Microbial communities related to volatile organic compound emission in automobile air conditioning units

During operation of mobile air conditioning (MAC) systems in automobiles, malodours can occur. We studied the microbial communities found on contaminated heat exchanger fins of 45 evaporators from car MAC systems which were operated in seven different regions of the world and identified corresponding volatile organic compounds. Collected biofilms were examined by scanning electron microscopy and fluorescent in situ hybridization. The detected bacteria were loosely attached to the metal surface. Further analyses of the bacteria using PCR-based single-strand conformation polymorphism and sequencing of isolated 16S rRNA gene fragments identified highly divergent microbial communities with multiple members of the Alphaproteobacteriales, Methylobacteria were the prevalent bacteria. In addition, Sphingomonadales, Burkholderiales, Bacillales, Alcanivorax spp. and Stenotrophomonas spp. were found among many others depending on the location the evaporators were operated. Interestingly, typical pathogenic bacteria related to air conditioning systems including Legionella spp. were not found. In order to determine the nature of the chemical compounds produced by the bacteria, the volatile organic compounds were examined by closed loop stripping analysis and identified by combined gas chromatography/mass spectrometry. Sulphur compounds, i.e. di-, tri- and multiple sulphides, acetylthiazole, aromatic compounds and diverse substituted pyrazines were detected. Mathematical clustering of the determined microbial community structures against their origin identified a European/American/Arabic cluster versus two mainly tropical Asian clusters. Interestingly, clustering of the determined volatiles against the origin of the corresponding MAC revealed a highly similar pattern. A close relationship of microbial community structure and resulting malodours to the climate and air quality at the location of MAC operation was concluded.     

Microbial community dynamics during start-up operation of flowerpot-using fed-batch reactors for composting of household biowaste

Microbial community changes during start-up operation of flowerpot-using fed-batch reactors for composting of household biowaste were studied by quinone profiling, rRNA-targeted fluorescence in situ hybridization (FISH) and cultivation methods. Total and plate counts of bacteria and quinone contents in the reactors increased sharply with time during the start-up period. These increase patterns had two phases; the first increase occurred during 3-4 weeks from the start of waste loading and the second increase was found during the subsequent 4 weeks. The microbial biomass was temporally reduced between the two succession phases. Ubiquinones predominated at the beginning of operation but decreased sharply with time, whereas partially saturated menaquinones became predominant at the fully acclimated stage. These data indicated that the major constituents of microbial populations changed from ubiquinone-containing Proteobacteria to Actinobacteria during the period of operation. Neighbour-joining dendrograms constructed based on the quinone profile data suggested that at least one month is required to establish a stable community structure with the Actinobacteria predominating. The characteristic population shift in the start-up process was also demonstrated by FISH probing and 16S rDNA sequence comparisons of bacterial strains isolated.     

Microbial volatile organic compound emissions from Stachybotrys chartarumgrowing on gypsum wallboard and ceiling tile

In neutralophilic bacteria, monovalent metal cation/H+ antiporters play a key role in pH homeostasis. In Escherichia coli, only four antiporters (NhaA, NhaB, MdfA and ChaA) are identified to function in maintenance of a stable cytoplasmic pH under conditions of alkaline stress. We hypothesised that the multidrug resistance protein MdtM, a recently characterised homologue of MdfA and a member of the major facilitator superfamily, also functions in alkaline pH homeostasis. Assays that compared the growth of an E. coli ΔmdtM deletion mutant transformed with a plasmid encoding wild-type MdtM or the dysfunctional MdtM D22A mutant at different external alkaline pH values (ranging from pH 8.5 to 10) revealed a potential contribution by MdtM to alkaline pH tolerance, but only when millimolar concentrations of sodium or potassium was present in the growth medium. Fluorescence-based activity assays using inverted vesicles generated from transformants of antiporter-deficient (ΔnhaA, ΔnhaB, ΔchaA) E. coli TO114 cells defined MdtM as a low-affinity antiporter that catalysed electrogenic exchange of Na+, K+, Rb+ or Li+ for H+. The K+/H+ antiport reaction had a pH optimum at 9.0, whereas the Na+/H+ exchange activity was optimum at pH 9.25. Measurement of internal cellular pH confirmed MdtM as contributing to maintenance of a stable cytoplasmic pH, acid relative to the external pH, under conditions of alkaline stress. Taken together, the results support a role for MdtM in alkaline pH tolerance. MdtM can therefore be added to the currently limited list of antiporters known to function in pH homeostasis in the model organism E. coli.     

Rapid leaf development drives the seasonal pattern of volatile organic compound (VOC) fluxes in a ‘coppiced’ bioenergy poplar plantation

Leaves of fast‐growing, woody bioenergy crops often emit volatile organic compounds (VOC). Some reactive VOC (especially isoprene) play a key role in climate forcing and may negatively affect local air quality. We monitored the seasonal exchange of VOC using the eddy covariance technique in a ‘coppiced’ poplar plantation. The complex interactions of VOC fluxes with climatic and physiological variables were also explored by using an artificial neural network (Self Organizing Map). Isoprene and methanol were the most abundant VOC emitted by the plantation. Rapid development of the canopy (and thus of the leaf area index, LAI) was associated with high methanol emissions and high rates of gross primary production (GPP) since the beginning of the growing season, while the onset of isoprene emission was delayed. The highest emissions of isoprene, and of isoprene photo‐oxidation products (Methyl Vinyl Ketone and Methacrolein, i_ox), occurred on the hottest and sunniest days, when GPP and evapotranspiration were highest, and formaldehyde was significantly deposited. Canopy senescence enhanced the exchange of oxygenated VOC. The accuracy of methanol and isoprene emission simulations with the Model of Emissions of Gases and Aerosols from Nature increased by applying a function to modify their basal emission factors, accounting for seasonality of GPP or LAI.     

Spatial distribution of respiratory activity in Pseudomonas putida 54G biofilms degrading volatile organic compounds (VOC)

All over the world, Microbial systems are used to clean soils, waters and air streams that have been contaminated with volatile organic compounds (VOC). Information about the structure and function of the microbes that metabolize these contaminants can be gained by studying these microbial systems. Here we describe the spatial patterns of respiratory activity in Pseudomonas putida 54G aerobic biofilms degrading two VOC, toluene and ethanol. Oxygen concentration profiles within the biofilm were measured using microsensors. These profiles are thought to be most accurate reflection of the structure and function of aerobic microbial biofilms. The degrading process certainly imposed a structural and functional patterns on the microbial biofilm community growing at the expense of the VOC substrate. Cryosectioning coupled with the staining of biofilm samples confirmed a high respiratory activity near the substratum, that decreased towards the biofilm/fluid interface. The accumulation of inactive cells in the outer biofilm layer protects the inner biofilm from high concentrations of toxic compounds and also limits the degradation rate. This stratification phenomenon appeared to be a general pattern for P. putida 54G biofilms degrading VOC. Received: 25 June 1998 / Accepted: 7 November 1998     

Seasonal microbial community dynamics in a flowerpot-using personal composting system for disposal of household biowaste

Microbial community dynamics in a flowerpot-using solid biowaste composting (FUSBIC) process were monitored seasonally by quinone profiling and conventional microbiological methods. The FUSBIC system, which consisted of three flowerpots (14 L or 20 L capacity) with 5-6 kg each of a soil-compost mixture (SCM) as the primary reactors, was loaded daily with household biowaste from November 1998 to October 1999. The monthly average waste reduction rate was 88.2% for the 14-L system and 92.5% for the 20-L system on a wet weight basis. The direct total microbial count detected in the 14-L primary reactors ranged from 4.5 to 9.6x10(11) cells.g(-1) of dry wt of SCM, and the viable count of aerobic heterotrophic bacteria recovered on agar plates at 28 degrees C varied from 1.9 to 5.7x10(11) CFU.g(-1) of dry wt. The quinone content of SCM samples from the 14-L and 20-L systems ranged from 160 to 353 nmol.g(-1) of dry SCM. Ubiquinones, unsaturated menaquinones, and partially saturated menaquinones constituted 15.0-36.4, 14.8-22.0, and 41.8-61.6 mol% of the total content, respectively. The major quinone types detected were usually MK-8(H(2)), MK-9(H(2)), and Q-10. Variations in quinone profiles were evaluated numerically by using two parameters, the dissimilarity index (D) and microbial divergence index (MD(q)). The upper limit of seasonal changes in the microbial community structure was about 30% as expressed by D values. The MD(q) values calculated ranged from 18 to 22. A significant positive correlation was found between seasonal temperature and bacterial populations containing partially saturated menaquinones. These results indicated that the FUSBIC system contained highly diverse microbial populations that fluctuated to some extent depending on seasonal temperature. Members of the Actinobacteria were suggested to be the major constituents of the total population present.     

Detection of aromatic catabolic gene expression in heterogeneous organic matter used for reduction of volatile organic compounds (VOC) by biofiltration

A qualitative procedure of purified DNA/RNA co-extraction from complex organic matter, used as biofilter support for removing volatile organic compounds, was set up and applied to detect xylene monooxygenase gene expression by RT-PCR. A DNA/RNA extraction protocol based on a combination of sample lyophilization pre-treatment and CTAB––phenol/chloroform extraction procedure was optimized for the recovery of purified nucleic acids [100–500 ng DNA (10 kb) and 0.5–2 μg of rRNA 16S from 100 mg matrix]. PCR and RT-PCR protocols were established to detect xylene monooxygenase gene expression starting from differentially induced organic matrices obtained by biofiltration technology. This work allowed the microbial degradation activities in heterogeneous organic solid media to be studied and suggests a rapid method to follow specific biological activities during solid and/or semisolid organic substrates biotransformation.     

大气二氧化碳浓度增加对木本植物BVOCs释放的影响

植物挥发性有机化合物(biogenic volatile organic compounds,BVOCs)在近地表臭氧和二次有机气溶胶生成中有重要作用,而大气CO2浓度上升对植物BVOCs释放有显著影响。利用Meta-analysis方法对已发表的数据进行整合分析发现:(1)总体而言,大气CO2浓度增加会导致不同木本植物(常绿与落叶) BVOCs释放降低;(2)就不同木本植物BVOCs释放而言,大气CO2浓度增加主要导致落叶植物BVOCs释放速率降低,而常绿植物则以增加为主;(3)就植物释放BVOCs种类而言,大气CO2浓度增加显著降低异戊二烯的释放速率,对单萜烯释放速率则无显著影响。结果可为阐明陆地生态系统BVOCs释放对全球CO2浓度增加的响应提供依据。     

Extraction and biodegradation of a toxic volatile organic compound (1,2-dichloroethane) from waste-water in a membrane bioreactor

An extractive membrane bioreactor has been used to treat a synthetic waste-water containing a toxic volatile organic compound, 1,2-dichloroethane (DCE). Biofilms growing on the surface of the membrane tubes biodegrade DCE while avoiding direct contact between the DCE and the aerating gas. This reduces air stripping by more than an order of magnitude (from 30–35% of the DCE entering the system to less than 1%) relative to conventional aerated bioreactors. Over 99% removal of DCE from a waste-water containing 1600 mg l^–1 of DCE was achieved at waste-water residence times of 0.75 h. Biodegradation was verified as the removal mechanism through measurements of CO₂ and chloride ion evolution in the bioreactor. No DCE was detected in the biomedium over the operating period. The diffusion-reaction phenomena occurring in the biofilm have been described by a mathematical model, which provides calculated solutions that support the experimental results by predicting that all DCE is biodegraded within the biofilm. Experimentally, however, the rate of DCE degradation in the biofilm was found to be independent of O₂ concentration, while the model predictions point to O₂ being limiting.     

Microbial community composition and its role in volatile compound formation during the spontaneous fermentation of ice wine made from Vidal grapes

Vidal grape grown in Ili, Xinjiang Autonomous Region, is one of few grapes used to ferment ice wine in China. Microbial community structure and volatile composition during the spontaneous fermentation of ice wine made from Vidal grapes in Ili were investigated using amplicon sequencing technology and headspace solid-phase microextraction/gas chromatography-mass spectrometer technologies. Among bacterial genera, Sphingobium, Pseudomonas and Sphingomonas gradually decreased, while Lactobacillus and Streptococcus increased during the spontaneous fermentation process. As regards fungi, the relative abundance of Vishniacozymaand Cladosporium reduced, but Hanseniaspora sharply raised. Additionally, correlations between microbes and volatile compounds were constructed based on multivariate data analysis. The results revealed that the functional core microbiota (mainly composed of eight bacterial genera and nine fungal genera) during ice wine fermentation showed considerable correlations with the formation of twenty-four volatile compounds in ice wine made from Vidal grapes. For example, Saccharomyces was positively correlated with ethanol, ethyl acetate and isoamylol; Hanseniaspora and Candidawere negatively correlated with hexanol; and Lactobacillus and Streptococcus were positively correlated with 2,3-butanediol, ethanol, ethyl acetate, isoamylol and isoamyl acetate. This studyprovides a reference for understanding the process of ice wine fermentation and improving the quality of ice wine made from Vidal grapes.     

The 4-phosphopantetheinyl transferase of Trichoderma virens plays a role in plant protection against Botrytis cinerea through volatile organic compound emission

Aims

This work was conducted to examine the effects of volatile organic compounds (VOCs) from Trichoderma virens and the 4-phosphopantetheinyl transferase 1 (TvPPT1) mutant in growth promotion and induction of defense responses of Arabidopsis thaliana seedlings using a co-cultivation system in vitro.

Methods

The contribution of VOCs to plant development and immunity was assessed by comparing the effectiveness of WT and Δppt1 mutant strains of T. virens in the formation of lateral roots and protection conferred against Botrytis cinerea. VOCs released by T. virens and Δppt1 mutant were compared by gas chromatography–mass spectrometry.

Results

Plants exposed to volatiles from WT T. virens showed 2-fold increase in fresh weight when compared to axenically-grown seedlings, which correlated with increased root branching and enhanced expression of the jasmonic acid-responsive marker pLox2:uidA as well as accumulation of jasmonic acid and hydrogen peroxide. T. virens produced a series of hydrocarbon terpenes, including the sesquiterpenes β-caryophyllene, (?)-β-elemene, germacrene D, τ-cadinene, δ-cadinene, α-amorphene, and τ-selinene and the monoterpenes β-myrcene, trans-β-ocimene, and cis-β-ocimene that were absent in TvPPT1 mutant.

Conclusions

Our results indicate that T. virens VOCs elicit both development and defense programs and that PPT1 plays an important role in biosynthesis of terpenes and plant protection against B. cinerea.     

Detection of Pseudomonas aeruginosa in sputum headspace through volatile organic compound analysis

Introduction

Chronic pulmonary infection is the hallmark of Cystic Fibrosis lung disease. Searching for faster and easier screening may lead to faster diagnosis and treatment of Pseudomonas aeruginosa (P. aeruginosa). Our aim was to analyze and build a model to predict the presence of P. aeruginosa in sputa.

Methods

Sputa from 28 bronchiectatic patients were used for bacterial culturing and analysis of volatile compounds by gas chromatography–mass spectrometry. Data analysis and model building were done by Partial Least Squares Regression Discriminant analysis (PLS-DA). Two analysis were performed: one comparing P. aeruginosa positive with negative cultures at study visit (PA model) and one comparing chronic colonization according to the Leeds criteria with P. aeruginosa negative patients (PACC model).

Results

The PA model prediction of P. aeruginosa presence was rather poor, with a high number of false positives and false negatives. On the other hand, the PACC model was stable and explained chronic P. aeruginosa presence for 95% with 4 PLS-DA factors, with a sensitivity of 100%, a positive predictive value of 86% and a negative predictive value of 100%.

Conclusion

Our study shows the potential for building a prediction model for the presence of chronic P. aeruginosa based on volatiles from sputum.     

The shift in plant species composition in a subarctic mountain birch forest floor due to climate change would modify the biogenic volatile organic compound emission profile

Background and aims

Mountain birch forests dominate in the Subarctic but little is known of their non-methane biogenic volatile organic compound (BVOC) emissions. The dwarf shrubs Empetrum hermaphroditum, Vaccinium myrtillus and Vaccinium uliginosum co-dominate in the forest floors of these forests. The abundance of these three dwarf shrubs relative to each other could be affected by climate warming expected to increase nutrient availability by accelerating litter decomposition and nutrient mineralization. We 1) compared the BVOC emission profiles of vegetation covers dominated by E. hermaphroditum and V. myrtillus plus V. uliginosum in a subarctic mountain birch forest floor, 2) distinguished the BVOCs emitted from plants and soil and 3) measured how the BVOC emissions from the different vegetation covers differed under darkness.

Methods

BVOCs were sampled during two growing seasons using a conventional ecosystem chamber-based method, collected on adsorbent and analyzed with gas chromatography–mass spectrometry.

Results

High abundance of E. hermaphroditum increased the sesquiterpene emissions. Soil released fewer different BVOCs than controls (i.e. natural vegetation) but the total emission rates were similar. Darkness did not affect the emissions. Carbon emitted as BVOCs was less than 0.2% of the CO₂ exchange.

Conclusions

Our results suggest that sesquiterpene emissions from subarctic mountain birch forest floors would be reduced following an increased abundance of V. myrtillus and V. uliginosum with climate change because these species respond rapidly to increased nutrient availability.     

Biogenic volatile organic compound emissions in four vegetation types in high arctic Greenland

Biogenic volatile organic compounds (BVOCs) emitted from terrestrial vegetation participate in oxidative reactions in the atmosphere, leading to the formation of secondary organic aerosols and longer lifetime of methane. Global models of BVOC emissions have assumed minimal emissions from the high latitudes. However, measurements from this region are lacking, and studies from the high arctic are yet to be published. This study aimed to obtain estimates for BVOC emissions from the high arctic, and hereby to add new knowledge to the understanding of global BVOC emissions. Measurements were conducted in four vegetation types dominated by Cassiope tetragona, Salix arctica, Vaccinium uliginosum and a mixture of Kobresia myosuroides, Dryas spp. and Poa arctica. Emissions were measured by an enclosure technique and collection of volatiles into adsorbent cartridges in August. Volatiles were analyzed by gas chromatography–mass spectrometry following thermal desorption. Isoprene showed highest emissions in S. arctica heath. Monoterpene and sesquiterpene emissions were especially associated with C. tetragona heath. Total observed emissions were comparable in magnitude to emissions previously found in the subarctic, whereas isoprene emissions were lower. This study shows that considerable amounts of BVOCs are emitted from the high arctic. The results are also of importance as the emissions from this region are expected to increase in the future as a result of the predicted climate warming in the high arctic. We suggest further studies to assess the effects of climate changes in the region in order to gain new knowledge and understanding of future global BVOC emissions.     

迷迭香对干旱胁迫的生理响应及其诱导挥发性有机化合物的释放

为探讨干旱胁迫对迷迭香(Rosmarinus officinalis)生理生化特性及挥发性有机化合物(VOC)释放规律的影响, 该文采用盆栽称重控水法研究了轻度(LD)、中度(MD)和重度(SD)干旱胁迫对迷迭香二年生实生苗叶片细胞膜透性、可溶性糖、可溶性蛋白质和丙二醛(MDA)含量以及脂氧合酶和抗氧化保护酶活性的影响, 并采用热脱附/气相色谱/质谱联用技术对不同干旱胁迫下迷迭香释放的挥发性有机化合物成分进行了分析。结果表明: 干旱胁迫对迷迭香叶片可溶性糖和可溶性蛋白质含量有明显的影响, MD和SD处理12天时其含量极显著地增加(p < 0.01), 与对照相比可溶性糖分别增加了51.5%和87.4%, 可溶性蛋白质含量分别增加了0.82和1.40倍。在MD和SD胁迫下, 超氧化物歧化酶、过氧化物酶和过氧化氢酶对干旱胁迫的响应存在一定差异, 表现为相互协调的作用。随着干旱胁迫时间的延长, 迷迭香体内MDA含量极显著地增加(p < 0.01), 细胞膜损伤率显著增加。分析显示, 迷迭香释放的VOC主要是萜烯类化合物, 占总量的46.0%以上; 随着干旱胁迫增强, 迷迭香释放的VOCs总量减少, 种类增多; LD、MD和SD胁迫处理萜烯类化合物相对含量与对照相比分别增加了14.4%、17.0%和23.7%; 干旱胁迫还明显诱导绿叶挥发物(green leaf volatiles)和醛类化合物的释放, 诱导产生了2-己烯醛、叶醇、山梨醛和癸醛4种新组分。研究表明: 干旱胁迫条件下, 迷迭香能够通过调节保护酶活性、渗透调节物质含量和释放VOCs来提高抗旱性。     

植物挥发性气体(VOCs)研究进展

植物挥发性气体(VOCs)在植物一植食性昆虫-天敌三级营养关系、植物间信息传递及适应性改变上都发挥着重要作用.植物释放VOCs具特异性、系统性、时序性与节律性等特点,VOCs主要在寄主选择行为、产卵行为、求偶行为、引来昆虫夭敌干涉等方面影响植食性昆虫.VOCs-介导的植物间信息传递作用包括4个过程:"释放者"植物合成及释放气体、气体在空气中的运输、气体在植物表面的吸附及"接收者"植株对气体信号的感知.收集VOCs的方法主要有吸附-溶剂洗脱法和吸附-热脱附法.     

植物释放挥发性有机物(VOCs)的研究进展

植物释放的有机物(VOCs)对大气圈臭氧的动态、一氧化碳的产生和甲烷的氧化起重要作用。本文主要综述了异戊二烯、单萜这两种重要的植物释放物,总结了国内外的研究进展,概括了它们的合成、释放以及环境因子的影响。同时简要介绍了其它几种植物释放的有机物,并就有机物的释放对大气化学、温室效应和全球变化的影响也作了简要分析。