A national fish passage barrier inventory to support fish passage policy implementation and estimate river connectivity in New Zealand

Fragmentation of river systems is a key driver of freshwater biodiversity loss. Instream structure inventories are an essential component of delivering a strategic approach to restoring river connectivity. We used a range of data sources to collate the best available information on fish passage barriers and instream structures across the whole of New Zealand. To support implementation of new national policy objectives to maintain and improve river connectivity, the structure inventory has been integrated with a new fish passage assessment mobile application that allows river managers and asset owners to ground-truth, update and add records to the database. The data are provided open access and are being used for environmental reporting and to support strategic prioritisation of barrier mitigation actions. We used these data to quantify river connectivity at regional and national scales and demonstrated that at least half of New Zealand's river network is upstream of fish migration barriers. Limitations to our calculation of upstream river connectivity included the unknown influence of unrecorded structures, particularly on private land, missing information within recorded data, the large number of instream structures that have been identified but not yet assessed for their risk to fish passage, and spatial errors in the automated pairing of structures to a digital river network. A critical challenge for river managers is understanding the consequences of these uncertainties in the data for prioritisation and decision-making regarding barrier removal or mitigation.     

Multiple factors determine the effect of anthropogenic barriers to connectivity on riverine fish

Habitat fragmentation is a key anthropogenic factor in biodiversity decline, particularly in aquatic ecosystems. We predicted that differences in fish assemblage composition due to the impact of fragmentation would most strongly affect migratory species, and these effects would be dependent on the interaction between the characteristics of each barrier and the antecedent flow conditions that determine temporal variation in connectivity. These hypotheses were applied to a coastal river network in eastern Australia that is fragmented by multiple weirs and dams, including some with passage facilities. How these facilities interact with flow to mediate hydrological connectivity and hence patterns of community structure is unknown. Five distinct assemblages were identified that were associated with different combinations of environmental factors and barrier characteristics (spatial arrangement, passability), and key differences were due to variation in migration traits. Two spatially distinct assemblages were associated with fragmentation by two impassable barriers. However, the migration traits that accompanied these community changes were inconsistent between these groups, and likely reflected effects of barriers near the estuary and in the middle of the stream network on diadromous and freshwater-migratory species, respectively. Two assemblage groups in the vicinity of passable weirs varied temporally as a function of hydrology and the seasonal upstream movement of juvenile diadromous species. The effect of habitat loss in conjunction with fragmentation was evident, with a further assemblage group occurring in reaches where riparian vegetation and instream habitat have been altered by poor management of agriculture. This study indicates that the impact of habitat fragmentation in rivers depends on the interaction of the migration characteristics of biota, temporal variation in hydrology which mediates connectivity, and the location of anthropogenic barriers. Conservation policies aimed at minimizing human impacts on aquatic biodiversity need to jointly account for the separate impacts of habitat fragmentation and habitat loss.     

鲢幼鱼通过水流速度障碍的模拟

鱼类能否通过水流速度障碍直接影响过鱼设施的过鱼效果。利用计算机技术,综合水力因素、鱼类行为、地理特征及环境因子,展开鱼类通过水流速度障碍的模拟,有助于过鱼设施的优化设计。以国外涵洞式鱼道模拟软件Fish Xing为切入点,结合主要模块和关键因子,对我国特有鱼类鲢幼鱼进行模拟,得到鲢通过不同水流速度障碍的成功率;对比鲢在物理模型中的游泳表现,从模型主要模块和影响鱼类游泳表现的关键因子角度,分析影响鱼类通过水流速度障碍模拟的因素。结果表明,Fish Xing软件不能精确模拟鲢通过水流速度障碍的表现。分析表明,该软件在地理要素、管道特征和水力信息等参数方面具备独特的优势,但对我国鱼类有一定局限性,主要体现在鱼类的生物学信息如鱼类游泳特征等方面存在不足;进行鱼过障碍的模拟需要深入研究目标鱼类的生理特征、游泳能力及其与水力环境因子的响应关系。     

An approach to incorporate individual personality in modeling fish dispersal across in‐stream barriers

Animal personalities are an important factor that affects the dispersal of animals. In the context of aquatic species, dispersal modeling needs to consider that most freshwater ecosystems are highly fragmented by barriers reducing longitudinal connectivity. Previous research has incorporated such barriers into dispersal models under the neutral assumption that all migrating animals attempt to ascend at all times. Modeling dispersal of animals that do not perform trophic or reproductive migrations will be more realistic if it includes assumptions of which individuals attempt to overcome a barrier. We aimed to introduce personality into predictive modeling of whether a nonmigratory invasive freshwater fish (the round goby, Neogobius melanostomus) will disperse across an in‐stream barrier. To that end, we experimentally assayed the personalities of 259 individuals from invasion fronts and established round goby populations. Based on the population differences in boldness, asociability, and activity, we defined a priori thresholds with bolder, more asocial, and more active individuals having a higher likelihood of ascent. We then combined the personality thresholds with swimming speed data from the literature and in situ measurements of flow velocities in the barrier. The resulting binary logistic regression model revealed probabilities of crossing a barrier which depended not only on water flow and fish swimming speed but also on animal personalities. We conclude that risk assessment through predictive dispersal modeling across fragmented landscapes can be advanced by including personality traits as parameters. The inclusion of behavior into modeling the spread of invasive species can help to improve the accuracy of risk assessments.     

Culvert Replacement and Stream Habitat Restoration: Implications from Brook Trout Management in an Appalachian Watershed, U.S.A.

Large-scale culvert replacement programs could benefit migratory fish populations by reconnecting reproductive and foraging habitats in fragmented watersheds. The objectives of this study were to: (1) identify stream and culvert characteristics contributing to fish passage barriers within an Appalachian watershed, U.S.A.; (2) quantify the total amount of Brook trout ( Salvelinus fontinalis ) reproductive habitat isolated above culverts; and (3) use an ecological currency to identify culvert replacement priorities and stream mitigation credit opportunities. We surveyed 120 state-owned culverts and used a fish passage assessment filter to determine the "passability" of each culvert. We then constructed a geographic information system stream network model to quantify the amount of trout reproductive habitat isolated by culverts. Ninety-seven percent of surveyed culverts were classified as obstacles or complete barriers to trout dispersal. Culvert impassability was higher in small streams with slopes exceeding 3–5%, suggesting a direct relationship between slope and impassability. Thirty-three percent of Brook trout reproductive habitat, representing over 200 km of stream, was isolated by culverts. This is a conservative estimate, because we did not survey privately or federally owned culverts. The top 20 prioritized culverts accounted for nearly half of the habitat loss. Our results indicate that standard culvert designs placed in streams with slopes exceeding 5% consistently produce trout dispersal barriers and should be avoided during new road construction. The process developed here provides an efficient method for identifying culvert replacement priorities and may be used to maximize watershed scale benefits of stream restoration.     

我国过鱼设施建设需求、成果及存在的问题

本文首先阐述了水利水电工程对河流连通性的影响以及修建过鱼设施的对策,然后从河流破碎化程度和鱼类洄游习性的角度分析了国内建设过鱼设施的需求,介绍了国内建设过鱼设施的成果,最后提出了6点过鱼设施相关问题和建议:(1)利用多指标量化评价的方法,科学地确定过鱼对象;(2)以复杂流场为背景条件,贴合实际地推进鱼类上溯行为研究;(3)对过鱼设施加大资金投入,扩大设施规模,加大过鱼设施过水流量(至少应为河流流量的1%);(4)为鱼类下行、低水头水工建筑物引起的跌水河段建设过鱼设施;(5)扩大过鱼效果评估的覆盖面,提高监测时长和频率,提出有广泛适用性的监测评估方法;(6)栖息地修复、增殖放流、生态调度、分层取水等多手段联动,确保鱼类通过过鱼设施后仍然能够生存。     

Estimating the impact of oyster restoration scenarios on transient fish production

Oyster reef restoration projects are increasing in number both to enhance oyster density and to retain valuable ecosystem services provided by oyster reefs. Although some oyster restoration projects have demonstrated success by increasing density and biomass of transient fish, it still remains a challenge to quantify the effects of oyster restoration on transient fish communities. We developed a bioenergetics model to assess the impact of selected oyster reef restoration scenarios on associated transient fish species. We used the model to analyze the impact of changes in (1) oyster population carrying capacity; (2) oyster population growth rate; and (3) diet preference of transient fish on oyster reef development and associated transient fish species. Our model results indicate that resident fish biomass is directly affected by oyster restoration and oyster biomass, and oyster restoration can have cascading impacts on transient fish biomass. Furthermore, the results highlight the importance of a favorable oyster population growth rate during early restoration years, as it can lead to rapid increases in mean oyster biomass and biomass of transient fish species. The model also revealed that a transient fish's diet solely dependent on oyster reef‐derived prey could limit the biomass of transient fish species, emphasizing the importance of habitat connectivity in estuarine areas to enhance transient fish species biomass. Simple bioenergetics models can be developed to understand the dynamics of a system and make qualitative predictions of management and restoration scenarios.     

A comparison of passage efficiency for native and exotic fish species over an artificial baffled ramp

This study used an experimental approach to compare the passage success of native and exotic fish species from the temperate Southern Hemisphere over an artificial baffled fish ramp designed for overcoming low-head (≤1.0 m) fish migration barriers. Passage efficiency was, on average, lower for the exotic species [koi carp (Cyprinus carpio), rudd (Scardinius erythrophthalmus) and rainbow trout (Oncorhynchus mykiss)] compared to the native species [inanga (Galaxias maculatus), redfin bully (Gobiomorphus huttoni) and common bully (Gobiomorphus cotidianus)]. Nonetheless, there was considerable variation between individual species, with rainbow trout outperforming common bully and juvenile inanga, but koi carp and rudd failing to pass any of the ramps. The differences in predicted probability of passage success between the native and exotic fish species in this study were sufficient in some cases to indicate the potential for the baffled fish ramps to operate as a selective migration barrier. Nonetheless, further testing is required to validate these results across a broader range of conditions before deployment.     

Persistence and diversity of directional landscape connectivity improves biomass pulsing in simulations of expanding and contracting wetlands

In flood-pulsed ecosystems, hydrology and landscape structure mediate transfers of energy up the food chain by expanding and contracting in area, enabling spatial expansion and growth of fish populations during rising water levels, and subsequent concentration during the drying phase. Connectivity of flooded areas is dynamic as waters rise and fall, and is largely determined by landscape geomorphology and anisotropy. We developed a methodology for simulating fish dispersal and concentration on spatially-explicit, dynamic floodplain wetlands with pulsed food web dynamics, to evaluate how changes in connectivity through time contribute to the concentration of fish biomass that is essential for higher trophic levels. The model also tracks a connectivity index (DCI) over different compass directions to see if fish biomass dynamics can be related in a simple way to topographic pattern. We demonstrate the model for a seasonally flood-pulsed, oligotrophic system, the Everglades, where flow regimes have been greatly altered. Three dispersing populations of functional fish groups were simulated with empirically-based dispersal rules on two landscapes, and two twelve-year time series of managed water levels for those areas were applied. The topographies of the simulations represented intact and degraded ridge-and-slough landscapes (RSL). Simulation results showed large pulses of biomass concentration forming during the onset of the drying phase, when water levels were falling and fish began to converge into the sloughs. As water levels fell below the ridges, DCI declined over different directions, closing down dispersal lanes, and fish density spiked. Persistence of intermediate levels of connectivity on the intact RSL enabled persistent concentration events throughout the drying phase. The intact landscape also buffered effects of wet season population growth. Water level reversals on both landscapes negatively affected fish densities by depleting fish populations without allowing enough time for them to regenerate. Testable, spatiotemporal predictions of the timing, location, duration, and magnitude of fish concentration pulses were produced by the model, and can be applied to restoration planning.     

Evolution of reproductive isolation in stickleback fish

To understand how new species form and what causes their collapse, we examined how reproductive isolation evolves during the speciation process, considering species pairs with little to extensive divergence, including a recently collapsed pair. We estimated many reproductive barriers in each of five sets of stickleback fish species pairs using our own data and decades of previous work. We found that the types of barriers important early in the speciation process differ from those important late. Two premating barriers—habitat and sexual isolation—evolve early in divergence and remain two of the strongest barriers throughout speciation. Premating isolation evolves before postmating isolation, and extrinsic isolation is far stronger than intrinsic. Completing speciation, however, may require postmating intrinsic incompatibilities. Reverse speciation in one species pair was characterized by significant loss of sexual isolation. We present estimates of barrier strengths before and after collapse of a species pair; such detail regarding the loss of isolation has never before been documented. Additionally, despite significant asymmetries in individual barriers, which can limit speciation, total isolation was essentially symmetric between species. Our study provides important insight into the order of barrier evolution and the relative importance of isolating barriers during speciation and tests fundamental predictions of ecological speciation.     

Spatio-temporal changes in habitat potential of endangered freshwater fish in Japan

In recent years, biodiversity conservation and ecosystem restoration have been key issues of watershed management in many countries. To maintain or restore the environmental quality of watersheds, we need to assess the impact of anthropogenic changes on stream ecosystems with accuracy. In addition, watershed conservation planners have to make strategic plans and determine priorities of each conservation activity.

A new monitoring methodology to evaluate the change of habitat condition for freshwater fish based on a predictive habitat model using logistic regression was developed and applied to the whole of Japan. The main contributions of our approach were 1) the construction of a Geographical Information System (GIS) database that integrates many types of data, including freshwater fish species, water quality, habitat fragmentation by damming, geology, and climate; 2) spatial analysis for quantitative assessment and predictive habitat modeling using logistic regression to combine fish survey data and environmental habitat factors to determine critical and major habitat variables for each target fish; and 3) digital mapping and changes detection of fish habitat potential for targeted endangered fish species to show habitat distribution and spatio-temporal changes of habitat potential over a 25-year period (from 1977 to 2002). We found that predicted suitable habitat and actual fish habitat showed high overlap, and that habitat conditions and distribution patterns of target freshwater fish had been affected by major habitat variables to target species respectively.     

Where to Restore Ecological Connectivity? Detecting Barriers and Quantifying Restoration Benefits

Landscape connectivity is crucial for many ecological processes, including dispersal, gene flow, demographic rescue, and movement in response to climate change. As a result, governmental and non-governmental organizations are focusing efforts to map and conserve areas that facilitate movement to maintain population connectivity and promote climate adaptation. In contrast, little focus has been placed on identifying barriers—landscape features which impede movement between ecologically important areas—where restoration could most improve connectivity. Yet knowing where barriers most strongly reduce connectivity can complement traditional analyses aimed at mapping best movement routes. We introduce a novel method to detect important barriers and provide example applications. Our method uses GIS neighborhood analyses in conjunction with effective distance analyses to detect barriers that, if removed, would significantly improve connectivity. Applicable in least-cost, circuit-theoretic, and simulation modeling frameworks, the method detects both complete (impermeable) barriers and those that impede but do not completely block movement. Barrier mapping complements corridor mapping by broadening the range of connectivity conservation alternatives available to practitioners. The method can help practitioners move beyond maintaining currently important areas to restoring and enhancing connectivity through active barrier removal. It can inform decisions on trade-offs between restoration and protection; for example, purchasing an intact corridor may be substantially more costly than restoring a barrier that blocks an alternative corridor. And it extends the concept of centrality to barriers, highlighting areas that most diminish connectivity across broad networks. Identifying which modeled barriers have the greatest impact can also help prioritize error checking of land cover data and collection of field data to improve connectivity maps. Barrier detection provides a different way to view the landscape, broadening thinking about connectivity and fragmentation while increasing conservation options.     

鱼类通过鱼道内水流速度障碍能力的评估方法

鱼类通过鱼道内水流速度障碍能力的量化对鱼道设计有重要理论和实际价值,其基础是鱼类游泳能力的测定.首先对鱼类游泳能力的研究方法进行了概述总结,指出了鱼类游泳能力经典测试方法存在测定流场与自然情况相差较大的不足;分析了关键要素如鱼类行为特征、生理耗能规律及水力特性对鱼类通过水流速度障碍能力的影响;提出了分析鱼类游泳行为和能力与特征流场的关系,探讨鱼类通过水流障碍行为规律和生理疲劳恢复特征,通过研究仿自然流态下的鱼类自由游泳行为、水力计算及生理耗能的关系,构建多因素鱼类游泳能力关系式,定量评价鱼类通过鱼道内水流速度障碍的发展方向.     

Appetitive conditioning technique reveals behavioural limits to passage performance in fishes

Numerous environmental features have the potential to act as barriers to fishes in the field. Passage of these barriers depends on two main properties: willingness (behavioural) and physiological capacity. The physiological swimming capacity of fishes has been well studied. However, because most barrier research has focused on the population level effects of man – made barriers, little attention has been given to the behavioural aspects of fish passage. We used appetitive conditioning to create a simple laboratory based protocol to estimate behavioural limits to fish passage. We tested our protocol using barrier height (or passage space) as a model. Our protocol successfully identified behavioural limits in two species, juvenile rainbow trout, Oncorhynchus mykiss, and fathead minnows, Pimephales promelas. Our most interesting observation was that even a partial, submerged barrier had the potential to block fish movements. Our results suggest a potential use for conditioning techniques in assessing factors that constitute behaviour barriers to fishes. This information may help us to better predict fish movements in the field and may help us to design barriers that are more efficient at passing fishes.     

Quantitative analysis of connectivity in populations of a semi‐aquatic mammal using kinship categories and network assortativity

Analysing the impact of anthropogenic and natural river barriers on the dispersal of aquatic and semi‐aquatic species may be critical for their conservation. Knowledge of kinship relationships between individuals and reconstructions of pedigrees obtained using genomic data can be extremely useful, not only for studying the social organization of animals, but also inferring contemporary dispersal and quantifying the effect of specific barriers on current connectivity. In this study, we used kinship data to analyse connectivity patterns in a small semi‐aquatic mammal, the Pyrenean desman (Galemys pyrenaicus), in an area comprising two river systems with close headwaters and dams of various heights and types. Using a large SNP dataset from 70 specimens, we obtained kinship categories and reconstructed pedigrees. To quantify the barrier effect of specific obstacles, we built kinship networks and devised a method based on the assortativity coefficient, which measures the proportion between observed and expected kinship relationships across a barrier. The estimation of this parameter enabled us to infer that the most important barrier in the area was the watershed divide between the rivers, followed by a dam on one of the rivers. Other barriers did not significantly reduce the expected number of kinship relationships across them. This strategy and the information obtained with it may be crucial in determining the most important connectivity problems in an area and help develop conservation plans aimed at improving genetic exchange between populations of threatened species.     

A multi-scale approach to prioritize wetland restoration for watershed-level water quality improvement

Wetland restoration is commonly presented as an important strategy for maintaining and enhancing the water quality and ecological capital of watershed-scale ecosystems. Prioritizing restoration sites on the landscape is often a haphazard process based on widely held, though often untested, assumptions about relationships between watershed characteristics and water quality. We present a framework to target and prioritize wetland restoration locations using both regional and watershed-level screening models. The regression-tree and random forest models presented in this paper identify watershed variables with the strongest relationships to a given water quality parameter, present a clear hierarchy of variable importance, and present approximate thresholds in watershed area where these variables express the greatest impact on water quality. The proportion of watersheds classified as prior-converted agricultural land was an important predictor of both ortho and total phosphorus. Fortunately because prior-converted agricultural lands were historically wetlands, they are often very suitable for wetland restoration. These sites often have poorly-drained soils requiring artificial drainage to be suitable for agriculture. These drainage systems become conduits for transporting phosphorus from agricultural field and to area streams and rivers. Maintaining natural land-cover within stream buffers is identified as another important predictor of water quality. This seems to be especially true with regard to NO₃–NO₂ concentrations. Our model results support specific management recommendations including: (a) exclusion of agricultural land-uses from riparian buffers, (b) maintaining or increasing watershed-level wetland-cover and (c) reducing wetland fragmentation.     

Spatial extent of analysis influences observed patterns of population genetic structure in a widespread darter species (Percidae)

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Investigating the causes of fish community change in the Dahan River (Taiwan) using an autecology matrix

Recent work in river restoration and water resources management has seen the need to change the focus of analysis from reach to watershed scales to better define causes of watershed impairment. However, comprehensive investigations at a watershed scale are hindered by difficulties in using reach data that was collected for analysis at small spatial and short temporal scales. This is especially true for ecological and biological data. The approach assembles assessment and monitoring data and uses an autecology matrix to identify the changes in environmental and ecological conditions that may be associated with community change over spatial and temporal scales appropriate for ecosystem analysis in watersheds. The analysis uses a weight-of-evidence approach based on the percent of the community associated with a matrix factor. We have used the autecology matrix to examine historical fish community data from the Dahan River, Taiwan. The results show that the method provides an improved understanding of historical influences on fish community structure and supports a process-based analysis of community change over watershed scales and historic time periods. Further the method helps identify habitat requirements for the fish communities at each sampling site, supporting management and ecological restoration objectives.     

Comparability of a regional and state survey: effects on fish IBI assessment for West Virginia,U.S.A.

Probability-based survey designs are now being investigated to allow condition to be assessed for a discrete population of watershed management units and to infer probability of impairment to other unsampled watersheds. Results can be used to focus further monitoring and restoration efforts. Fish community data and index of biotic integrity (IBI) development were compared between the 1993 and 1998 Environmental Monitoring and Assessment Program Mid-Atlantic Integrated Assessment (EMAP-MAIA) survey and a West Virginia Regional EMAP (WV REMAP) survey conducted in 2001–2002. Both designs were based on probability surveys, but the EMAP design treated streams as a continuous linear network comprising an infinite population of points, while the REMAP design used a discrete set of watershed outlets as defined by 12-digit Hydrologic Cataloging Units (HUC12) as the sample population. The comparability of the watershed-based WV REMAP survey design results with the linear network-based EMAP-MAIA survey results for West Virginia was affected by the different size range of watershed areas included in each target population. Once similar watershed area ranges were considered by narrowing the size range included in the West Virginia EMAP-MAIA data set, virtually identical cumulative distribution functions for fish IBI scores were obtained. The reduced variability in reference conditions obtained by applying a restricted range of watershed areas allowed us to detect and correct for ecoregional differences in fish IBI metrics and scores, after excluding the biogeographically distinct Potomac River drainage basin located in the Central Appalachian Ridge and Valley Ecoregion. Handling editor: K. Martens     

Assessment of a vertical slot fishway in south‐eastern Australia designed to pass numerous species and size classes of fish

In the Barwon River, Australia, a tidal barrage formed a major impediment to fish movement so in 2013 a vertical slot fishway was installed. The assessment of fishways on tidal barriers is rare in Australia so to ensure the fishway was achieving its ecological objective (i.e. successfully passing the target size range of fish of 20–400 mm total length), fish were trapped at the entrance and exit on 12 occasions and the species composition, abundance and length of fish at the two locations were compared. Additionally, a section of the river downstream of the fishway was sampled to ensure fishway trapping accurately reflected the species composition wanting to use the fishway to move upstream. Eighteen species and 69,246 individual fish were caught in the fishway traps. Catch rates between locations did not differ for Common Galaxias (Galaxias maculatus) or Australian Smelt (Retropinna semoni), although species‐specific catch rates were lower at the exit for Flat‐headed Gudgeon (Philypnodon grandiceps), Tupong (Pseudaphritis urvillii) and Yellow‐eye Mullet (Aldrichetta forsteri). Length distribution between locations only differed for Australian Smelt with small fish under‐represented at the exit location (<25 mm total length). Eight species of fish were collected downstream of the fishway that were not collected in it; however, all of these were estuarine dependent except the non‐native Common Carp (Cyprinus carpio). Our results indicate that vertical slot fishways are a suitable design for improving river connectivity at a low head, tidal barrages in south‐eastern Australia. The study reiterates the importance of reinstating connectivity for species with obligate marine/freshwater migratory life history traits, and the indirect benefits of increased productivity made available to upstream areas.