Highly repeated DNA sequences in birds: the structure and evolution of an abundant, tandemly repeated 190-bp DNA fragment in parrots.

Up to 6.8% of the parrot (Psittaciformes) genome consists of a tandemly repeated, 190-bp sequence (P1) located in the centromere of many if not all chromosomes. Monomer repeats from 10 different psittacine species representing four subfamilies were isolated and cloned. The intraspecific sequence variation ranged from 1.5 to 7%. The interspecific sequence variation ranged from less than 3% between two species of cockatoos to approximately 45% between cockatoos and other parrots. The monomer sequences of all 10 parrot species contained several conserved (> 90%) sequence elements at identical locations within the repeat. A comparison with tandemly repeated DNA sequences in other avian species showed that several of these conserved elements were also present at similar locations within the 184-bp repeat of the Chilean flamingo (Phoenicopterus chilensis), suggesting a great antiquity of the repeat. One of the elements was also found in the tandemly repeated sequences of the crane (Gruidae) and falcon (Falconidae) families. The data were used for the construction of a partial most parsimonious relationship that supports a regional subdivision of the Psittaciformes.     

The evolution of the spindlin gene in birds: sequence analysis of an intron of the spindlin W and Z gene reveals four major divisions of the Psittaciformes

The Psittaciformes (parrots, parakeets) are among the most widely held captive birds. Yet, their evolution and their phylogenetic relationships have been relatively little studied. This paper describes the phylogenetic relationships between a number of Psittaciformes as derived from the sequences of the third intron of the Z-chromosomal and W-chromosomal spindlin genes. The Z-chromosomal sequences of the kakapo (Strigops habroptilus), the kea (Nestor notabilis), and the kaka (Nestor meridionalis) from New Zealand form a cluster which is the sister group to all other Psittaciformes. The results show further that the Z-chromosomal sequences of the other species can be divided into two groups based on the occurrence of a sequence element ACCCT. The group with the insert (A) is mainly from species with an Australasian geographical distribution and includes such species as the Lories (Lorius, etc.), the budgerigar (Melospittacus undulatus), and the rosellas (Platycercus). It also includes the African lovebirds (Agapornidae), which are the only representative of group A outside Australasia. Group B, without the insert, includes the neotropical parrots and parakeets such as the amazons (Amazona, etc.), the macaws (Ara, etc.), and the conures (Aratinga, etc.), the Australian Cacatuini and the African species such as the African grey parrot (Psittacus erithacus) as well as Coracopsis vasa from Madagascar and Psittrichas fulgidus from New Guinea. The W-chromosomal sequence data show that another division of the Psittacidae is found in the replacement of a pyrimidine-rich segment occurring in many non-psittacines as well as the kakapo (S. habroptilus), the kea (N. notabilis), the kaka (N. meridionalis), and the Cacatuini by a microsatellite consisting of a variable number of TATTA monomers in the other Psittaciformes. The results support a Gondwanan origin of the Psittaciformes and the suggestion that paleogeographic events were a major force in psittacine divergence.     

Diet of Neotropical parrots is independent of phylogeny but correlates with body size and geographical range

Body mass and geographical range are two main drivers of diet in animals, yet how these factors influence diet in the morphologically and ecologically diverse avian group of Psittaciformes is little known. We reviewed current knowledge of the diet of Neotropical parrots and assessed the relation between diet (breadth and composition), phylogeny, body mass and geographical range. Diet has been documented for 98 of 165 species, but information is available only for 34 of 59 threatened species, and countries with high species diversity (> 20 species) had few studies (one to seven). Neotropical parrot species consumed 1293 plant species of 125 families. When assessing the relative frequency of different food items in the diet (seed, fruits, flowers, leaves, nectar, bark and stems), we found that parrots mostly exploited seeds (41.9%) and fruits (38.3%) of native species. Diet overlap was very low among genera (0.006–0.321). At the species level, geographical range and body size explained the variation in diet composition. In particular, small parrots of restricted distribution had a distinct diet composition relative to either large or widely distributed species. Although body size and geographical range showed phylogenetic inertia, diet was independent of phylogenetic history. Our review not only reveals ecological factors explaining diet in a generalist group but also exposes information gaps across the Neotropical region.     

Auditory feedback is necessary for long-term maintenance of high-frequency sound syllables in the song of adult male budgerigars (<Emphasis Type="Italic">Melopsittacus undulatus</Emphasis>)

Among avian species that communicate using vocalization, songbirds (oscine Passeriformes), hummingbirds (Trochiliformes), and parrots (Psittaciformes) are vocal learners. Early studies showed that songbirds require auditory feedback for song development in young and maintenance in adults. To determine whether auditory feedback is also necessary for adult song maintenance in non-passerine species, we deprived adult male budgerigars (Psittaciformes) of auditory input by surgical cochlear removal. Songs of the deafened birds changed within 6 months after auditory deprivation. In postoperative songs, high narrowband syllables, which comprised frequency-modulated narrowband elements with relatively high fundamental frequencies of 2–4 kHz, decreased significantly. High harmonic broadband syllables, with fundamental frequencies ≥2 kHz, also decreased. The altered proportions of syllables were subsequently retained, and maintained 12 months after deafening. The sequence linearity score, a parameter representing the stereotypy of the syllable sequence, was higher than that before deafening. The inter-syllable silence was prolonged. Little change was observed in the songs of intact and sham-operated birds. The significant decrease in high-frequency syllables and song alteration followed by stabilization resembled the results with songbirds, although song stabilization took a long time in budgerigars. Therefore, our results suggest that psittacine budgerigars and oscine songbirds require auditory feedback similarly for adult song maintenance.     

Avian Bornavirus Associated with Fatal Disease in Psittacine Birds

Thanks to new technologies which enable rapid and unbiased screening for viral nucleic acids in clinical specimens, an impressive number of previously unknown viruses have recently been discovered. Two research groups independently identified a novel negative-strand RNA virus, now designated avian bornavirus (ABV), in parrots with proventricular dilatation disease (PDD), a severe lymphoplasmacytic ganglioneuritis of the gastrointestinal tract of psittacine birds that is frequently accompanied by encephalomyelitis. Since its discovery, ABV has been detected worldwide in many captive parrots and in one canary with PDD. ABV induced a PDD-like disease in experimentally infected cockatiels, strongly suggesting that ABV is highly pathogenic in psittacine birds. Until the discovery of ABV, the Bornaviridae family consisted of a single species, classical Borna disease virus (BDV), which is the causative agent of a progressive neurological disorder that affects primarily horses, sheep, and some other farm animals in central Europe. Although ABV and BDV share many biological features, there exist several interesting differences, which are discussed in this review.     

Energetics of New Zealand's temperate parrots

Abstract

As in most parrots (Order: Psittaciformes) studied, New Zealand species have, independent of body mass, high basal rates of metabolism, low thermal conductances, and precisely regulated body temperatures. An analysis of covariance showed that basal rate in parrots correlates with body mass and thermal climate; temperate species have basal rates that are 21% higher than those of tropical species; and New Zealand's parrot have basal rates 32% higher than expected from body mass. Present information suggests that basal rate in parrots appears to be correlated neither with water availability in the environment nor with food habits. High basal rates in parrots are associated with large pectoral muscle masses. The very small pectoral muscle masses of the kakapo, Strigops habroptilus, predict that this flightless parrot has a low basal rate.     

Global trends of habitat destruction and consequences for parrot conservation

Human advance on natural habitats is a major cause of biodiversity loss. This transformation process represents a profound change in wooded environments, disrupting original communities of flora and fauna. Many species are highly dependent on forests, especially parrots (Psittaciformes) with almost a third of their species threatened by extinction. Most parrot species occur in tropical and subtropical forests, and given the forest dependence of most species, this is the main reason why habitat loss has been highlighted as the main threat for the group. Such habitat loss acts in synergy with other important threats (e.g., logging and poaching), which become especially problematic in certain developing countries along tropical latitudes. In this study, we used available information on parrot distributions, species traits, IUCN assessment, habitat loss and timber extraction for different periods, and distribution of protected areas, to determine conservation hotspots for the group, and analyze potential changes in the conservation status of these species. We detected four conservation hotspots for parrots: two in the Neotropics and two in Oceania, all of them facing different degrees of threat in regard of current habitat loss and agricultural trends. Our results suggest that the future of the group is subject to policymaking in specific regions, especially in the northeastern Andes and the Atlantic Forest. In addition, we predicted that agricultural expansion will have a further negative effect on the conservation status of parrots, pushing many parrot species to the edge of extinction in the near future. Our results have conservation implications by recommending protected areas in specific parrot conservation hotspots. Our recommendations to mitigate conservation risks to this group of umbrella species would also benefit many other coexisting species as well.     

Two new parrot species (Psittaciformes) from the early Pliocene of Langebaanweg,South Africa,and their palaeoecological implications

Two new parrot species (Psittaciformes) are described from the early Pliocene Varswater Formation at Langebaanweg, South Africa, an area where no parrots currently are found. A coracoid, humeri, ulnae, carpometacarpi, tibiotarsi and tarsometatarsi of at least four individuals are assigned to a new species of lovebird Agapornis. Additional tarsometatarsi of at least five individuals including a nestling are referred to a new genus and species of Psittacinae, a taxon endemic to Africa comprising the extant genera Poicephalus and Psittacus. Both species form the as yet earliest geological record of parrots in Africa and document the early diversification of the taxa Agapornis and Psittacinae. Evidence for parrots in general, and a putative graminivorous species of lovebird in particular, indicates that woodlands as well as grasslands were present at Langebaanweg during the early Pliocene, which is consistent with current hypotheses on the palaeoenvironment at and around this site.     

Influences on the transport and establishment of exotic bird species: an analysis of the parrots (Psittaciformes) of the world

Most studies of exotic species invasions only consider the factors that affect the establishment of populations following release, yet this is only one step on the invasion pathway. Different factors are likely to influence which species are transported and released. Here, we examine the influence of species traits on the successful transition of species through several stages in the introduction pathway (transport, release, and establishment), using parrots (Aves: Psittaciformes) as a model system. We use a species‐level supertree of parrots to test for phylogenetic auto‐correlation in the introduction process. Our analyses find that different sets of variables are related to the probability that a species enters each stage on the invasion pathway. The availability of individuals for transport and release seems to be most important for passage through these stages, but has no obvious effect on establishment following release. Rather, establishment success is higher for sedentary species, and species with broad diets.     

Venipuncture in psittacine birds

Techniques for jugular, basilic and medial metatarsal venipuncture in psittacine birds are discussed in detail. Although the number of animals used in the US for research annually is documented, birds and laboratory rats and mice are not included. It is presumed that the number of psittacine birds used for scientific purposes is relatively low. Therefore, only limited information is available about clinical techniques applicable to psittacine birds.     

Evolution of craniofacial novelty in parrots through developmental modularity and heterochrony

Parrots (order Psittaciformes) have developed novel cranial morphology. At the same time, they show considerable morphological diversity in the cranial musculoskeletal system, which includes two novel structures: the suborbital arch and the musculus (M.) pseudomasseter. To understand comprehensively the evolutionary pattern and process of novel cranial morphology in parrots, phylogenetic and developmental studies were conducted. Firstly, we undertook phylogenetic analyses based on mitochondrial ribosomal RNA gene sequences to obtain a robust phylogeny among parrots, and secondly we surveyed the cranial morphology of parrots extensively to add new information on the character states. Character mapping onto molecular phylogenies indicated strongly the repeated evolution of both the suborbital arch and the well-developed M. pseudomasseter within parrots. These results also suggested that the direction of evolutionary change is not always identical in the two characters, implying that these characters are relatively independent or decoupled structures behaving as separate modules. Finally, we compared the developmental pattern of jaw muscles among bird species and found a difference in the timing of M. pseudomasseter differentiation between the cockatiel Nymphicus hollandicus (representative of a well-developed condition) and the peach-faced lovebird Agapornis roseicollis (representative of an underdeveloped condition). On the basis of this study, we suggest that in the development of novel traits, modularity and heterochrony facilitate the diversification of parrot cranial morphology.     

New feather mites of the family Pterolichidae (Acari: Pterolichoidea) from parrots (Aves: Psittaciformes) in Australia

Abstract Seven new feather mite species of the family Pterolichidae are described from various Australian parrots: Apexolichus lathami sp. n. from the swift parrot, Lathamus discolor (Shaw); Titanolichus platycerci sp. n. and Rhytidelasma punctata sp. n. from the pale-headed rosella, Platycercus adscitus (Latham); R. striata sp. n. from the Australian king-parrot, Alisterus scapularis (Lichtenstein); Lorilichus stenolobus sp. n. and Lorilichus curvilobus sp. n. from the rainbow lorikeet, Trichoglossus haematodus (Linnaeus); Psittophagus galahi sp. n. from the galah, Eolophus roseicapillus (Vieillot). We give a brief overview of taxonomic studies of pterolichid mites living on Psittaciformes, and discuss the main diagnostic characters of different generic groups of these mites.     

Effects of Metabolic Cage Housing on Rat Behavior and Performance in the Social Interaction Test

Although the metabolic cage is commonly used for housing nonhuman animals in the laboratory, it has been recognized as constituting a unique stressor. Such an environment would be expected to affect behavioral change in animals housed therein. However, few studies have specifically addressed the nature or magnitude of this change. The current study sought to characterize the behavioral time budget of rats in metabolic cage housing in comparison to that of individually housed animals in standard open-top cages. Rats in metabolic cages spent less time moving, manipulating enrichment, and carrying out rearing behaviors, and there was a corresponding shift toward inactivity. In an applied Social Interaction Test, behavioral scoring implied that metabolic cage housing had an anxiogenic effect. In conclusion, metabolic cage housing produces measurable effects on spontaneous and evoked behavior in rats in the laboratory. These behavioral changes may lead to a negative emotional state in these animals, which could have negative welfare consequences. Further research is needed to quantify the existence and magnitude of such an effect on rat well being.     

Jaw and tongue features in Psittaciformes and other orders with special reference to the anatomy of the Tooth-billed pigeon (Didunculus strigirostris)

The parrot (Psittaciformes) show many highly distinctive features of head morphology. Jaw and tongue musculature have been investigated in seven other orders, for most of which parrot affinities have been postulated. The functional properties and evolution of various modifications found in parrots are discussed. Several features seen in the Tooth-billed pigeon ( Didunculus strigirostris ) show a significant trend towards conditions in parrots, favouring the view that the Columbiformes are the order mostly closely related to the Psittaciformes. These features also set Didunculus apart from other pigeons, and it is strongly urged that it be given full family rank.     

The effects of enriching laboratory cages using various physical structures on multiple measures of welfare in singly-housed rats

The single housing of laboratory rats may be recommended in some situations such as hypothesis-driven or test-specific studies, during electroencephalogram recording of phases of sleep and after surgical procedures. However, as single housing of laboratory rats has been shown to be stressful, modification of the housing environment is needed to improve the welfare of these animals. This experiment was carried out to investigate the long-term effects of environmental enrichment on some behavioural, physiological, pathological and psychological measures of welfare. With two batches of animals, 24 rats were housed singly in either enriched cages (EC) (n = 12 cages) or unenriched cages (UC) (n = 12 cages). Behaviour was sampled every week and so was body weight and weight gain over a six-week observation period. Behaviours of the rats in the elevated plus-maze were recorded on the seventh week, whereas organ weights were recorded postmortem. The results revealed that long-term single housing of rats in super-enriched cages increased levels of indicators of good welfare including sleep, exploration, movement and feeding behaviour, body weights, weight gains and the relative weights of the thymus gland and spleen, and decreased levels of indicators of poor welfare such as stationary behaviour and the relative weight of adrenal glands. Thus, enrichment of conventional cages of newly weaned singly-housed laboratory rats with multiple physical structures appeared to improve their ability to control the environment and to promote their species-specific behaviour; changes that can ultimately result in good welfare.     

9TH ANNUAL CENERAL MEETINC OF THE SOUTH AFRICAN ORNITHOLOCICAL SOCIETY,HELD IN THE ZOOLOCICAL CARDENS,JOHANNESBURG, AT 11 A.M. ON SATURDAY, 25TH MARCH, 1939

The genus Poicephalus is one of four genera of parrots found on the African continent. However, little is known about this group of parrots as few studies have been undertaken in the wild and they remain one of the least studied groups of parrots. Decisions on their conservation status and determining appropriate trade quotas are often based on very limited information. Observing and collecting ecological and behavioural data on parrots in their natural habitat is difficult and accordingly the data from wild populations are limited. Genetic markers provide a potential method to obtain data on a species’ ecology, e.g. effective population size and reproductive behaviour, which can assist conservation management. However, developing or screening genetic markers for such investigations can be costly and time consuming and is not guaranteed; these constraints may deter researchers from considering or including them in proposals. This study has characterised 17 microsatellite loci across most species of the African Poicephalus parrots in order to encourage researchers to collect samples and/or to develop genetic studies for Poicephalus parrots. Additional knowledge from wild populations will benefit these little-known parrots.     

Parrots as key multilinkers in ecosystem structure and functioning

Mutually enhancing organisms can become reciprocal determinants of their distribution, abundance, and demography and thus influence ecosystem structure and dynamics. In addition to the prevailing view of parrots (Psittaciformes) as plant antagonists, we assessed whether they can act as plant mutualists in the dry tropical forest of the Bolivian inter‐Andean valleys, an ecosystem particularly poor in vertebrate frugivores other than parrots (nine species). We hypothesised that if interactions between parrots and their food plants evolved as primarily or facultatively mutualistic, selection should have acted to maximize the strength of their interactions by increasing the amount and variety of resources and services involved in particular pairwise and community–wide interaction contexts. Food plants showed different growth habits across a wide phylogenetic spectrum, implying that parrots behave as super‐generalists exploiting resources differing in phenology, type, biomass, and rewards from a high diversity of plants (113 species from 38 families). Through their feeding activities, parrots provided multiple services acting as genetic linkers, seed facilitators for secondary dispersers, and plant protectors, and therefore can be considered key mutualists with a pervasive impact on plant assemblages. The number of complementary and redundant mutualistic functions provided by parrots to each plant species was positively related to the number of different kinds of food extracted from them. These mutually enhancing interactions were reflected in species‐level properties (e.g., biomass or dominance) of both partners, as a likely consequence of the temporal convergence of eco‐(co)evolutionary dynamics shaping the ongoing structure and organization of the ecosystem. A full assessment of the, thus far largely overlooked, parrot–plant mutualisms and other ecological linkages could change the current perception of the role of parrots in the structure, organization, and functioning of ecosystems.     

The parrots (Aves: Psittaciformes) from the Middle Miocene of Sansan (Gers,Southern France)

The occurrence of Archaeopsittacus sp. (Psittaciformes) in the fossil deposits of Sansan (France) is reported, testifying to a survival of this genus in the Middle Miocene, as Archaeopsittacus verreauxi was described from the Early Miocene of Saint-Gérand-le-Puy (France) and was recorded only from its type locality. The data discussed here indicate the presence of two parrot species from Sansan, as it is the type locality of another parrot species, Pararallus dispar, only known from this locality. The differences between the humeri of these two taxa are described in detail, together with the differences from the other European fossil parrot species. The presence of more than one species of parrot in the same locality is not rare, but in Europe it is recorded in Sansan for the second time. Evidence for parrots also confirms the paleoenvironmental reconstruction of Sansan, as parrots are primarily arboreal species. Archaeopsittacus also represents one of the few common elements between the Early and Middle Miocene European bird assemblages.     

Report of the 2006 RSPCA/UFAW Rodent Welfare Group meeting

The RSPCA/UFAW Rodent Welfare Group holds a one-day meeting every autumn to discuss current welfare research and to exchange views on rodent welfare issues. A key aim of the group is to encourage people to think about the lifetime experience of laboratory rodents, ensuring that every potential influence on their well-being has been reviewed and refined. Speakers at the 2006 meeting presented preliminary findings of ongoing studies and discussed regulatory updates. Topics included the housing and husbandry of mice and rats, refining the use of rodents in asthma research, good practice for the euthanasia of rodents using carbon dioxide and achieving reduction by sharing genetically modified mice.     

The use of passerine bird species in laboratory research: implications of basic biology for husbandry and welfare

Passerine birds are important models in fundamental biological research, with as many as 300,000 individuals used in laboratory experiments worldwide annually. However, because the use of passerines is rare compared with that of more conventional laboratory animals, there is often a lack of information about the basic biology and husbandry requirements of these species. We aim to address this deficit by providing an overview of the most salient aspects of passerine biology and their implications for laboratory husbandry and welfare. We start by describing the characteristics that make these birds useful and interesting research subjects. Specifically, we highlight features (e.g., birdsong) of passerine biology that differentiate these birds from more common laboratory animals. Next, we consider the implications of passerine biology for husbandry in the laboratory. Many of the aspects of passerine biology that make these species valuable to scientists are also likely to be affected by environmental variables; a good knowledge of these variables is necessary in order to choose appropriate laboratory conditions for passerines. We outline how the developmental history of the birds and choices of caging, feeding, and environmental regimes might influence their physiology and behavior and thus affect both the welfare of the birds and the quality of the resulting data. We stress the importance of a sound understanding of the biology of any species to ensure good welfare and good science.