Evolving challenges and strategies for fungal control in the food supply chain

Fungi that spoil foods or infect crops can have major socioeconomic impacts, posing threats to food security. The strategies needed to manage these fungi are evolving, given the growing incidence of fungicide resistance, tightening regulations of chemicals use and market trends imposing new food-preservation challenges. For example, alternative methods for crop protection such as RNA-based fungicides, biocontrol, or stimulation of natural plant defences may lessen concerns like environmental toxicity of chemical fungicides. There is renewed focus on natural product preservatives and fungicides, which can bypass regulations for ‘clean label’ food products. These require investment to find effective, safe activities within complex mixtures such as plant extracts. Alternatively, physical measures may be one key for fungal control, such as polymer materials which passively resist attachment and colonization by fungi. Reducing or replacing traditional chlorine treatments (e.g. of post-harvest produce) is desirable to limit formation of disinfection by-products. In addition, the current growth in lower sugar food products can alter metabolic routing of carbon utilization in spoilage yeasts, with implications for efficacy of food preservatives acting via metabolism. The use of preservative or fungicide combinations, while involving more than one chemical, can reduce total chemicals usage where these act synergistically. Such approaches might also help target different subpopulations within heteroresistant fungal populations. These approaches are discussed in the context of current challenges for food preservation, focussing on pre-harvest fungal control, fresh produce and stored food preservation. Several strategies show growing potential for mitigating or reversing the risks posed by fungi in the food supply chain.     

The fungal threat to global food security

Fungi threaten the security of food supply to human populations on several fronts. They destroy up to 30 % of crop products through disease and spoilage processes, while mycotoxin-producing fungi and opportunistic pathogens endanger food safety. Control of these fungi is vital for improving food security, but current measures are inadequate and further challenges due to human-population growth and climate change are escalating. Investment and innovation in research on strategies to control fungal growth, harnessed through international, inter-disciplinary collaboration across socio-economic boundaries, provides one key to rising to this challenge.     

植物病原真菌的自噬

作为真核生物中普遍存在的现象,自噬不但实现了对细胞内物质的降解和回收利用,而且与植物病原真菌早期侵染阶段的附着胞发育、膨压升高、菌丝体形成、完成侵染等一系列过程密切相关,并且发挥了重要的作用。本文归纳了植物病原真菌自噬的相关基因和自噬过程;总结了自噬对病原真菌生长发育、致病力的调控和影响;概括了病原真菌自噬所涉及的信号通路;阐明了自噬影响植物病原真菌侵染过程的主要分子机制。为今后以自噬相关基因或蛋白作为靶点来筛选抑制病原真菌侵染的新型药物提供新的策略和思路。     

Feeding strategies of Japanese monkeys against deterioration of habitat quality

Field observations of the feeding behaviour of Japanese monkeys were carried out from autumn to winter on Kinkazan Island which is covered with cool temperate forest. As a result, the following two points became clear: (1) the available food items were fixed for a long time; and (2) the habitat quality deteriorated monotonously because the monkeys themselves or their competitors, such as wild mice, utilized the food resources. Against the decrease in food intake caused by this deterioration of the habitat quality, the monkeys controlled the decrease in food intake by employing the following strategies: (1) they recovered their feeding speed by exploiting new food patches (patch-increase strategy); (2) they extended the time spent on feeding (time-extension strategy); and (3) they changed their food (food-change strategy). The former two strategies operated earlier than the third one.     

Variation in growth of the detritivore-shredder Sericostoma personatum (Trichoptera)

1. We investigated the growth of the detritivore-shredder Sericostoma personatum by feeding groups of larvae on a fresh macrophyte, Potamogeton perfoliatus , conditioned sitka spruce needles, Picea sitchensis , conditioned alder leaves, Alnus glutinosa , conditioned ash leaves, Fraxinus excelsior , and a fresh filamentous green alga, Microspora sp. A sixth treatment group of larvae was fasted.
2. The nitrogen content of the food items ranged from 1.4% dry weight (DW) for Picea needles to 4.4% DW for Microspora filaments. Consumption of the various food items by Sericostoma differed significantly, being highest for Picea , and lowest for Potamogeton and Microspora .
3. The instantaneous growth rate ranged from −1.3% DW day⁻¹ in the fasting group to 0.75% DW day⁻¹ in the Alnus group. The growth rate of larvae fed on Alnus , Fraxinus and Microspora was similar, and significantly higher than that of the other three groups. An increase in the size of larval cases followed the same pattern as larval growth, although with less variation between food items.
4. Larvae fed on Microspora exhibited the greatest increase in fat content, while that of the larvae fed on Picea and those in the fasting group decreased. The gross growth efficiency (G/I%) of Sericostoma (larva + case) ranged from 2% when fed on Picea to 34% when fed on Microspora . Consumption was significantly correlated with the nutrient content of food items, whereas G/I% and growth rate were only weakly related to food quality.
5. The growth of Sericostoma varies with diet and the food items sustaining highest growth rate are not necessarily the 'typical' shredder food resources.     

Efficient or Inaccurate? Analytical and Numerical Modelling of Random Search Strategies

A large number of observational and theoretical studies have investigated animal movement strategies for finding randomly located food items. Many of these studies have claimed that a particular strategy is advantageous over other strategies or that the spatial distribution of the food items affects the search efficiency. Here, we study a deliberately idealised problem, in which a blind forager searches for re-visitable food items. We show analytically that the forager’s efficiency is completely independent of both its movement strategy and the spatial pattern of the food items and depends only on the density of food in the environment. However, in some cases, apparent optima in search strategies can arise as artefacts of inappropriate and inaccurate numerical simulations. We discuss modifications to the idealised foraging problem that can confer an advantage on certain strategies, including when the forager has some memory or knowledge of the environment; when the food items are non-revisitable; and when the problem is viewed in an evolutionary context.     

Cellulase enhances endophytism of encapsulated Metarhizium brunneum in potato plants

The recent discovery that entomopathogenic fungi can grow endophytically in plant tissues has spurred research into novel plant protection measures. However, current applications of fungi aiming at endophytism mostly lack targeted formulation strategies resulting in low efficacy. Here, we aimed at enhancing Metarhizium brunneum CB15 endophytism in potato plants by (i) improvement of fungal growth from beads and (ii) cellulase formation or addition to encapsulated mycelium. We found that beads supplemented with cellulose alone or in addition with inactivated baker's yeast exhibited cellulase activity and increased mycelial growth by 12.6 % and 13.6 %, respectively. Higher enzymatic activity achieved by cellulase co-encapsulation promoted a shift from mycelial growth to spore formation with maximum numbers of 2.5 × 10⁸ ± 6.1 × 10⁷ per bead. This correlated with improved endophytism in potato plants by 61.2 % compared to non-supplemented beads. Our study provides first evidence that customized formulations of fungal entomopathogens with enzymes can improve endophytism and this may increase efficacy in plant protection strategies against herbivorous pests.     

Feeding strategies of primates in temperate and alpine forests: comparison of Asian macaques and colobines

We analyzed regional variation in the diets of two primate clades, Asian macaques and colobines, whose distributions include temperate–alpine forests. We addressed feeding strategies that enabled them to adapt to harsh environments characterized by relatively low mean temperatures and strong seasonality in both temperature and food availability. Macaques in tropical–lowland forests feed mainly on fruit and animal matter whereas populations in temperate–alpine forests feed more on foliage and on such items as bark and fungi. In comparison, colobines in tropical–lowland forests feed more on fruit and foliage whereas populations in temperate–alpine forests feed less on flowers and more on lichens. Annual precipitation and mean temperature, both of which reflect primary production, had the most significant effects on the feeding behavior of the macaques, whereas only mean temperature had a significant effect on that of colobines. We found two behavioral strategies used by both clades to cope with severe environmental conditions in temperate–alpine forests—shifting to other food items and adjusting feeding plasticity for fruit and foliage. Macaques responded to latitudinal changes by use of both strategies whereas the colobines adapted by using the latter only. By contrast, changes in altitude resulted in the macaques’ using the latter strategy and colobines’ using both. The different current distributions of Asian macaques and colobines could be attributed to differences in their feeding strategies originating in their digestive systems.     

Mycotoxins in food systems in Sub Saharan Africa: A review

Mycotoxins, toxic secondary metabolites of fungi are now recognised as major cause of food intoxications in Sub Saharan Africa (SSA). Aflatoxins, the most important of the group have been implicated in acute aflatoxicoses, carcinogenicity, growth retardation, neonatal jaundice and immunological suppression in SSA. The hot and humid tropical climate provides ideal condition for growth of toxigenicAspergillus spp, making food contamination to be widespread in SSA, with maize and groundnuts being the most contaminated. The available data suggests that cassava products (the most important African food) are not prone to aflatoxin contamination. Recent data on ochratoxin A produced by species ofAspergillus on grains have indicated the necessity for it to be monitored in SSA. Fumonisins represent the most importantFusarium mycotoxins in SSA, and surveillance data indicate very high contamination rates of almost 100% in maize samples from West Africa. Limited information exists on the occurrence of trichothecenes, while the data currently available suggest that zearalenone contamination seems not to be a problem in SSA. The strategies under investigation to mitigate the mycotoxin problem in SSA include education of the people on the danger of consuming mouldy foods, pre and post harvest management strategies with emphasis on biological control, use of plant products to arrest fungal growth during storage, enterosorbent clay technology, and the search for traditional techniques that could reduce/detoxify mycotoxins during food processing.     

Growth Simulation and Discrimination of Botrytis cinerea,Rhizopus stolonifer and Colletotrichum acutatum Using Hyperspectral Reflectance Imaging

This research aimed to develop a rapid and nondestructive method to model the growth and discrimination of spoilage fungi, like Botrytis cinerea, Rhizopus stolonifer and Colletotrichum acutatum, based on hyperspectral imaging system (HIS). A hyperspectral imaging system was used to measure the spectral response of fungi inoculated on potato dextrose agar plates and stored at 28°C and 85% RH. The fungi were analyzed every 12 h over two days during growth, and optimal simulation models were built based on HIS parameters. The results showed that the coefficients of determination (R²) of simulation models for testing datasets were 0.7223 to 0.9914, and the sum square error (SSE) and root mean square error (RMSE) were in a range of 2.03–53.40×10⁻⁴ and 0.011–0.756, respectively. The correlation coefficients between the HIS parameters and colony forming units of fungi were high from 0.887 to 0.957. In addition, fungi species was discriminated by partial least squares discrimination analysis (PLSDA), with the classification accuracy of 97.5% for the test dataset at 36 h. The application of this method in real food has been addressed through the analysis of Botrytis cinerea, Rhizopus stolonifer and Colletotrichum acutatum inoculated in peaches, demonstrating that the HIS technique was effective for simulation of fungal infection in real food. This paper supplied a new technique and useful information for further study into modeling the growth of fungi and detecting fruit spoilage caused by fungi based on HIS.     

Shedding new light on the diet of Norwegian lemmings: DNA metabarcoding of stomach content

Lemmings are key herbivores in many arctic food webs, and their population dynamics have major impacts on the functioning of tundra systems. However, current knowledge of lemming diet is limited, hampering evaluation of lemming–vegetation interactions. This lack of knowledge is mainly due to methodological challenges, as previously used microhistological methods result in large proportions of poorly resolved plant taxa. We analyzed diets of Norwegian lemmings (Lemmus lemmus) in three different habitats using a new method, DNA metabarcoding of stomach contents. To achieve detailed information on ingested vascular plants, bryophytes, and fungi, we amplified short fragments of chloroplast DNA (for plants; P6 loop of the trnL intron) and nuclear ribosomal DNA (for fungi; ITS1-region). Our results revealed that lemming diets were dominated by grasses, mainly Avenella flexuosa, and mosses, mainly Dicranum spp., but that a variety of other food items were also eaten. Vascular plant composition of the diets differed between heath, meadow, and wetland habitats, whereas bryophyte composition did not. Also, a variety of fungal taxa were retrieved, but as most of the identified taxa belong to micromycetes, they were unlikely to be consumed as food. The role of fungi in the diet of lemmings remains to be investigated. We suggest that there may be substantial variation between habitats and regions in lemming diet.     

The potential hazards of Aspergillus sp. in foods and feeds,and the role of biological treatment: A review

The contamination of food and feed by Aspergillus has become a global issue with a significant worldwide economic impact. The growth of Aspergillus is unfavourable to the development of food and feed industries, where the problems happen mostly due to the presence of mycotoxins, which is a toxic metabolite secreted by most Aspergillus groups. Moreover, fungi can produce spores that cause diseases, such as allergies and asthma, especially to human beings. High temperature, high moisture, retarded crops, and poor food storage conditions encourage the growth of mold, as well as the development of mycotoxins. A variety of chemical, biological, and physical strategies have been developed to control the production of mycotoxins. A biological approach, using a mixed culture comprised of Saccharomyces cerevisiae and Lactobacillus rhamnosus resulted in the inhibition of the growth of fungi when inoculated into fermented food. The results reveal that the mixed culture has a higher potential (37.08%) to inhibit the growth of Aspergillus flavus (producer of Aflatoxin) compared to either single culture, L. rhamnosus NRRL B-442 and S. cerevisiae, which inhibit the growth by 63.07% and 64.24%, respectively.     

纳他霉素生物合成和调控机制的相关研究进展

纳他霉素是一种对真菌具有广谱抗菌活性的多烯大环内酯类抗生素,它不仅能有效地抑制真菌的生长和繁殖,而且能够抑制一些真菌毒素的形成,已被大多数国家批准为抗真菌食品防腐剂使用,也被广泛应用于农业和医疗领域.纳塔尔链霉菌Streptomyces natalensis和恰努塔加链霉菌Streptomyces chatanooge...     

Mycorrhiza formation and nutrient concentration in leeks (Allium porrum) in relation to previous crop and cover crop management on high P soils

An improved integration of mycorrhizas may increase the sustainability in plant production. Two strategies for increasing the soil inoculum potential of mycorrhizal fungi were investigated in field experiments with leeks: Pre-cropping with mycorrhizal main crops and pre-establishment of mycorrhizal cover crops. Experiments on soils with moderate to high P content (26–50 mg kg^–1 bicarbonate-extractable P) showed that the previous crop influenced mycorrhiza formation, uptake of P, Zn, and Cu, and early growth of leek seedlings. A cover crop of black medic, established the previous autumn, increased the colonization of leek roots by mycorrhizal fungi. During early growth stages, this increase was 45–95% relative to no cover crop. However, cover cropping did not significantly increase nutrient concentration or growth. These variables were not influenced by the time of cover crop incorporation or tillage treatments. Differences in colonization, nutrient uptake and plant growth diminished during the growing period and at the final harvest date, the effects on plant production disappeared. High soil P level or high soil inoculum level was most likely responsible for the limited response of increased mycorrhiza formation on plant growth and nutrient concentrations.     

Effects of burrow condition and seed handling time on hoarding strategies of Edward's long-tailed rat (Leopoldamys edwardsi)

Many hoarding rodents use burrows not only for dwelling and protection from natural enemies, but also for food storage. However, little is known how burrows used by scatter-hoarding animals influence their foraging behaviors. In addition, handling time for a given food item has a fundamental impact on hoarding strategies of these hoarding animals: food items with longer handling time are more likely to be hoarded due to increasing predation risk because the animals spend more time outside their burrows if they consumed such food. By providing with two types of artificial burrows (aboveground vs. underground) and two types of food items (i.e. seeds) with contrasting handling times, we investigated how burrow condition and handling time co-influence hoarding strategies of a key scatter-hoarding rodent, Edward's long-tailed rat (Leopoldamys edwardsi) in large enclosures in southwest China. We found that only a few animals larder-hoarded fewer seeds when only aboveground burrows were available, while over 80% of the animals preferred to use the underground burrows and hoard significantly more seeds in the burrows when both aboveground and underground burrows were provided simultaneously. We also found that seed handling time significantly affected hoarding strategies of the animals: they consumed and/or scatter-hoarded more Camellia oleifera seeds with shorter handling time outside the burrow, but consumed and larder-hoarded more Lithocarpus harlandii seeds with longer handling time in underground burrows. Our study indicates that both burrow types and seed handling time have important impacts on hoarding strategies of scatter-hoarding animals.     

Inoculation with arbuscular mycorrhizal fungi suppresses initiation of haustoria in the root hemiparasite Pedicularis tricolor

Background and Aims

Plant parasitism and arbuscular mycorrhizal (AM) associations have many parallels and share a number of regulatory pathways. Despite a rapid increase in investigations addressing the roles of AM fungi in regulating interactions between parasitic plants and their hosts, few studies have tested the effect of AM fungi on the initiation and differentiation of haustoria, the parasite-specific structures exclusively responsible for host attachment and nutrient transfer. In this study, we tested the influence of AM fungi on haustorium formation in a root hemiparasitic plant.

Methods

Using a facultative root hemiparasitic species (Pedicularis tricolor) with the potential to form AM associations, the effects of inoculation were tested with two AM fungal species, Glomus mosseae and Glomus intraradices, on haustorium initiation in P. tricolor grown alone or with Hordeum vulgare ‘Fleet’ (barley) as the host plant. This study consisted of two greenhouse pot experiments.

Key Results

Both AM fungal species dramatically suppressed intraspecific haustorium initiation in P. tricolor at a very low colonization level. The suppression over-rode inductive effects of the parasite''s host plant on haustoria production and caused significant growth depression of P. tricolor.

Conclusions

AM fungi had strong and direct suppressive effects on haustorium formation in the root hemiparasite. The significant role of AM fungi in haustorium initiation of parasitic plants was demonstrated for the first time. This study provides new clues for the regulation of haustorium formation and a route to development of new biocontrol strategies in management of parasitic weeds.     

Influence of fungi on growth and survival of Onychiurus armatus (Collembola) in a metal polluted soil

Summary The influence of food quantity and quality on growth and survival of Onychiurus armatus (Tullb.) in metal polluted environments has been investigated in laboratory experiments. The Collembola was reared on five species of fungi isolated from a metal polluted soil close to a brass mill in SE Sweden.Survival of O. armatus was improved when fungal biomass was continuously added in a polluted mor (1,300 ppm Zn and 200 ppm Cu), and when specimens were fed metal polluted fungi for 1, 3 and 7 days a week, only those that were starved had increased mortality. Allometric growth, on the other hand, was significantly reduced when Collembola was given surplus of metal polluted fungi, whereas growth losses caused by metals were offset by protein rich food. Hence, sufficient food quantities alone could overcome mortality losses but not growth retardation in a metal polluted environment.Feeding preference of O. armatus was not determined by the protein content of the fungi although this was beneficial for growth. Metals changed the relative palatability of fungal species, but one of the metal tolerant species, Paecilomyces farinosus, which was also protein rich, remained reasonably attractive for O. armatus also when it was metal polluted. The mechanisms by which growth and survival of O. armatus were promoted by a combination of protein and Zn/Cu rich fungi seemed to be crucial in understanding the fate of a population of this species in a metal polluted soil.     

Importance of feeding strategies on the long-term success of fish invasions

This study assessed the feeding strategies of nine fish species in their native (Cuiabá River) and in an invaded basin (upper Paraná River) to identify trophic variables that may explain the success of these species in the new basin, over 30 years. The following predictions were analyzed: (i) species that display omnivorous or piscivorous diets in the native basin are favored in the invasion process over the long term, and (ii) specialist feeders are favored in the invasion process provided that their food items are highly available in the invaded area. These predictions were supported by the data; the species that were successful invaders had high trophic plasticity (omnivores), consumed a wide variety of food items from specific trophic guilds (piscivores), or if a species had a specialized diet, the resources demanded are abundant (detritivores). Thus, in a long-term perspective, the food resources used by these species are rarely limiting in aquatic ecosystems, and these feeding characteristics should be one of the key factors determining the colonization success of fishes. Understanding the factors that determine the success of invasive species in new areas is critical for developing management policies aimed at minimizing the impacts of biological invasions.     

Diet and cannibalism in plainfin midshipman Porichthys notatus

The macroscopic and microscopic diversity of potential food items available in the nests of plainfin midshipman Porichthys notatus were quantified and compared with items that were found in the stomach and intestine (digestive tract) of the guarding males. In this species, males occur as one of two possible reproductive morphs: guarder males that care for young and sneaker males that parasitize the courtship and care of guarder males. Although it was predicted that guarder males would have fewer feeding opportunities due to their confinement to the nest, they in fact had more food items in their digestive tracts than did sneaker males and females. Date in the breeding season (a proxy of care duration) and body condition were not correlated with the amount of food consumed by guarder males. The main type of food consumed was P. notatus embryos; 69% of all guarder males sampled had cannibalized offspring. By comparing the diet of both sexes and tactics, this study sheds light on some of the strategies designed to cope with the costs of providing parental care.     

Towards management of invasive ectomycorrhizal fungi

Ectomycorrhizal fungi are increasingly recognized as invasive species. Invasive ectomycorrhizal fungi can be toxic to humans, may compete with native, edible or otherwise valuable fungi, facilitate the co-invasion of trees, and cause major changes in soil ecosystems, but also have positive effects, enabling plantation forestry and, in some cases, becoming a valuable food source. Land-managers are interested in controlling and removing invasive fungi, but there are few available strategies for management and none are based on robust scientific evidence. Nonetheless, despite the absence of relevant experiments, we suggest that knowledge of the fundamental ecology of fungi can help guide strategies. We review the literature and suggest potential strategies for prevention, for slowing the spread of invasive fungi, for eradication, and for long-term management. In many cases the most appropriate strategy will be species and context (including country) specific. In order to effectively address the problems posed by invasive ectomycorrhizal fungi, land managers and scientists need to work together to develop and robustly test control and management strategies.