtained as refuse probably has a significant effect on the gut flora of birds frequenting areas of high human use.