Arrhenius and Gleason revisited: new hybrid models resolve an old controversy

Aim Studies have typically employed species–area relationships (SARs) from sample areas to fit either the power relationship or the logarithmic (exponential) relationship. However, the plots from empirical data often fall between these models. This article proposes two complementary and hybrid models as solutions to the controversy regarding which model best fits sample‐area SARs. Methods The two models are and , where S_A is number of species in an area, A, where z, b, c₁ and c₂ are predetermined parameters found by calculation, and where d and n are parameters to be fitted. The number of parameters is reduced from six to two by fixing the model at either end of the scale window of the data set, a step that is justified by the condition that the error or the bias, or both, in the first and the last data points is negligible. The new hybrid models as well as the power model and the logarithmic model are fitted to 10 data sets. Results The two proposed models fit well not only to Arrhenius’ and Gleason’s data sets, but also to the other six data sets. They also provide a good fit to data sets that follow a sigmoid (or triphasic) shape in log–log space and to data sets that do not fall between the power model and the logarithmic model. The log‐transformation of the dependent variable, S, does not affect the curve fit appreciably, although it enhances the performance of the new models somewhat. Main conclusions Sample‐area SARs have previously been shown to be convex upward, convex downward (concave), sigmoid and inverted sigmoid in log–log space. The new hybrid models describe successfully data sets with all these curve shapes, and should therefore produce good fits also to what are termed triphasic SARs.     

Energetics of chemolithoautotrophy in the hydrothermal system of Vulcano Island, southern Italy

The hydrothermal system at Vulcano, Aeolian Islands (Italy), is home to a wide variety of thermophilic, chemolithoautotrophic archaea and bacteria. As observed in laboratory growth studies, these organisms may use an array of terminal electron acceptors (TEAs), including O₂, , Fe(III), , elemental sulphur and CO₂; electron donors include H₂, , Fe²⁺, H₂S and CH₄. Concentrations of inorganic aqueous species and gases were measured in 10 hydrothermal fluids from seeps, wells and vents on Vulcano. These data were combined with standard Gibbs free energies () to calculate overall Gibbs free energies (ΔG_r) of 90 redox reactions that involve 16 inorganic N‐, S‐, C‐, Fe‐, H‐ and O‐bearing compounds. It is shown that oxidation reactions with O₂ as the TEA release significantly more energy (normalized per electron transferred) than most anaerobic oxidation reactions, but the energy yield is comparable or even higher for several reactions in which , or Fe(III) serves as the TEA. For example, the oxidation of CH₄ to CO₂ coupled to the reduction of Fe(III) in magnetite to Fe²⁺ releases between 94 and 123 kJ/mol e^?, depending on the site. By comparison, the aerobic oxidation of H₂ or reduced inorganic N‐, S‐, C‐ and Fe‐bearing compounds generally yields between 70 and 100 kJ/mol e^?. It is further shown that the energy yield from the reduction of elemental sulphur to H₂S is relatively low (8–19 kJ/mol e^?) despite being a very common metabolism among thermophiles. In addition, for many of the 90 reactions evaluated at each of the 10 sites, values of ΔG_r tend to cluster with differences < 20 kJ/mol e^?. However, large differences in ΔG_r (up to ～ 60 kJ/mol e^?) are observed in Fe redox reactions, due largely to considerable variations in Fe²⁺, H⁺ and H₂ concentrations. In fact, at the sites investigated, most variations in ΔG_r arise from differences in composition and not in temperature.     

Quantifying photosynthetic capacity and its relationship to leaf nitrogen content for global-scale terrestrial biosphere models

Photosynthetic capacity and its relationship to leaf nitrogen content are two of the most sensitive parameters of terrestrial biosphere models (TBM) whose representation in global‐scale simulations has been severely hampered by a lack of systematic analyses using a sufficiently broad database. Here, we use data of qualitative traits, climate and soil to subdivide the terrestrial vegetation into functional types (PFT), and then assimilate observations of carboxylation capacity, V_max (723 data points), and maximum photosynthesis rates, A_max (776 data points), into the C₃ photosynthesis model proposed by Farquhar et al. to constrain the relationship of (V_max normalised to 25 °C) to leaf nitrogen content per unit leaf area for each PFT. In a second step, the resulting functions are used to predict per PFT from easily measurable values of leaf nitrogen content in natural vegetation (1966 data points). Mean values of thus obtained are implemented into a TBM (BETHY within the coupled climate–vegetation model ECHAM5/JSBACH) and modelled gross primary production (GPP) is compared with independent observations on stand scale. Apart from providing parameter ranges per PFT constrained from much more comprehensive data, the results of this analysis enable several major improvements on previous parameterisations. (1) The range of mean between PFTs is dominated by differences of photosynthetic nitrogen use efficiency (NUE, defined as divided by leaf nitrogen content), while within each PFT, the scatter of values is dominated by the high variability of leaf nitrogen content. (2) We find a systematic depression of NUE on certain tropical soils that are known to be deficient in phosphorous. (3) of tropical trees derived by this study is substantially lower than earlier estimates currently used in TBMs, with an obvious effect on modelled GPP and surface temperature. (4) The root‐mean‐squared difference between modelled and observed GPP is substantially reduced.     

Geographical,anthropogenic and climatic determinants of bryophyte species composition and richness in the Shengsi archipelago,East China Sea

Introduction. Few attempts have been made to assess the comparative contributions of different environmental factors on species composition (SC) and richness (SR) of bryophytes on continental islands.

Methods. The bryophyte flora and the impact of seven environmental variables (island area, elevation, isolation, human disturbance, rainfall, vegetation cover, and exposed rock area) on 18 continental islands of the Shengsi archipelago in the East China Sea were investigated. Redundancy Analysis and Canonical Correspondence Analysis were used to determine to what extent the environmental variables could explain variation in species richness and species composition on these islands.

Key results & Conclusions. Island elevation, isolation, area and human disturbance intensity all significantly influenced bryophyte SC at island level, accounting for 12.7%, 9.9%, 8.8% and 7.8% of the total SC variation, respectively. Island area was the most important determinant of bryophyte SR (P?=?0.002), accounting for 58.3% of the total variation (9.7% by area per se and 48.6% confounded with other variables); elevation and human disturbance intensity also significantly influenced species richness, accounting for 10.5% and 6.9% of the total SR variation (conditional effects), respectively. Elevation and area had a positive interaction effect on SR while isolation exerted no significant effects (P?>?0.05). The relationships of bryophyte species number (S) with area (A) follow log₁₀ (S)?=?c?+?z?×?log₁₀ (A), with z values from 0.28 to 0.38. The effects of human disturbance on bryophyte SR followed the Gaussian model, supporting the ‘intermediate disturbance hypothesis’ to some extent.     

Regulation of nitrous oxide emission associated with benthic invertebrates

1. A number of freshwater invertebrate species emit N₂O, a greenhouse gas that is produced in their gut by denitrifying bacteria (direct N₂O emission). Additionally, benthic invertebrate species may contribute to N₂O emission from sediments by stimulating denitrification because of their bioirrigation behaviour (indirect N₂O emission). 2. Two benthic invertebrate species were studied to determine (i) the dependence of direct N₂O emission on the preferred diet of the animals, (ii) the regulation of direct N₂O emission by seasonally changing factors, such as body size, temperature and availability and (iii) the quantitative relationship between direct and indirect N₂O emission. 3. Larvae of the mayfly Ephemera danica, which prefer a bacteria‐rich detritus diet, emitted N₂O at rates of up to 90 pmol Ind.^?1 h^?1 under in situ conditions and 550 pmol Ind.^?1 h^?1 under laboratory conditions. In contrast, larvae of the alderfly Sialis lutaria, which prefer a bacteria‐poor carnivorous diet, emitted N₂O at invariably low rates of 0–20 pmol Ind.^?1 h^?1. The N₂O emission rate of E. danica larvae was positively correlated with seasonally changing factors (body size, temperature and availability). Direct N₂O emission by E. danica larvae was limited by low temperature in winter, larval development in spring and low availability in summer. 4. Both E. danica and the non‐emitting S. lutaria increased the total N₂O and N₂ emission from sediment in a density‐dependent manner. While N₂O directly emitted by benthic invertebrates can be partially consumed in the sediment (E. danica), non‐emitting species can still indirectly contribute to total N₂O emission from sediment (S. lutaria).     

The role of salinity and sodicity in the dieback of Acacia xanthophloea in Ngorongoro Caldera, Tanzania

Dieback of Acacia xanthophloea (Benth.) has opened up the once densely forested Lerai area in Ngorongoro Caldera, Tanzania. Soil samples were taken from profiles in the Ngorongoro Conservation Area and Lake Manyara National Park at sites of dieback and at sites with healthy A. xanthophloea trees. Dieback sites had significantly greater electrical conductivity (EC), water‐soluble Na⁺, K⁺, Cl^?, SO and sodium adsorption ratios (SAR) than healthy sites. The following mean values were recorded: EC (179 versus 70 mS m^?1; P < 0.001, Student's t‐test, n = 8 and 10, respectively; 40–60 cm); Na⁺ (99 versus 30 mmol_c kg^?1, P < 0.001, n = 7 and 8 respectively); K⁺ (11 versus 3 mmol_c kg^?1, P < 0.05); Cl^? (36 versus 7 mmol_c kg^?1, P < 0.01); SO (31 versus 5 mmol_c kg^?1, P < 0.01); and SAR (28 versus 8 mmol l^?1/2, P < 0.01). Water‐soluble Na⁺, Cl^? and SO concentrations in the Lerai profiles have probably resulted in toxicity and osmotic stress which contributed to dieback. Accumulation of salts may have occurred because of reduced flow of freshwater through Lerai and/or flow of water from Lake Magadi into Lerai. Forest recovery may be possible if salinity is reduced. Management strategies for reducing salinity have been implemented and included re‐establishing streams that flow through Lerai. Exclusion of elephants (Loxodonta africana) from Lerai is another management strategy presently under consideration.     

Effects of acid irrigation and liming on nitrate reduction and nitrate content of Picea abies (L.) Karst. and Oxalis acetosella L.

Nitrate reductase activities (NRA) and nitrate concentration per unit biomass in Picea abies (L.) Karst. roots from four different soil horizons and in leaves and roots of the frequent field-layer species Oxalis acetosella L. were measured on six different irrigation and liming treatments within the Höglwald project, S-Bavaria, Germany. Liming increased and acid irrigation reduced soil nitrate availability when compared to control plots. Nitrate assimilation capacities of the respective plant compartments per unit of soil volume or ground area were calculated from the NRA per unit of biomass and from the biomass distribution on the various treatments.Mean NRA per unit of biomass in Picea abies roots ranged between 0.23 and 0.09 mol NO ₂ ^- g_-1 d.w. h_-1 without significant effects of soil horizon or treatment. Limed and non-limed treatments showed for Picea different root distributions within the soil profile, but root biomass per unit of ground area (295 to 220 g d.w. m^-2) was not affected by the various treatments. Thus, nitrate assimilation capacity of Picea roots per unit of ground area ranged between 19.5 and 11.4 mol NO ₂ ^- m^-2 h_-1 without major treatment effects.In laminae of Oxalis acetosella mean NRA per unit of biomass ranged between 2.91 and 0.27 mol NO ₂ ^- g_-1 d.w. h_-1 and, in contrast to Picea abies, treatment effects were found with NRA on limed plots increased and on acid irrigated plots reduced when compared to control plots. Mean leaf biomass of Oxalis per unit of ground area ranged between 9.57 and 0.66 g d.w. m^-2 and responded in a similar manner to the various treatments. Thus, for the Oxalis leaf NRA per unit of ground area (27.85 to 0.18 mol NO₂ m^-2 h_-1) a cumulative response to the variations in nitrate availability was found.The different responses of Picea abies and Oxalis acetosella to changes in soil nitrate availability are discussed with respect to their suitability to prevent soil nitrate leaching.     

Modelling evolutionary processes in small populations: not as ideal as you think

Evolutionary processes are routinely modelled using ‘ideal’ Wright–Fisher populations of constant size N in which each individual has an equal expectation of reproductive success. In a hypothetical ideal population, variance in reproductive success (V_k) is binomial and effective population size (N_e) = N. However, in any actual implementation of the Wright–Fisher model (e.g., in a computer), V_k is a random variable and its realized value in any given replicate generation () only rarely equals the binomial variance. Realized effective size () thus also varies randomly in modelled ideal populations, and the consequences of this have not been adequately explored in the literature. Analytical and numerical results show that random variation in  and  can seriously distort analyses that evaluate precision or otherwise depend on the assumption that  is constant. We derive analytical expressions for Var(V_k) [4(2N – 1)(N – 1)/N³] and Var(N_e) [N(N – 1)/(2N – 1) ≈ N/2] in modelled ideal populations and show that, for a genetic metric G = f(N_e), Var(?) has two components: Var_Gene (due to variance across replicate samples of genes, given a specific ) and Var_Demo (due to variance in ). Var(?) is higher than it would be with constant N_e = N, as implicitly assumed by many standard models. We illustrate this with empirical examples based on F (standardized variance of allele frequency) and r² (a measure of linkage disequilibrium). Results demonstrate that in computer models that track multilocus genotypes, methods of replication and data analysis can strongly affect consequences of variation in . These effects are more important when sampling error is small (large numbers of individuals, loci and alleles) and with relatively small populations (frequently modelled by those interested in conservation).     

The effect of evapoconcentration on dissolved organic carbon concentration and quality in lakes of SW Greenland

1. Dissolved organic carbon (DOC) concentration was determined for a range of lakes of varying conductivity (30–4000 μS cm⁻¹) in the low Arctic of SW Greenland. DOC concentration range from <1 to >100 mg C L⁻¹, occasionally approaching 200 mg C L⁻¹ in meromictic, oligosaline lakes. DOC concentration was strongly related to [log₁₀] conductivity and total nitrogen. 2. Peak DOC concentrations (>80 mg L⁻¹) occur in lakes located approximately 50 km from the present ice sheet margin, a zone of low effective precipitation; evaporative concentration is the first‐order control on DOC concentration. Lakes at the coast and closer to the ice margin had lower DOC concentrations (<20 mg C L⁻¹). Local factors, notably the presence or absence of an outflow and catchment morphometry, resulted in considerable variability in concentration (20–100 mg C L⁻¹) within the area of maximum concentration around 51°W. 3. Despite their high DOC concentration, these lakes are essentially colourless. Dissolved organic matter (DOM) absorption (a₃₇₅) was low in most lakes (<10 m⁻¹) with maximum values (approximately 20 m⁻¹) occurring in one humic‐stained lake in the area. Absorption values corrected for DOC concentration () were very low (<0.6 m² g⁻¹ C) for all lakes apart from those at the coast, perhaps reflecting greater allochthonous inputs at these sites. 4. S, the spectral slope coefficient, ranged from 16 to 27 μm⁻¹ and was weakly correlated with DOC concentration. Both a₃₇₅ and S showed similar distribution patterns along the sampling gradient as did DOC, with maximum values at approximately 51°W. High and low S may indicate fresher, more rapidly flushed, systems with less degraded DOM or greater inputs from their catchments. 5. The lakes closer to the head of the fjord with higher conductivity, had low (<0.2 m² g⁻¹ C) and high S (>21 μm⁻¹) and this may reflect increasingly longer lake water residence times, greater DOM age and photochemical degradation.     

A model for the species–area–habitat relationship

Aim To propose a model (the choros model) for species diversity, which embodies number of species, area and habitat diversity and mathematically unifies area per se and habitat hypotheses. Location Species richness patterns from a broad scale of insular biotas, both from island and mainland ecosystems are analysed. Methods Twenty‐two different data sets from seventeen studies were examined in this work. The r² values and the Akaike's Information Criterion (AIC) were used in order to compare the quality of fit of the choros model with the Arrhenius species–area model. The classic method of log‐log transformation was applied. Results In twenty of the twenty‐two cases studied, the proposed model gave a better fit than the classic species–area model. The values of z parameter derived from choros model are generally lower than those derived from the classic species–area equation. Main conclusions The choros model can express the effects of area and habitat diversity on species richness, unifying area per se and the habitat hypothesis, which as many authors have noticed are not mutually exclusive but mutually supplementary. The use of habitat diversity depends on the specific determination of the ‘habitat’ term, which has to be defined based on the natural history of the taxon studied. Although the values of the z parameter are reduced, they maintain their biological significance as described by many authors in the last decades. The proposed model can also be considered as a stepping‐stone in our understanding of the small island effect.     

Comparative effects of growth irradiance on photosynthesis and leaf anatomy of Flaveria brownii (C4-like), Flaveria linearis (C3–C4) and their F1 hybrid

Photosynthetic rates and related anatomical characteristics of leaves developed at three levels of irradiance (1200, 300 and 80 umol · m^–2 · s^–1) were determined in the C₄-like species Flaveria brownii A.M. Powell, the C₃–C₄-intermediate species F. linearis Lag., and the F₁ hybrid between them (F. brownii × F. linearis). In the C₃–C₄ and F₁ plants, increases in photosynthetic capacity per unit leaf area were strongly correlated with changes in mesophyll area per unit leaf area. The C₄-like plant F. brownii, however, showed a much lower correlation between photosynthetic capacity and mesophyll area per unit leaf area. Plants of F. brownii developed at high irradiance showed photosynthetic rates per unit of mesophyll cell area 50% higher than those plants developed at medium irradiance. These results along with an increase in water-use efficiency are consistent with an increase of C₄ photosynthesis in high-irradiance-grown F. brownii plants, whereas in the other two genotypes such plasticity seems to be absent. Photosynthetic discrimination against ¹³C in the three genotypes was less at high than at low irradiance, with the greatest change occurring in F. brownii. Discrimination against ¹³C expressed as ¹³C was linearly correlated (r ² = 0.81; P<0.001) with the ratio of bundle-sheath volume to mesophyll cell area when all samples from the three genotypes were combined. This tissue ratio increased for F. brownii and the F₁ hybrid as growth irradiance increased, indicating a greater tendency towards Kranz anatomy. The results indicated that F. brownii had plasticity in its C₄-related anatomical and physiological characteristics as a function of growth irradiance, whereas plasticity was less evident in the F₁ hybrid and absent in F. linearis.Abbreviations A leaf surface area - A_ma, A_mn, A_lm total ma, mn or lm cell surface area - bs vascular bundle sheath - lm large spongy-mesophyll cells - ma mesophyll cells adjacent to bundle sheath - mn mesophyll cells not adjacent to bundle sheath - P_n net photosynthesis - (H, M, L) PPFD (high, medium, low) photosynthetic photon flux density - SLDW specific leaf dry wight - V_bs bs volume - V_{(ma + mn + bs)} total photosynthetic tissue volume - ¹³C ¹³C discrimination We thank Mrs. Lisa Smith for technical assistance in light microscopy and Dr. Ned Friedman (Department of Botany, University of Georgia, Athens, GA, USA) for the use of digitizing equipment. Participation of Dr. J.L. Araus in this work was supported by a grant Beca de Especialización para Doctores y Tecnólogos en el Extranjero, from Ministerio de Educatión y Ciencia, Spain.     

Archaeal diversity and geochemical energy yields in a geothermal well on Vulcano Island, Italy

The archaeal diversity in a shallow geothermal well on Vulcano Island, Italy was characterized using culture‐independent 16S rDNA sequence analysis. Environmental DNA was extracted from 56 °C well water, and the 16S ribosomal RNA gene was amplified with archaea‐specific primers. Restriction fragment length polymorphism (RFLP) analysis of ～250 clones revealed 35 unique patterns, which were sequenced and analyzed. These yielded 17 operational taxonomic units, of which 13, 3, and 1 were unique cren‐, eury‐, and korarchaeotal sequences, respectively. The majority of the crenarchaeotal phylotypes formed a novel, deeply‐branching clade that includes sequences from other hydrothermal environments, but no cultured representatives. Three phylotypes represent novel lineages in the Thermoproteales and two phylotypes represent a novel genus of Euryarchaeota. One euryarchaeotal phylotype was nearly identical (99%) to Palaeococcus helgesonii, an aerotolerant, hyperthermophilic fermenter previously isolated from the same well. To place this diverse archaeal community in the geochemical framework of this ecosystem, we calculate values of Gibbs free energy of 145 organic and inorganic redox reactions at in situ conditions. Energy yields ranged from 0 to 125 kJ per mole of electrons transferred. The most exergonic organic reactions were organic carbon oxidation with O₂ (>100 kJ/mol e^?), followed by oxidation with (61–93 kJ/mol e^?), Fe(III) (43–60 kJ/mol e^?), and S⁰/ (6–27 kJ/mol e^?) as terminal electron acceptors. Overall, energy yields from inorganic reactions were similar to those of the organic reactions considered, but were less systematic with respect to terminal electron acceptor. The oxidation of methane coupled with Fe(III) reduction yielded the most energy (123 kJ/mol e^?). However, the most exergonic inorganic reactions were predominantly O₂, , or reduction. Reduction of , S⁰, CO₂, and CO yielded significantly less energy (0–18 kJ/mol e^?). Metabolisms of the cultured organisms identified in the Pozzo Istmo archaeal clone library were exergonic. However, most of the archaeal diversity remains uncultured and energetic calculations reveal an extensive suite of potential lithotrophic and heterotrophic metabolisms that could be exploited by these novel organisms.     

Photosynthetic capacity and nitrogen partitioning among species in the canopy of a herbaceous plant community

Partitioning of nitrogen among species was determined in a stand of a tall herbaceous community. Total amount of nitrogen in the aboveground biomass was 261 mmol N m^–2, of which 92% was in three dominant species (Phragmites, Calamagrostis and Carex) and the rest was in the other eight subordinate species. Higher nitrogen concentrations per unit leaf area (n _L) with increasing photosynthetically active photon flux density (PPFD) were observed in all species except for three short species. The changes in n _L within species were mainly explained by the different nitrogen concentrations per unit leaf mass, while the differences in n _L between species were explained by the different SLM (leaf mass per unit leaf area). Photon absorption per unit leaf nitrogen ( _N ) was determined for each species. If photosynthetic activity was proportional to photon absorption, _N should indicate in situ PNUE (photosynthetic nitrogen use efficiency). High _N of Calamagrostis (dominant) resulted from high photon absorption per unit leaf area ( _area ), whereas high _N of Scutellaria (subordinate) resulted from low n _L although its _area was low. Species with cylinder-like leaves (Juncus and Equisetum) had low _N , which resulted from their high n _L. Light-saturated CO₂ exchange rates per unit leaf area (CER) and per unit leaf nitrogen (potential PNUE) were determined in seven species. Species with high CER and high n _L (Phragmites, Carex and Juncus) had low potential PNUE, while species with low CER and low n _L showed high potential PNUE. NUE (ratio of dry mass production to nitrogen uptake) was approximated as a reciprocal of plant nitrogen concentration. In most species, three measures of nitrogen use efficiency (NUE, _N and potential PNUE) showed strong conformity. Nitrogen use efficiency was high in Calamagrostis and Scutellaria, intermediate in Phragmites and relatively low in Carex. Nitrogen use efficiency of subordinate species was as high as or even higher than that of dominant species, which suggests that growth is co-limited by light and nitrogen in the subordinate species.     

Use of arboreal and terrestrial space by a small mammal community in a tropical rain forest in Borneo, Malaysia

Aim Small mammals were live‐trapped in a primary rain forest to evaluate the relative distribution of species to each other and to microhabitat properties on the ground and in the canopy. Location Kinabalu National Park in Borneo, Sabah, Malaysia. Methods Seven trapping sessions were conducted along two grids with 31 trap points at distances of 20 m on the ground and in the lower canopy at an average height of 13.5 m. Results Species diversity and abundance of small mammals proved to be high: 20 species of the families Muridae, Sciuridae, Tupaiidae, Hystricidae, Viverridae and Lorisidae were trapped, with murids being dominant in both habitat layers. The terrestrial community was significantly more diverse with 16 captured species (Shannon–Wiener's diversity index = 2.47), while 11 species were trapped in the canopy ( = 1.59). The Whitehead's rat, Maxomys whiteheadi, and the red spiny rat, Maxomys surifer, dominated the terrestrial community whereas the large pencil‐tailed tree mouse, Chiropodomys major, was by far the most abundant species in the canopy. Other abundant species of the canopy community, the dark‐tailed tree rat, Niviventer cremoriventer, and the lesser treeshrew, Tupaia minor, were also abundant on the ground, and there was no clear boundary between arboreal and terrestrial species occurrences. Main conclusions As most species were not confined to specific microhabitats or habitat layers, species seemed to rely on resources not necessarily restricted to certain microhabitats or habitat layers, and separation of species probably resulted mainly from a species’ concentrated activity in a preferred microhabitat rather than from principal adaptations to certain habitats. Ecological segregation was stronger in the more diverse terrestrial community, though microhabitat selection was generally not sufficient to explain the co‐occurrences of species and the variability between local species assemblages. Constraints on small mammal foraging efficiency in the three‐dimensional more complex canopy may be responsible for the similarity of microhabitat use of all common arboreal species. Community composition was characterized by mobile species with low persistence rates, resulting in a high degree of variability in local species assemblages with similar turnover rates in both habitats.     

The respiratory metabolism of selected lumbricidae

Summary Open-system infra red gas analysis was used to measure the CO₂ output throughout a year of four species of earthworm. The respiratory quotients (R.Q.s) of the four species were determined by means of a Warburg apparatus and it was found that they varied with season. In some instances R.Q.s did not fall within the expected range of 0.7 to 1.0 and the low values were attributed to calciferous gland activity and the fixation of metabolic CO₂.The results from CO₂ output measurements at 10°C and R.Q.s were used to calculate oxygen uptake, this varied seasonally but the mean annual values at 10°C for adult, large immature and small immature A. rosea were 64.17, 72.66 and 78.56 l O₂ g^-1 fresh wt h^-1 respectively. Mixed size groups of L. castaneus had a mean annual oxygen consumption at 10°C of 155.83 l O₂ g^-1 fresh wt h^-1 and equivalent values for D. rubida and O. cyaneum were 112.02 and 69.35 l O₂ g^-1 fresh wt h^-1. The apparent relationship between a high respiratory rate per unit weight and a litter dwelling habit (e.g. L. castaneus and D. rubida) disappeared when allowance was made for the weight of gut contents. Mean annual values for oxygen uptake in l O₂ g^-1 gut free fresh wt h^-1 at 10°C were L. castaneus (194.79), D. rubida (142.22), A. rosea (95.70) and O. cyaneum (139.28). No size specific metabolism could be demonstrated either within or between species, this is believed to be correlated with the different levels of activity shown by different species and their life stages.Rates of oxygen consumption per unit weight for A. rosea were shown to be proportional to ambient temperature. Q ₁₀ slopes of this relation, between 6 and 15°C, were higher for large immature A. rosea (2.42) and small immatures (1.96) than for adult clitellate worms (1.42). The mean Q ₁₀ relationship for all size classes of A. rosea was 1.93 over the same temperature range and the equivalent value for cocoons was 1.63. The relationship between the oxygen consumption rate of all size classes of A. rosea and ambient temperature was not significantly affected by acclimatisation at 5 and 10° C prior to measurements being made at 6, 10 and 15° C.     

Nitrogen cycling and dynamics in a macrophyte‐rich stream as determined by a release

1. A tracer release study was conducted in a macrophyte‐rich stream, the River Lilleaa in Denmark. The objectives of the study were to compare uptake rates per unit area of by primary producers and consumers in macrophyte and non‐macrophyte habitats, estimate whole‐stream uptake rates of and compare this to other stream types, and identify the pathways and estimate the rate at which enters the food web in macrophyte and non‐macrophyte habitats. 2. Macrophyte habitats had four times higher primary uptake rates and an equal uptake rate by primary consumers per unit habitat area as compared to non‐macrophyte habitats. These rates represent the lower limit of potential macrophyte effects because the rates will be highly dependent on macrophyte bed height and mean bed height in the River Lilleaa was low compared to typical bed heights in many lowland streams. Epiphytes accounted for 30% of primary uptake in macrophyte habitats, illustrating a strong indirect effect of macrophytes as habitat for epiphytes. N flux per unit habitat area from primary uptake compartments to primary consumers was four times lower in macrophyte habitats compared to non‐macrophyte habitats, reflecting much greater biomass accrual in macrophyte habitats. Thus, we did not find higher N flux from macrophyte habitats to primary consumers compared to non‐macrophyte habitats. 3. Whole‐stream uptake rate was 447 mgN m^?2 day^?1. On a habitat‐weighted basis, fine benthic organic matter (FBOM) accounted for 72% of the whole‐stream uptake rate, and macrophytes and epiphytes accounted for 19 and 8%, respectively. 4. We had expected a priori relatively high whole‐stream N uptake in our study stream compared to other stream types mainly due to generally high biomass and the macrophyte’s role as habitat for autotrophic and heterotrophic organisms, but our results did not confirm this. In comparison with other release study streams, we conclude that nutrient concentration is the overall controlling factor for N uptake rates across streams, mostly as a result of high biomass of primary uptake compartments in streams with high nutrient concentrations in general and not in macrophyte streams in particular. 5. Our results indicate that macrophytes play an important role in the longer‐term retention of N and thus a decrease in net downstream transport during the growing season compared to streams without macrophytes, through direct and indirect effects on the stream reach. Direct effects are high uptake efficiency, low turnover rate (partly due to no direct feeding on macrophytes) and high longevity. An indirect effect is increased sedimentation of FBOM in macrophytes compared to non‐macrophyte habitats and streams which possibly also increase denitrification. Increased retention with macrophyte presence would decrease downstream transport during the growing season and thus the N loading on downstream ecosystems.     

An in vivo analysis of photosynthesis during short-term O3 exposure in three contrasting species

The depressions of photosynthetic CO₂ uptake following O₃ exposures of 200 and 400 nmol mol^-1 for between 4 and 16 h were compared between Pisum sativum, Quercus robur and Triticum aestivum, and the potential causes of change identified in vivo. Photosynthetic change was examined by analysis of CO₂, O₂, O₃ and water vapour exchanges together with chlorophyll fluorescence in controlled environments. Under identical fumigation conditions, each species showed very similar rates of O₃ consumption. The light-saturated rate of CO₂ uptake showed a statistically significant decrease in each species with increasing O₃ dose. Although stomatal conductance declined in parallel with CO₂ uptake this did not account for the observed decrease in photosynthesis. The decrease in mesophyll conductance resulted primarily from a decrease in the apparent carboxylation capacity, implying in decreased activity of ribulose 1,5-bisphosphate carboxylase/oxygenase. The maximum capacity of carboxylation was consequently reduced by over 30% and 50% after 16 h fumigation with 200 and 400 nmol mol^-1 O₃ respectively. Additionally, in Q. robur, a statistically significant inhibition of the CO₂ saturated rate of photosynthesis occurred after 16 h with 400 nmol mol^-1 O₃, suggesting that the ability to regenerate ribulose 1,5-bisphosphate was also impaired. None of the species showed any significant decrease in the efficiency of light-limited photosynthesis following fumigation at 200 nmol mol^-1 O₃, but effects were apparent at 400 nmol mol^-1 O₃. The common feature in all three species was a decline in carboxylation capacity which preceded any other change in the photosynthetic apparatus.Abbreviations A_sat net CO₂ uptake rate per unit leaf area at light saturation - A net CO₂ uptake rate per unit leaf area - A_max net CO₂ uptake rate per unit leaf area at CO₂ and light saturation - c_i mole fraction of CO₂ in the intercellular air space - g_s stomatal conductance to CO₂ - F_m maximum chlorophyll fluorescence - F_v variable chlorophyll fluorescence - _c quantum yield of CO₂ uptake for absorbed light - ₀ quantum yield of oxygen evolution for incident light - PPFD photosynthetically active radiation - Rubisco ribulose 1,5-bisphosphate carboxylase/oxygenase - RuBP ribulose 1,5-bisphosphate - Vc_max maximum rate of carboxylation     

Estimating parameters in a land-surface model by applying nonlinear inversion to eddy covariance flux measurements from eight FLUXNET sites

Flux measurements from eight global FLUXNET sites were used to estimate parameters in a process‐based, land‐surface model (CSIRO Biosphere Model (CBM), using nonlinear parameter estimation techniques. The parameters examined were the maximum photosynthetic carboxylation rate () the potential photosynthetic electron transport rate (j_{max, 25}) of the leaf at the top of the canopy, and basal soil respiration (r_{s, 25}), all at a reference temperature of 25°C. Eddy covariance measurements used in the analysis were from four evergreen forests, three deciduous forests and an oak‐grass savanna. Optimal estimates of model parameters were obtained by minimizing the weighted differences between the observed and predicted flux densities of latent heat, sensible heat and net ecosystem CO₂ exchange for each year. Values of maximum carboxylation rates obtained from the flux measurements were in good agreement with independent estimates from leaf gas exchange measurements at all evergreen forest sites. A seasonally varying and j_{max, 25} in CBM yielded better predictions of net ecosystem CO₂ exchange than a constant and j_{max, 25} for all three deciduous forests and one savanna site. Differences in the seasonal variation of and j_{max, 25} among the three deciduous forests are related to leaf phenology. At the tree‐grass savanna site, seasonal variation of and j_{max, 25} was affected by interactions between soil water and temperature, resulting in and j_{max, 25} reaching maximal values before the onset of summer drought at canopy scale. Optimizing the photosynthetic parameters in the model allowed CBM to predict quite well the fluxes of water vapor and CO₂ but sensible heat fluxes were systematically underestimated by up to 75 W m⁻².     

A model for the effects of primary substrates on the kinetics of reductive dehalogenation

A kinetic model that describes substrate interactions during reductive dehalogenation reactions is developed. This model describes how the concentrations of primary electron-donor and -acceptor substrates affect the rates of reductive dehalogenation reactions. A basic model, which considers only exogenous electron-donor and -acceptor substrates, illustrates the fundamental interactions that affect reductive dehalogenation reaction kinetics. Because this basic model cannot accurately describe important phenomena, such as reductive dehalogenation that occurs in the absence of exogenous electron donors, it is expanded to include an endogenous electron donor and additional electron acceptor reactions. This general model more accurately reflects the behavior that has been observed for reductive dehalogenation reactions. Under most conditions, primary electron-donor substrates stimulate the reductive dehalogenation rate, while primary electron acceptors reduce the reaction rate. The effects of primary substrates are incorporated into the kinetic parameters for a Monod-like rate expression. The apparent maximum rate of reductive dehalogenation (q _{m, ap} ) and the apparent half-saturation concentration (K _ap ) increase as the electron donor concentration increases. The electron-acceptor concentration does not affect q _{m, ap} , but K _ap is directly proportional to its concentration.Definitions for model parameters RX halogenated aliphatic substrate - E-M ⁿ reduced dehalogenase - E-M ⁿ⁺² oxidized dehalogenase - [E-M ⁿ ] steady-state concentration of the reduced dehalogenase (moles of reduced dehalogenase per unit volume) - [E-M ⁿ⁺²] steady-state concentration of the oxidized dehalogenase (moles of reduced dehalogenase per unit volume) - DH₂ primary exogenous electron-donor substrate - A primary exogenous electron-acceptor substrate - A2 second primary exogenous electron-acceptor substrate - X biomass concentration (biomass per unit volume) - f fraction of biomass that is comprised of the dehalogenase (moles of dehalogenase per unit biomass) - stoichiometric coefficient for the reductive dehalogenation reaction (moles of dehalogenase oxidized per mole of halogenated substrate reduced) - stoichiometric coefficient for oxidation of the primary electron donor (moles of dehalogenase reduced per mole of donor oxidized) - stoichiometric coefficient for oxidation of the endogenous electron donor (moles of dehalogenase reduced per unit biomass oxidized) - stoichiometric coefficient for reduction of the primary electron acceptor (moles of dehalogenase oxidized per mole of acceptor reduced) - stoichiometric coefficient for reduction of the second electron acceptor (moles of dehalogenase oxidized per mole of acceptor reduced) - r _RX rate of the reductive dehalogenation reaction (moles of halogenated substrate reduced per unit volume per unit time) - r _d1 rate of oxidation of the primary exogenous electron donor (moles of donor oxidized per unit volume per unit time) - r _d2 rate of oxidation of the endogenous electron donor (biomass oxidized per unit volume per unit time) - r _a1 rate of reduction of the primary exogenous electron acceptor (moles of acceptor reduced per unit volume per unit time) - r _a2 rate of reduction of the second primary electron acceptor (moles of acceptor reduced per unit volume per unit time) - k _RX mixed second-order rate coefficient for the reductive dehalogenation reaction (volume per mole dehalogenase per unit time) - k _d1 mixed-second-order rate coefficient for oxidation of the primary electron donor (volume per mole dehalogenase per unit time) - k _d2 mixed-second-order rate coefficient for oxidation of the endogenous electron donor (volume per mole dehalogenase per unit time) - b first-order biomass decay coefficient (biomass oxidized per unit biomass per unit time) - k _a1 mixed-second-order rate coefficient for reduction of the primary electron acceptor (volume per mole dehalogenase per unit time) - k _a2 mixed-second-order rate coefficient for reduction of the second primary electron acceptor (volume per mole dehalogenase per unit time) - q _m,ap apparent maximum specific rate of reductive dehalogenation (moles of RX per unit biomass per unit time) - K _ap apparent half-saturation concentration for the halogenated aliphatic substrate (moles of RX per unit volume) - k _ap apparent pseudo-first-order rate coefficient for reductive dehalogenation (volume per unit biomass per unit time)     

Leaf anatomy and photosynthetic acclimation in <Emphasis Type="Italic">Valeriana jatamansi</Emphasis> L. grown under high and low irradiance

Relationship of leaf anatomy with photosynthetic acclimation of Valeriana jatamansi was studied under full irradiance [FI, 1 600 mol(PPFD) m^–2 s^–1] and net-shade [NS, 650 mol(PPFD) m^–2 s^–1]. FI plants had thicker leaves with higher respiration rate (R _D), nitrogen content per unit leaf area, chlorophyll a/b ratio, high leaf mass per leaf area unit (LMA), and surface area of mesophyll cell (S _mes) and chloroplasts (S _c) facing intercellular space than NS plants. The difference between leaf thickness of FI and NS leaves was about 28 % but difference in photon-saturated rate of photosynthesis per unit leaf area (P _Nmax) was 50 %. This indicates that P _Nmax can increase to a larger extent than the leaf thickness with increasing irradiance in V. jatamansi. Anatomical studies showed that the mesophyll cells of FI plants had no open spaces along the mesophyll cell walls (higher S _c), but in NS plants wide open spaces along the mesophyll cell wall (lower S _c) were found. Positive correlation between S _c and P _Nmax explained the higher P _Nmax in FI plants. Increase in mesophyll thickness increased the availability of space along the mesophyll cell wall for chloroplasts (increased S _c) and hence P _Nmax was higher in FI plants. Thus this Himalayan species can acclimate to full sunlight by altering leaf anatomy and therefore may be cultivated in open fields.