The key role of lignin decomposing fungi in the decay of roofs thatched with water reed

We investigated the involvement of microorganisms in the rapid reed decay of roofs thatched with water reed. Numerous bacteria and fungi were isolated by enrichment cultures from reed samples and from fungal fruit bodies on roofs. All strains were characterised in respect to their abilities to degrade cellulose, hemicelluloses and the lignin model substance Poly-R-478. Only 15 of the 92 isolated bacterial strains were capable of degrading cellulose and hemicelluloses. However, nearly all 61 of the identified fungal isolates had these abilities. Nevertheless, only 14 of the isolated fungal strains as well as a reference isolate of Trametes versicolor were capable of degrading Poly-R-478. The ability of the microorganisms to attack complete reed was assessed using a newly developed test system which measures the loss of dry weight during the incubation. A significant loss of dry weight was apparent only in tests using the ligninolytic fungi Pycnoporus cinnabarinus, Trametes versicolor, Phlebia tremellosa and some Mycena species, but not in the case of the majority of cellulolytic bacteria and fungi. From these results, we conclude that ligninolytic fungi are capable of destroying complete reed structure and that they play the key role in the process of the rapid decay of roofs thatched with reed. Directly after the initial lignin attack, cellulose and hemicellulose were degraded to a great extent, evidenced by the large loss of dry weight (up to 72 %), which significantly exceeds the lignin content of reed (ca. 15 %). However, after the initial attack by ligninolytic fungi, bacteria or other fungi capable of degrading cellulose and hemicelluloses may contribute to the progressive decay of reed under natural conditions. Furthermore, we show that the rate of decay depends on the source of the reed and on the reed quality.     

Influence of polymeric 3-alkylpyridinium salts from the marine sponge Reniera sarai on the growth of algae and wood decay fungi

Polymeric alkylpyridinium salts (poly-APS) isolated from the marine sponge Reniera sarai act as antifouling and anticholinesterase agents. They also show moderate haemolytic and cytotoxic activities against different cell lines. The haemolytic activity of poly-APS is due to their detergent-like structure and behaviour in aqueous solutions. In this work, the lytic activity of poly-APS against freshwater and marine algae, and inhibitory effects on wood decay fungi, were investigated. The results show that poly-APS inhibit the proliferation and movements of susceptible algae. Effects of poly-APS were time- and concentration-dependent and differed between various algal species. No growth inhibition effects were observed towards the examined wood fungi.     

Diversity and Characterization of Culturable Fungi from Marine Sediment Collected from St. Helena Bay, South Africa

Marine fungi are known to originate from a wide variety of habitats within the marine environment. Marine sediment represents one environmental niche, with most fungi occurring in these sediments being facultative marine fungi with terrestrial origins. It has not been proven whether these fungi merely survive the harsh environmental conditions presented by the ocean sediment, as opposed to playing an active role in this ecological niche. During this study, marine sediment was collected from St. Helena Bay, on the west coast of the Western Cape, South Africa. Using dilution, enrichment, and repetitive culturing techniques, 59 fungal isolates were obtained from marine sediments and identified to at least genus level using morphological and molecular methods. Moreover, a series of tests were performed to characterize the physical and physicochemical attributes of the isolates. Results showed that the isolates not only survived but also had the potential to grow in the natural conditions present in this environment. Extracellular cellulase was produced by the filamentous fungal isolates indicating their probable role in detrital decay processes and therefore the carbon cycle on the ocean bed. Also, denitrification patterns were observed when isolates were grown in liquid media amended with NaNO(2), NaNO(3), and (NH(4))SO(4), implicating that these fungi have the potential to play an active role in denitrification, co-denitrification, and ammonification phases of nitrogen cycles occurring in the marine sediments.     

Efficiency of uronic acid uptake in marine alginate-degrading fungi

Despite the fact that many marine fungi, including phycomycetes, yeasts, ascomycetes and hyphomycetes, have been recorded from living and/or dead phaeophytes, only a few of these have been shown to be capable of degrading alginic acid or alginates. The degradation is achieved by the action of an exoenzyme complex, comprising alginate lyase, as well as alginate hydrolase activities. The latter was detected only recently by the authors. In this study, the growth of two marine sodiumalginate-degrading deuteromycetes,Asteromyces cruciatus andDendryphiella salina, was investigated, and the assimilation efficiency of sodiumalginate and its uronic acid degradation products, respectively, was estimated from the economic coefficient (E). E is calculated from the mycelial dry weight, divided by the weight of substrate consumed for this production. The economic coefficient forA. cruciatus was 48.6%, and that ofD. salina 38.9%. This indicates that the former species uses the alginate degradation products more efficiently than the latter. The observed E-values for the marine deuteromycetes agree with those from other fungi, e.g. terrestrial species. In general, it is concluded that the marine fungi appear to play a more important role in kelp-based ecosystems than was realized previously.     

Leaf-eating invertebrates as competitors of aquatic hyphomycetes

Summary Leaf-eating invertebrates selectively ingest leaf areas rich in fungal cells. The effect of this process on coincident and cumulative species diversity (species numbers and evenness) of the fungi was studied on 3 substrates (oak leaves, larch and spruce needles) in 2 hardwater and 2 softwater streams. Cumulative species number of colonizing fungi follows the equation S=k·A ^z(A=area below decay curve of the substrate, k=substrate-specific constant, Z=0.47). Higher feeding activity means faster weight loss of the substrate which leads to lower species richness of the fungi. The opposite is true for early successional stages on larch needles. Evenness of the fungi (distribution of individuals among species) is negatively correlated with feeding intensity by invertebrates, as measured by increased decay rates. The overall effect of leaf-eating invertebrates on aquatic hyphomycetes resembles that of potent competitors preempting substrate otherwise used by a late successional tail of relatively rare fungi.     

Established and potential impacts of eukaryotic mycelial decomposers in marine/terrestrial ecotones

Marine mycelial decomposers (eumycotes, members of Kingdom Fungi, and oomycotes, zoosporic members of the Kingdom Protoctista) are highly adapted for capture of solid substrate by pervasion and digestion from within. Thus they exert their influence in areas of large input of litter of vascular plants, especially at some types of terrestrial/marine ecosystemic interfaces (ecotones). Unavailability of methods easily used by general microbial ecologists has hampered progress in the study of marine mycelial decomposers, and there are still pockets of difficulty in this regard (especially for oomycotes). Recently published or refined methods for measuring fungal mass and productivity have begun to allow us to realize the impacts of fungi in marine ecotones. For example, it is now clear that the older paradigm reflecting negligible contribution of microbial mass to litter nitrogen content is false for the standing-decay system of saltmarsh grasses — in these decay systems, fungal mass can account for virtually all of the nitrogen present at some point(s) in the standing-decay period. Another generally held belief about marine fungi has also been reversed — ascomycetes (Fungi) of a saltmarsh grass (smooth cordgrass) clearly do digest lignocellulose under natural-decay circumstances. Much more work is needed to clarify the situation, but at present it appears that major types of marine ecotones (e.g., saltmarshes and mangroves) differ sharply in the balance among major groups of decomposers (eumycotes, oomycotes, and bacteria) with regard to their utilization of vascular-plant litter. In saltmarshes, microbial production in standing grass litter is strongly dominated by fungi, and oomycotes do not show evidence of a substantial role in decomposition. In mangroves, submerged fallen leaves appear to support minor fungal occupancy, but ubiquitous and rapid occupancy by oomycotes (especially Halophytophthora vesicula). Many exciting areas of research are now more open than ever before to marine microbial ecologists interested in working with mycelial decomposers.     

Pre-harvest Fungal Colonization Affects Storage Life of Bing Cherry Fruit

Treatment of sweet cherry ( Prunus avium cv. Bing) trees with either two mildewcide cover sprays or multiple (18) applications of topical and systemic fungicides produced cherry fruit that were either highly colonized or relatively uncolonized by fungi, respectively. Fruit from the multiple application treatment had a storage life of up to 8 weeks (7 weeks at 1-4°C plus 1 week at simulated retail temperatures of 20–21°C), whereas the commerciallymanaged fruits (two mildewcides) were extensively colonized by fungi and extensively decayed when stored under the same conditions. Stringent post-harvest disinfection did not significantly reduce postharvest decay, and only slightly reduced isolation frequency of fungi. The data obtained in this study suggest that the degree of preharvest fungal colonization is a primary determinant of the percentage of post-harvest decay, and that pre-harvest colonization can potentially be addressed by pre and post-harvest management practices.     

Lignicolous freshwater fungi along a north–south latitudinal gradient in the Asian/Australian region; can we predict the impact of global warming on biodiversity and function?

Fungi play a key role in decomposition of submerged wood in streams, breaking down lignocelluloses and releasing nutrients, and are important in ecosystem functioning. These wood decay fungi are known as freshwater lignicolous fungi and are usually studied by collecting submerged woody litter, followed by incubation in a moist chamber. This review explains what are freshwater lignicolous fungi, their decay mechanisms, roles and physiological attributes. Asian/Australasian lignicolous freshwater fungi have been relatively well-surveyed and enable an account of their distribution along a latitudinal transect. Unlike freshwater leaf-dwelling fungi their diversity in water bodies is greater towards the Equator which suggests they are important for decaying submerged wood in the tropics. Riparian vegetation, disturbances such as pollution, streams drying and study methods, may all affect the diversity of freshwater lignicolous fungi, however, the overall trend is a higher diversity in the tropics and subtropics. Climate changes together with increasing deposition of woody debris from human activities, and alteration of environmental factors (such as water pollution, and dam building) will impact freshwater lignicolous fungi. Changing diversity, structure and activities of freshwater fungal communities can be expected, which will significantly impact on aquatic ecosystems, particularly on nutrient and carbon cycles. There is a great opportunity to monitor changes in freshwater fungi communities along latitudinal (north to south) and habitat gradients (from human disturbed to natural habitats), and study ecological thresholds and consequences of such changes, particularly its feedback on nutrient and carbon cycles in freshwater systems.     

Breakdown of fresh and dried <Emphasis Type="Italic">Rhizophora mucronata</Emphasis> leaves in a mangrove of Southwest India

Patterns of fungal colonization, mass loss and biochemical changes during the decomposition of predried and fresh (naturally fallen) leaves of Rhizophora mucronata were studied in a southwest mangrove of India. Dried and fresh leaves in litter bags were introduced at the mid-tide zone and retrieved after 1, 2, 4, 8, 10, 12 and 14 weeks. On incubation in the laboratory, a total of 5 ascomycetes and 18 anamorphic fungi were recorded. The majority of anamorphic taxa were natural inhabitants of the phyllosphere of senescent leaves. Following two weeks of exposure, they were largely replaced by marine fungi (ascomycetes and anamorphic fungi). More taxa were recovered from dried than from fresh leaves, and predrying accelerated the initial rate of mass loss. Ergosterol levels were much lower than those reported from vascular plant detritus exposed in other aquatic habitats. Both ergosterol and nitrogen levels peaked after between 4 weeks and 8 weeks of exposure; ergosterol levels subsequently declined, while nitrogen remained stable in predried leaves and fell in fresh leaves. The dynamics of remaining mass for the first 8 weeks of exposure were best described by a double-exponential decay model. The decay rate then appeared to accelerate, and the second phase was best described by a single exponential decay model. The apparent breakpoint coincided with an increase in the salinity of the mangrove swamp.     

Simulated nitrogen deposition affects wood decomposition by cord-forming fungi

Anthropogenic nitrogen (N) deposition affects many natural processes, including forest litter decomposition. Saprotrophic fungi are the only organisms capable of completely decomposing lignocellulosic (woody) litter in temperate ecosystems, and therefore the responses of fungi to N deposition are critical in understanding the effects of global change on the forest carbon cycle. Plant litter decomposition under elevated N has been intensively studied, with varying results. The complexity of forest floor biota and variability in litter quality have obscured N-elevation effects on decomposers. Field experiments often utilize standardized substrates and N-levels, but few studies have controlled the decay organisms. Decomposition of beech (Fagus sylvatica) blocks inoculated with two cord-forming basidiomycete fungi, Hypholoma fasciculare and Phanerochaete velutina, was compared experimentally under realistic levels of simulated N deposition at Wytham Wood, Oxfordshire, UK. Mass loss was greater with P. velutina than with H. fasciculare, and with N treatment than in the control. Decomposition was accompanied by growth of the fungal mycelium and increasing N concentration in the remaining wood. We attribute the N effect on wood decay to the response of cord-forming wood decay fungi to N availability. Previous studies demonstrated the capacity of these fungi to scavenge and import N to decaying wood via a translocating network of mycelium. This study shows that small increases in N availability can increase wood decomposition by these organisms. Dead wood is an important carbon store and habitat. The responses of wood decomposers to anthropogenic N deposition should be considered in models of forest carbon dynamics.     

SOME ASPECTS OF THE PHYSIOLOGY AND BIOCHEMISTRY OF MARINE FUNGI

1. This review deals with certain aspects of the physiology and biochemistry of marine fungi. Though it is not easy to define what is meant by a marine fungus, the information presented here relates to those species that by consensus can be accepted as being truly marine. The material is in two parts, that relating to the higher fungi (Ascomycotina, Basidiomycotina and Deuteromycotina) and that relating to the lower fungi, particularly those zoosporic fungi that require sodium for growth. 2. Higher marine fungi appear to have a similar carbon, nitrogen and vitamin nutrition to their terrestrial counterparts. 3. Growth of higher marine fungi can be optimal in 100% sea water, but more frequently optimal growth is at a lower percentage. The percentage giving optimal growth may be determined by the rate of ion uptake required to generate the necessary turgor for growth. The tolerance of the vegetative phase of many terrestrial fungi to salinity appears little different from that of marine fungi. In general, members of the Basidiomycotina are particularly sensitive to salinity, while those of the Ascomycotina and Deuteromycotina are much more tolerant. 4. The degree of tolerance to salinity may be dependent upon temperature and whether or not adaptation by the fungus has occurred. 5. Maintenance of a suitable internal potassium concentration by a higher marine fungus is important for growth in a saline medium. Calcium appears to be necessary for the retention of potassium and organic solutes within the hyphae. 6. It appears that higher marine fungi are able to maintain a ratio of potassium: sodium higher than that of sea water by the presence of a plasma membrane ATPase which may have a higher pH optimum than the equivalent enzyme from terrestrial counterparts. 7. Higher fungi produce more glycerol as the salinity of the external medium is increased. Whether or not the compound is involved in osmoregulation has yet to be determined. 8. Turgor is thought to be generated in higher marine fungi growing in sea water by organic solutes (predominantly glycerol and arabitol) and by ions, with the latter playing the major role. Though interpretation of the data depends on several assumptions, the high concentrations of sodium that seem likely to be present in hyphae or cells have implications for the activity of enzymes, if they have similar properties to those of higher plants. There is a need for information on the effects of high concentrations of ions on enzymes located in the cytoplasm of higher fungi. 9. In spite of some experimental uncertainties, it seems that reproduction and spore germination of higher marine fungi are very much less affected by salinity than are the same processes of terrestrial counterparts. 10. The zoosporic marine fungi require sodium for growth. Though the ion is required at high concentration for growth, sodium cannot be replaced by potassium. Evidence indicates that sodium is involved in the transport of solutes across the plasma membrane. 11. The carbon and nitrogen requirements for the growth of the zoosporic marine fungi demand further investigation, particularly at the biochemical level. There is evidence that the respiration of these fungi possesses many interesting features. 12. Vitamin requirements of the zoosporic marine fungi depend on the isolate under investigation. Vitamin B., does not now seem to be an obligatory requirement. The ability of phospholipids and sterols to stimulate growth requires further investigation. 13. Further studies on marine fungi in the laboratory should focus particularly on growth in continuous culture. Physiological and biochemical studies would be helped by more precise guidance from those concerned with the ecology of these fungi.     

Marine fungi in sediments of the Sea of Japan (Russian territory) and their biologically active metabolites

The most abundant marine fungi encountered in various regions of the Sea of Japan belong to the genera Penicillium, Aspergillus, Wardomyces, Trichoderma, Chrysosporium, and Chaetomium. Facultative marine fungi of the genera Scytalidium, Verticillium, and Oidiodendron and obligate marine fungi of the genus Dendryphiella are much less abundant. The composition of marine sediments and the anthropogenic load on them were found to influence the abundance and species diversity of fungi, as well as the occurrence of fungal strains producing hemolytically active substances. The biodiversity of mycobiota and the abundance of hemotoxin-producing fungi in marine sediments may be used to evaluate the anthropogenic load on marine biocenoses. Hemolytic compounds were produced by 57% of the fungi isolated from marine sediments. The hemolytic activity of Chaetomium spiculipilium was revealed in the fraction of the culture liquid containing extracellular fatty acids and pigments. The fatty acid composition of this marine fungus was determined.     

Molecular diversity and distribution of marine fungi across 130 European environmental samples

Environmental DNA and culture-based analyses have suggested that fungi are present in low diversity and in low abundance in many marine environments, especially in the upper water column. Here, we use a dual approach involving high-throughput diversity tag sequencing from both DNA and RNA templates and fluorescent cell counts to evaluate the diversity and relative abundance of fungi across marine samples taken from six European near-shore sites. We removed very rare fungal operational taxonomic units (OTUs) selecting only OTUs recovered from multiple samples for a detailed analysis. This approach identified a set of 71 fungal ‘OTU clusters'' that account for 66% of all the sequences assigned to the Fungi. Phylogenetic analyses demonstrated that this diversity includes a significant number of chytrid-like lineages that had not been previously described, indicating that the marine environment encompasses a number of zoosporic fungi that are new to taxonomic inventories. Using the sequence datasets, we identified cases where fungal OTUs were sampled across multiple geographical sites and between different sampling depths. This was especially clear in one relatively abundant and diverse phylogroup tentatively named Novel Chytrid-Like-Clade 1 (NCLC1). For comparison, a subset of the water column samples was also investigated using fluorescent microscopy to examine the abundance of eukaryotes with chitin cell walls. Comparisons of relative abundance of RNA-derived fungal tag sequences and chitin cell-wall counts demonstrate that fungi constitute a low fraction of the eukaryotic community in these water column samples. Taken together, these results demonstrate the phylogenetic position and environmental distribution of 71 lineages, improving our understanding of the diversity and abundance of fungi in marine environments.     

Degradation of Wood Preservatives by Fungi

Wood-inhabiting fungi, not necessarily responsible for major decay, are shown to be capable of degrading a toxic compound into a less potent form, thus rendering it less effective in protecting wood from decay by less-tolerant basidiomycetous wood-destroyers. Sweetgum or pine sapwood blocks treated with preservatives (ammoniacal copper arsenate, fluor-chrome-arsenate-dinitrophenol, a creosote or pentachlorophenol) were exposed progressively to two different wood-inhabiting fungi with sterilization between the first and second exposure. The fungus in the first exposure was usually an Ascomycete or a Fungi Imperfecti-Chaetomium globosum, Phoma, Orbicula, Graphium, Pestalozzia, or Trichoderma species, isolated from wood below the ground. In one experiment, the fungus in the first exposure was a basidiomycete, Lenzites trabea or Polyporus versicolor. The second fungus, a prominent Basidiomycete-Coniophora puteana, Lentinus lepideus, or Lenzites trabea-was the bioassay fungus, since its purpose was to show whether the first fungus had degraded the preservative. Generally, the treated block, except where exposed to another fungus, remained virtually untouched by the bioassay fungus. Clearly, therefore, the first fungus had rendered the preservative ineffective but without appreciably decaying the wood itself Chemical analyses of treated blocks indicated that in the first exposure the fungi had substantially depleted sodium arsenate and pentachlorophenol.     

Role of fungi in marine ecosystems

Marine fungi are an ecological rather than a taxonomic group and comprise an estimated 1500 species, excluding those that form lichens. They occur in most marine habitats and generally have a pantropical or pantemperate distribution. Marine fungi are major decomposers of woody and herbaceous substrates in marine ecosystems. Their importance lies in their ability to aggressively degrade lignocellulose. They may be important in the degradation of dead animals and animal parts. Marine fungi are important pathogens of plants and animals and also form symbiotic relationships with other organisms. The effect of disturbances on marine fungi is poorly investigated. Keystone marine species may exist, especially in mutualistic symbioses. However, as many saprophytes appear to carry out the same function simultaneously, they may be functionally redundant. The need for a concerted effort to investigate the biodiversity and role of marine fungi globally and on as many substrata as possible is presented.     

海洋真菌生物活性物质研究之管见

海洋真菌是活性海洋天然产物的重要来源,到目前为止,已从海洋真菌的发酵产物中分离鉴定了1,117个新化合物。介绍了海洋真菌次生代谢产物的研究历史、现状、特点、研究方法、存在问题及其在新药研究中的应用前景。     

Relationships among wood‐boring beetles,fungi, and the decomposition of forest biomass

A prevailing paradigm in forest ecology is that wood‐boring beetles facilitate wood decay and carbon cycling, but empirical tests have yielded mixed results. We experimentally determined the effects of wood borers on fungal community assembly and wood decay within pine trunks in the southeastern United States. Pine trunks were made either beetle‐accessible or inaccessible. Fungal communities were compared using culturing and high‐throughput amplicon sequencing (HTAS) of DNA and RNA. Prior to beetle infestation, living pines had diverse fungal endophyte communities. Endophytes were displaced by beetle‐associated fungi in beetle‐accessible trees, whereas some endophytes persisted as saprotrophs in beetle‐excluded trees. Beetles increased fungal diversity several fold. Over forty taxa of Ascomycota were significantly associated with beetles, but beetles were not consistently associated with any known wood‐decaying fungi. Instead, increasing ambrosia beetle infestations caused reduced decay, consistent with previous in vitro experiments that showed beetle‐associated fungi reduce decay rates by competing with decay fungi. No effect of bark‐inhabiting beetles on decay was detected. Platypodines carried significantly more fungal taxa than scolytines. Molecular results were validated by synthetic and biological mock communities and were consistent across methodologies. RNA sequencing confirmed that beetle‐associated fungi were biologically active in the wood. Metabarcode sequencing of the LSU/28S marker recovered important fungal symbionts that were missed by ITS2, though community‐level effects were similar between markers. In contrast to the current paradigm, our results indicate ambrosia beetles introduce diverse fungal communities that do not extensively decay wood, but instead reduce decay rates by competing with wood decay fungi.     

Comparative experimental taphonomy of eight marine arthropods indicates distinct differences in preservation potential

Global biodiversity patterns in deep time can only be understood fully when the relative preservation potential of each clade is known. The relative preservation potential of marine arthropod clades, a diverse and ecologically important component of modern and past ecosystems, is poorly known. We tackled this issue by carrying out a 205‐day long comprehensive, comparative, taphonomic experiment in a laboratory by scoring up to ten taphonomic characters for multiple specimens of seven crustacean and one chelicerate species (two true crabs, one shrimp, one lobster, one hermit crab, one stomatopod, one barnacle and one horseshoe crab). Although the results are preliminary because we used a single experimental setup and algal growth partially hampered observations, some parts of hermit crabs, stomatopods, swimming crabs and barnacles decayed slowly relative to other parts, implying differential preservation potentials within species, largely consistent with the fossil record of these groups. An inferred parasitic isopod, manifested by a bopyriform swelling within a hermit crab carapace, decayed relatively fast. We found limited variation in the decay rate between conspecifics, and we did not observe size‐related trends in decay rate. Conversely, substantial differences in the decay rate between species were seen after c. 50 days, with shrimps and stomatopods decaying fastest, suggesting a relatively low preservation potential, whereas the lobster, calico crabs, horseshoe crabs and barnacles showed relatively slow decay rates, suggesting a higher preservation potential. These results are supported by two modern and fossil record‐based preservation potential metrics that are significantly correlated to decay rate ranks. Furthermore, we speculate that stemward slippage may not be ubiquitous in marine arthropods. Our results imply that diversity studies of true crabs, lobsters, horseshoe crabs and barnacles are more likely to yield patterns that are closer to their true biodiversity patterns than those for stomatopods, shrimps and hermit crabs.