The genus Luppovia and the phylogeny of Cretaceous heteromorphic ammonoids

The unique preservation of heteromorphic shells of Luppovia Kakabadze, Bogdanova & Mikhailova 1978 from the Aptian deposits of Bolshoj Balkhan (western Turkmenia) made it possible to study the microstructure, internal shell characteristics and suture ontogeny of this genus. Microstructural investigations revealed that the dorsal shell wall in Luppovia is composed of three layers in contrast to that of monomorphic ammonoids, which is single-layered. This ability of secreting different numbers of layers in monomorphs and heteromorphs demonstrates plasticity of secreting activity of the mantle epithelium. Data obtained from the study of internal shell structure and suture ontogeny have been compared. Both these methods of investigation lead to the conclusion that the genus Luppovia belongs to the order Ammonitida. The results obtained confirm the viewpoint that the Cretaceous heteromorphic superfamilies Turrilitaceae and Ancylocerataceae have independent origins and belong to two different orders, Lytoceratida and Ammonitida, respectively. □ Ammonoidea , Luppovia, shell structure, ontogeny, phylogeny, Cretaceous.     

Aptychi: the myth of the ammonite operculum

Re-examination of ammonite specimens with the aptychus apparently in place closing the aperture has shown that these are accidents of preservation and have been misinterpreted as indicating that aptychi functioned as opercula. There remain no convincing grounds for doubting that aptychi functioned only as lower jaws of ammonites, not as opercula. Chance preservation of exceptional specimens can sometimes be misleading. Ammonoidea, aptychi, anoptychi, functional morphology .     

Aptychi microstructure in Late Cretaceous Ancyloceratina (Ammonoidea)

The microstructure of aptychi (bivalved calcareous coverings on lower jaws) of three genera of Late Cretaceous Ancyloceratina, Baculites, Polyptychoceras and Jeletzkytes is described for the first time on the basis of well-preserved and in situ material from the Western Interior of the USA and Hokkaido, Japan. Optical and scanning electron microscope observations of aptychi on polished median and cross-sections reveal some variation in their relative size, shape and microstructure among the three genera. The aptychus of Baculites is composed of two calcitic layers: one with tilted lamellae and the other one with horizontal lamellae, whereas those of Polyptychoceras and Jeletzkytes consist of a thin layer with horizontal lamellae. Comparison with aptychi (e.g. Laevaptychus) of Jurassic Ammonitina shows that the aptychi of Ancyloceratina differ from those of Jurassic Ammonitina in the smaller number of layers and the absence of a sponge-like structure. We propose for the first time growth models for a sponge-like aptychus of Jurassic Ammonitina and the lamellar aptychus of Cretaceous Ancyloceratina. The remarkable microstructural variation of aptychi observed in Mesozoic Ammonoidea is probably related to the diversity of their modes of feeding and the secondary function of the lower jaws as opercula.     

Double function of aptychi (Ammonoidea) as jaw elements and opercula

Lehmann, U. & Kulicki, C. 1990 10 15: Double function of aptychi (Ammonoidea) as jaw elements and opercula. Lethaia , Vol. 23, pp. 325–331. Oslo. ISSN 0024–1164.
Aptychi are calcitic coverings on the outer surface of organic ammonite lower jaws. They are similar in shape to that of the corresponding ammonite apertures. This observation and additional features of many aptychi are in harmony with their former interpretation as protective opercula. We suggest that they served as opercula in addition to functioning as jaws. The primary function of the lower jaws was thus secondarily extended to that of protective shields when they acquired their calcitic covering, while as lower jaws their importance dwindled to that of a more passive abutment. Phylogenetically, this seems to have started slowly in some anaptychi and became obvious with the first aptychi. ▭ Ammonites, aptychus, operculum, jaw apparatus, evolution, function .     

The black layer in cephalopods from the German Muschelkalk (Triassic)

Thin, dark, probably phosphatic coatings were found on the dorsum in front of and sometimes behind the aperture of 50 specimens of Paraceratites and Ceratites (Ammonoidea) belonging to 14 species and subspecies and in three specimens of Germanonautilus , all from the Middle Triassic of Germany. The proportions, occurrences, position, outline, and preservation in fossil Nautiloidea and Ammonoidea (originally organic matter) of this structure support the hypothesis that it is homologous with the black layer in Recent Nautilus and Allonautilus . It is not yet possible to test whether these cephalopods show homologous styles of the development of these structures or whether the black layer can be identified in a common ancestor. In contrast to many ammonoids, Ceratites and Paraceratites , most Palaeozoic ammonoids, and some Mesozoic ammonoids probably did not have lower mandibles that were suitable for the closure of the aperture. They probably possessed a dorsally extending mantle (supracephalic mantle fold) and a hood, as in Recent Nautilus and Allonautilus , that was attached to the black layer. This interpretation is corroborated by a similar morphology of the black layer in an adult specimen of the nautilid Cenoceras from the South German Middle Jurassic and three specimens of Germanonautilus from the South German Middle Triassic (both Nautiloidea).     

Soft‐tissue imprints in fossil and Recent cephalopod septa and septum formation

Several soft‐tissue imprints and attachment sites have been discovered on the inside of the shell wall and on the apertural side of the septum of various fossil and Recent ectocochleate cephalopods. In addition to the scars of the cephalic retractors, steinkerns of the body chambers of bactritoids and some ammonoids from the Moroccan and the German Emsian (Early Devonian) display various kinds of striations; some of these striations are restricted to the mural part of the septum, some start at the suture and terminate at the anterior limit of the annular elevation. Several of these features were also discovered in specimens of Mesozoic and Recent nautilids. These structures are here interpreted as imprints of muscle fibre bundles of the posterior and especially the septal mantle, blood vessels as well as the septal furrow. Most of these structures were not found in ammonoids younger than Middle Devonian. We suggest that newly formed, not yet mineralized (or only slightly), septa were more tightly stayed between the more numerous lobes and saddles in more strongly folded septa of more derived ammonoids and that the higher tension in these septa did not permit soft‐parts to leave imprints on the organic preseptum. It is conceivable that this permitted more derived ammonoids to replace the chamber liquid faster by gas and consequently, new chambers could be used earlier than in other ectocochleate cephalopods, perhaps this process began even prior to mineralization. This would have allowed faster growth rates in derived ammonoids.     

Meta-analysis of character utility and phylogenetic information content in cladistic studies of ammonoids

While previous workers have argued persuasively that ammonoid workers should use cladistic approaches to reconstruct phylogeny, relatively few cladistic studies have been published to date. An essential yet challenging part of cladistic analysis is the selection of characters. Are certain types of characters more likely to show homoplasy? Are certain aspects of shell anatomy more likely to contain phylogenetically informative characters? Are datasets with more characters inherently better? To answer these questions, a meta-analysis of character data from published ammonoid phylogenies was performed. I compiled 14 datasets, published between 1989 and 2007, representing parsimony-based phylogenetic analyses of ammonoids. These studies defined a combined total of 323 characters, which were grouped into categories reflecting different aspects of anatomy: shell size and shape, ornament, suture, early ontogeny, body chamber and apertural modifications. Tree searches were re-run to determine overall tree statistics, parsimony permutation tail probability (PTP) tests were calculated to assess the phylogenetic information content of the matrices, and retention and rescaled consistency indices for each character were calculated. My analyses revealed that studies with higher character/taxon ratios did not necessarily produce trees with more information content and less homoplasy, as measured by retention or rescaled consistency indices, because additional characters were often parsimony-uninformative. Rather, studies with relatively few characters could produce high-quality trees if the characters were well-chosen and character states carefully defined. Characters related to the body chamber and adult aperture typically had retention indices of either 0 or 1, rarely in between, indicating that they either worked perfectly or not at all. Suture characters tended to have higher indices than shell shape or ornament characters, suggesting more phylogenetic information and less homoplasy in the suture line than in shell traits. These results should aid in the selection of characters for future cladistic studies of ammonoids.     

Microstructure of aptychi of Upper Jurassic (Upper Oxfordian) ammonites from Central Russia

To date, bivalve calcitic plates which cover the outer chitinous lamella of the lower jaws of Jurassic and Cretaceous ammonoids (aptychi sensu stricto) have been classified into several morphotypes (form genera) based on shape, surface sculpture and internal microstructure. However, previous works on aptychi microstructure focused mainly on thick morphotypes (e.g. Laevaptychus and Lamellaptychus), whereas little was investigated for thin Praestriaptychi. In this study, the microstructure of Praestriaptychi of Upper Oxfordian Perisphinctes and of recently discovered aptychi of aspidoceratid microconch Mirosphinctes (both belonging to the superfamily Perisphinctoidea) is described. These aptychi are compared with Laevaptychi of Upper Oxfordian macroconchs Euaspidoceras (a dimorphic counterpart of Mirosphinctes). This study demonstrated that the aptychi of Perisphinctes and Mirosphinctes differ from each other and from Laevaptychi in their microstructure, number of calcitic layers and in growth patterns. The aptychi of both aspidoceratid dimorphs are similar in terms of growth pattern, but differ in microstructure and the number of calcitic layers. Neither aptychi of Perisphinctes nor of Mirosphinctes have a tubular layer with a honeycomb surface pattern, which is typical for Laevaptychus. This indicates that aptychi were extremely diverse and their microstructure varied significantly not only within the superfamily, but even within a dimorphic pair of aspidoceratid ammonites. A lack of a tubular layer in Praestriaptychus indicates that it developed independently in Lamellaptychus of Haploceratoidea and Laevaptychus of Aspidoceratidae.     

Post-hatching early life history of Cretaceous Ammonoidea

Post-hatching early life histories in Cretaceous Ammonoidea are discussed on the basis of density calculations of the shells in 71 species belonging to four separate suborders. The calculation was made under the assumption that a newly hatched ammonoid had a gas-filled chamber and a succeeding body-filled whorl terminating at the primary constriction. The results show that the density of the species examined at the hatching stage is almost constant and is relatively smaller than that of seawater, i.e. the animals are positively buoyant. This fact strongly suggests a planktic mode of life. In all species, the density increases gradually with growth and attains neutral buoyancy at 2.C2.5 mm in shell diameter. Thus, most ammonoids probably changed their mode of life from planktic to nektoplanktic or nektobenthic at this critical point. The rare occurrence of newly hatched specimens (ammonitellas) in many ammonoid assemblages may also support this interpretation. Planktic duration of a newly hatched ammonoid might be regulated by the animal's density at hatching, shell growth pattern, cameral volume (or hatching size), and rate of cameralliquid removal (or siphuncle diameter). The latter two seem to be very important factors in determining the biogeographical framework of species, as demonstrated in the Tetragonitaceae.□ Cretaceous, Ammonoidea, density calculation, early life history .     

Sutural amplitude of ammonite shells as a paleoenvironmental indicator

The Sutural Amplitude Index (SAI), obtained by measuring the maximum height of sutural elements and the length of the suture pattern on ammonoid shells, provides a useful indicator of relative habitat depth for ammonoids with similar shell morphotypes. A higher SAI indicates greater septal support for the shell wall against implosion under increased hydrostatic pressures in deeper waters. Relating the sutural amplitude indices of ammonites found in a well-studied depositional basin, such as the Cretaceous Western Interior Seaway, to morphotype distributions illustrates the utility of this index in bathymetric interpretations. □ Ammonoidea, sutures, Sutural Amplitude Index, Cretaceous, Greenhorn Cyclothem. Western Interior.     

First direct evidence of ammonoid ovoviviparity

Ammonoids had high evolutionary rates and diversity throughout their entire history and played an important role in the high‐resolution sub‐division of the Mesozoic, but much of their palaeobiology remains unclear, including the brooding habitat. We present our study of the first recorded ammonite embryonic shell clusters preserved with calcified embryonic aptychi in situ within the body chambers of mature macroconch shells of the Early Aptian (Early Cretaceous) ammonite Sinzovia sazonovae. The following support the idea that the clusters are egg masses, which developed inside ammonite body chambers: the absence of post‐embryonic shells and any other fossils in these clusters, the presence of the aptychi in all embryonic shell apertures and peculiarities of adult shells preservation. These facts confirm earlier speculations that at least some ammonoids could have been ovoviviparous and that, like many modern cephalopods, they could have reproduced in mass spawning events. The aptychi of ammonite embryonic shells are observed here for the first time, indicating that they were already formed and calcified before hatching. Our results are fully congruent with the peculiar modes of ammonoid evolution: quick recovery after extinctions, distinct evolutionary rates, pronounced sexual dimorphism and the nearly constant size of embryonic shells through ammonoid history. We assume that adaptation to ovoviviparity may be the reason for the presence of these features in all post‐Middle Devonian ammonoids.     

The A-mode sutural ontogeny in prolecanitid ammonoids

The generally accepted theory of a U-mode sutural ontogeny of prolecanitid ammonoids and their descendants is refuted. The basic suture formula of the order Prolecanitida is E A L U I (not E L U₂ U₁ I), resembling that of derived members of the suborder Tornoceratina (their phylogenetic ancestors), and of the suborder Goniatitina. During phylogeny of the prolecanitids, secondary umbilical lobes are introduced and lead to multilobate forms. In early ceratites, the original L lobe disappeared, and an increase in sutural elements took place by the introduction of supplementary U lobes. Consequently, sutural nomenclature of Permian ceratites and Mesozoic ammonoids has to be modified.     

Quantification of ontogenetic allometry in ammonoids

Ammonoids are well‐known objects used for studies on ontogeny and phylogeny, but a quantification of ontogenetic change has not yet been carried out. Their planispirally coiled conchs allow for a study of “longitudinal” ontogenetic data, that is data of ontogenetic trajectories that can be obtained from a single specimen. Therefore, they provide a good model for ontogenetic studies of geometry in other shelled organisms. Using modifications of three cardinal conch dimensions, computer simulations can model artificial conchs. The trajectories of ontogenetic allometry of these simulations can be analyzed in great detail in a theoretical morphospace. A method for the classification of conch ontogeny and quantification of the degree of allometry is proposed. Using high‐precision cross‐sections, the allometric conch growth of real ammonoids can be documented and compared. The members of the Ammonoidea show a wide variety of allometric growth, ranging from near isometry to monophasic, biphasic, or polyphasic allometry. Selected examples of Palaeozoic and Mesozoic ammonoids are shown with respect to their degree of change during ontogeny of the conch.     

AMMONOIDS ACROSS THE PERMIAN/TRIASSIC BOUNDARY: A CLADISTIC PERSPECTIVE

Abstract:  The rapid diversification of ceratitid ammonoids during the earliest Mesozoic has been taken at face value as an example of explosive radiation following the Permian/Triassic mass extinction. However, the validity of this interpretation has never been tested within a phylogenetic framework. A total evidence cladistic analysis of Mid–Late Permian and Induan (earliest Triassic) ammonoids confirms the monophyly of the Ceratitida. Partitioned phylogenetic analysis of suture line characters vs. shell shape and ornament characters confirms the importance of suture-line characters for resolving the higher taxonomy of ammonoids. When the cladogram is compared with the observed fossil record, the resultant tree implies that the divergence of a number of early Triassic lineages actually occurred during the latest Permian. If these range extensions are taken into account the ammonoid per-genus extinction rate across the Permian/Triassic boundary drops from c. 85 per cent to c. 60 per cent.     

Homologie und Taxonomie

Zusammenfassung Morphogenetische Untersuchungen ermöglichen eine zuverlässige Ermittlung der homologen Elemente in der Lobenlinie der Ammonoidea. Umgekehrt lehrt eine Analyse hypothetischer Vorstellungen, die man sich über die phylogenetischen Zusammenhänge gewisser Ammoneen-Gruppen gebildet hatte, daß sich daraus die Homologie-Beziehungen nicht herleiten lassen. Es besteht keine Konkordanz zwischen den morphologischen Tatbeständen und den stammesgeschichtlichen Konstruktionen, die sich in diesen Fällen als falsch erweisen. Daraus wird der Schluß gezogen, daß der Homologie-Begriff nur unvoreingenommen morphologisch definiert und interpretiert werden kann. Die auf morphologischer Grundlage ermittelten Homologien entscheiden über die Möglichkeit stammesgeschichtlicher Verknüpfungen, nicht aber umgekehrt phylogenetische Deutungen über die Homologie. Ebenso kann die stets unsichere Phylogenie nicht zur Grundlage der Systematik gemacht werden. Auch da liegen die logisch-methodischen Zusammenhänge umgekehrt: Die im System ausgedrückte Formverwandtschaft ist die Basis der Phylogenie und nicht die Phylogenie die der Morphologie. Die Theorie eines Phylogenetischen Systems der Organismen wird abgelehnt.

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Summary Morphogenetic investigations provide a firm basis for an exact identification of homologous elements in the suture line of ammonoids. On the other hand an analysis of current phylogenetic connections of certain ammonoid groups demonstrates that they give no clue for tracing homologies. There is no agreement between the morphological facts and the phylogenetic fictions, the latter in these cases being definitely wrong. Therefrom it is concluded that the concept of homology can only be defined and interpreted on a morphological basis. The established homologies are decisive for the admissibility of phylogenetic connections and not phylogenetic inferences for the recognition of homologies. In the same manner systematics cannot be based on the always unsafe phylogeny, but only on the actual facts of morphology. The concept of a phylogenetic classification of organisms is rejected.

     

Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies

In order to understand the evolution of enzyme reactions and to gain an overview of biological catalysis we have combined sequence and structural data to generate phylogenetic trees in an analysis of 276 structurally defined enzyme superfamilies, and used these to study how enzyme functions have evolved. We describe in detail the analysis of two superfamilies to illustrate different paradigms of enzyme evolution. Gathering together data from all the superfamilies supports and develops the observation that they have all evolved to act on a diverse set of substrates, whilst the evolution of new chemistry is much less common. Despite that, by bringing together so much data, we can provide a comprehensive overview of the most common and rare types of changes in function. Our analysis demonstrates on a larger scale than previously studied, that modifications in overall chemistry still occur, with all possible changes at the primary level of the Enzyme Commission (E.C.) classification observed to a greater or lesser extent. The phylogenetic trees map out the evolutionary route taken within a superfamily, as well as all the possible changes within a superfamily. This has been used to generate a matrix of observed exchanges from one enzyme function to another, revealing the scale and nature of enzyme evolution and that some types of exchanges between and within E.C. classes are more prevalent than others. Surprisingly a large proportion (71%) of all known enzyme functions are performed by this relatively small set of 276 superfamilies. This reinforces the hypothesis that relatively few ancient enzymatic domain superfamilies were progenitors for most of the chemistry required for life.     

THE HETEROMORPHS AND AMMONOID EXTINCTION

The heteromorph ammonoids are quoted as a favourite example of degeneration and the decline of a Bauplan‘condemned’ to extinction. With astonishing tenacity this view of the heteromorphs as ‘phylogenetic end-forms’ has embedded itself in the palaeontological literature and is still current. This is contradicted by the most recent investigations, directed especially at the Cretaceous heteromorphs, which necessitate correction of the typolysis concept as well as modification of the most uncontested of the phylogenetic ‘laws’, Dollo's ‘law of irreversibility’. Contrary to the usual textbook hypothesis, the heteromorphs return in several evolutionary lineages to normal coiling of the shell and, in general, to a phylogenetically older type of suture line. At the same time these results encourage fresh reflexion on possible exogenous causes of phylogenetic extinction of the ammonoids. A clear causal connexion exists between this extinction and the far-reaching epirogenic changes in sea level in the late Cretaceous; cosmic explanations are unnecessary. In conclusion it may be added that the precipitate formulation of phylogenetic ‘laws’ and ‘principles’ based on too little basic information has encumbered this branch of palaeontology with a stifling set of prejudices rather than providing it with guide lines crystallized from long experience and observation. It is vitally necessary in the interests of palaeontology that interpretation and observation be separated far more than has been the case in the past.     

A comprehensive examination of protein sequences for evidence of internal gene duplication

Summary We have implemented a routine procedure for screening protein sequences for evidence of intragenic duplications. We tested 163 protein sequences representing 116 superfamilies of unrelated proteins. Twenty superfamilies contain proteins with internal gene duplications. The intragenic duplications detected can be divided into two major types. (1) One or more duplications of all or part of a gene produce a protein with two or several detectable regions of sequence homology. Sequences from 18 superfamilies contained this type of duplication. (2) Repeated reduplication of a small DNA segment can produce a protein that is repetitive over most of its length. Three superfamilies contain such repetitive sequences. We also investigated the limits of detection of ancient duplications using sequences derived by random mutation of a model sequence consisting of ten 10-residue repeats. The original repetitive nature of the sequence was usually detected after 250 point mutations even though the ancestral segment could not be accurately reconstructed.     

Immunological responses from brachiopod skeletal macromolecules; a new technique for assessing taxonomic relationships using shells

The phylogenetic relationships of living, calcareous-shelled brachiopods have been assessed on the basis of immunological responses from intracrystalline macromolecules. Calculations of immunological distances between representatives of the order Terebratulida have revealed a primary threefold division which correlates precisely with a proposed subdivision of the order into three superfamilies but refutes attempts to establish a fourth superfamily. This conclusion was confirmed by carrying out immunological investigations of small shell fragments from other brachiopod genera which were so rare that no antisera could be prepared. The immunological results also indicate a fundamental subdivision of the long-looped brachiopods, with one group perhaps being derived from short-looped terebratuloids rather than long-looped terebratelloids. Sero-taxonomy of skeletal macromolecules provides an ideal method of acquiring molecular phylogenetic data in many groups because a large number of taxa can be surveyed in a short period of time, and microscopic pieces of shell contain sufficient antigenic determinants for many reactions. The technique can also be applied to specimens which have been stored without special treatment in museum collections, making the technique particularly applicable to rare taxa for which no other form of molecular data is available. □ Immunology, Brachiopoda, taxonomy, intracrystalline molecules.     

Thriving at high hydrostatic pressure: the example of ammonoids (extinct cephalopods)

Ammonoids are a group of extinct mollusks belonging to the same class of the living genus Nautilus (cephalopoda). In both Nautili and ammonoids, the (usually planospiral) shell is divided into chambers separated by septa that, during their lifetime, are filled with gas at atmospheric pressure. The intersection of septa with the external shell generates a curve called the suture line, which in living and most fossil Nautili is fairly uncomplicated. In contrast, suture lines of ancient ammonoids were gently curved and during the evolution of the group became highly complex, in some cases so extensively frilled as to be considered as fractal curves. Numerous theories have been put forward to explain the complexity of suture ammonoid lines. Calculations presented here lend support to the hypothesis that complex suture lines aided in counteracting the effect of the external water pressure. Additionally, it is suggested that complex suture lines diminished shell shrinkage caused by water pressure, and thus aided in improving buoyancy. Understanding the reason for complex sutures in ammonoids represents an important issue in paleobiology with potential applications to the problem of the resistance of hollow mechanical structures subjected to high pressure.