Investigation of the budding process in Tethya citrina and Tethya aurantium (Porifera, Demospongiae)

The budding process has been studied in two congeneric Mediterranean species belonging to Tethya from different sampling sites: Marsala and Venice Lagoons (Tethya citrina); Marsala Lagoon and Porto Cesareo Basin (Tethya aurantium). Buds, connected to the adult by a spiculated stalk, differ between the two species in morphology and size, since those of T. citrina are small with elongated bodies, showing only a few spicules protruding from the apical region, whereas those of T. aurantium are round, larger, and show spicules radiating from the peripheral border. In T. citrina, cells with inclusions, varying in electron density and size, represent the main cell types of the buds. In T. aurantium, the cell component shows a major diversification, resulting from spherulous cells, grey cells, vacuolar cells and peculiar micro-vesicle cells. Neither canals nor choanocyte chambers were observed in the buds of the two species. In T. citrina, bud production is similar in both sampling sites. In T. aurantium, budding occurs more rarely in Porto Cesareo Basin, probably in relation with environmental factors, such as the covering of the cortex by sediment and micro-algae. Finally, in the buds of both species, the spicule size does not differ from that of the cortex of the adult sponges, further supporting the main involvement of the cortex in organizing the skeletal architecture of the buds.     

Polychaete assemblages of the northwestern Ross Sea shelf: worming out the environmental drivers of Antarctic macrobenthic assemblage composition

We have limited understanding of which environmental factors structure the distribution patterns and composition of Antarctic macrobenthos assemblages, and the spatial scales on which such factors operate. In 2004, the “BioRoss Survey” was conducted on the northwestern Ross Sea shelf between Cape Adare and Cape Hallett in depths of 50–750 m to describe and quantify the assemblage patterns of benthic macroinvertebrates. In order to determine the influence of primary productivity, disturbance and habitat heterogeneity on the distribution and composition of the macrofaunal assemblages, polychaete data derived from 52 grab samples were analysed. Although differences in the composition of polychaete assemblages among different sampling transects and depth strata were not particularly pronounced (yet statistically significant), the results suggested that large-scale differences in both primary productivity and iceberg disturbance influence distribution patterns. The combination of sediment chl a content, sorting coefficient, sponge spicule content and distance to the nearest iceberg scour best explained polychaete assemblage patterns. This finding supports previous contentions that multiple environmental drivers working at varying scales influence Antarctic shelf assemblages. The results do not supply support for a pronounced decoupling of pelagic and benthic systems, as has been suggested by another study of deeper water benthic assemblages on the Ross Sea shelf.     

Reproductive cycles of the sympatric excavating sponges Cliona celata and Cliona viridis in the Mediterranean Sea

Abstract. Clionaids are excavating sponges, which live in and grow into calcareous substrates. We studied the sexual reproductive cycles of two clionaid sponges coexisting in a Mediterranean coastal basin (Porto Cesareo, Italy), Cliona viridis and Cliona celata, by analyzing monthly tissue samples of ten specimens of each species collected over a 2‐year period. From May to June of the second study year, supplementary samples were taken weekly. Up to 90% of the specimens of C. viridis and 70% of those of C. celata sampled were reproductive during the study. In both species, but particularly in C. viridis, reproductive investment, measured as the percentage of sponge tissue occupied by gametes, was high. Oocytes were present almost year‐round in both species, except for a 1–4‐month period after zygote release. In contrast, spermatogenesis occurred most frequently in May in both species, when (May–June) oocytes reached their greatest diameters. Cliona viridis and C. celata are hermaphrodites, with oocytes and spermatic cysts coexisting in 10% of the studied individuals in the first year of the study, and in 30% during the second. No developing embryos or larvae were incubated in the sponge tissues, and fertilization was not observed. Temperature may play a role in triggering some important phases of the reproduction of these Cliona, such as oocyte maturation and spermatogenesis, which occurred when water temperature increased from 17°C to 25°C between May and June.     

Effect of disturbance on assemblages: an example using porifera

Extensive sponge assemblages are found in a number of habitats at Lough Hyne Marine Nature Reserve. These habitats are unusual in experiencing a range of environmental conditions, even though they are only separated by small geographic distances (1-500 m), reducing the possibility of confounding effects between study sites (e.g., silica concentrations and temperature). Sponge assemblages were examined on ephemeral (rocks), stable (cliffs), and artificial (slate panels) hard substrata from high- and low-energy environments that were used to represent two measures of disturbance (flow rate and habitat stability). Sponge assemblages varied considerably between habitat types such that only 26% (25 species) of species reported were common to both rock and cliff habitats. Seven species (of a total of 96 species) were found in the least-developed assemblages (slate panels) and were common to all habitats. Sponge assemblages on rocks and panels varied little between high- and low-energy environments, whereas assemblages inhabiting cliffs varied considerably. Assemblage composition was visualized using Bray-Curtis similarity analysis and Multi-Dimensional Scaling, which enabled differences and similarities between sponge assemblages to be visualized. Cliffs from high- and low-energy sites had different assemblage compositions compared to large rocks, small rocks, and panels, all of which had similar assemblages irrespective of environmental conditions. Differences in assemblages were partially attributed to sponge morphology (shape), as certain morphologies (e.g., arborescent species) were excluded from 2-D rock habitats. Other mechanisms were also considered responsible for the sponge assemblages associated with different habitats.     

Do life history traits account for diversity of polychaete annelids?

Abstract. Within many phylogenetic assemblages, a pattern of domination has been observed: one or a few clades have had many more speciation events or fewer extinctions than other clades in a particular assemblage. We investigated this phenomenon in the polychaete annelids. Polychaetes comprise ∼9000 described species classified in over 70 families and exhibit a great variety of life history strategies. Our goal was to test whether diverse polychaete families are characterized by species with short generation times, high reproductive output, small body size, or with planktotrophic larval development. Each of these factors has been advanced as cause for high diversity in other taxonomic assemblages. Here, we establish that the diversification pattern of polychaete families is non-random, but the data collected show no significant correlations between familial diversity and several life history traits including age at first reproduction, life span, body size, fecundity, and egg size. Pairwise comparisons of sister families do not reveal any trends between familial diversity and any of the life history traits. The great variability of life history traits within polychaete families may explain the lack of significant results; perhaps no trends are seen because polychaete life history traits cannot be generalized at the family level.     

Polychaete assemblages and sediment pollution in a harbour with two opposing entrances

The harbour at Ceuta is one of the most important harbours in the Strait of Gibraltar. The sediments are moderately polluted with organic matter and heavy metals but the harbour has two opposing entrances and a connecting channel which increases water renewal and dissolved oxygen across the harbour. For these special conditions, the value of the soft bottom polychaete community as a bioindicator, and possible advantages of the presence of two harbour entrances on biotic assemblages, were studied. Twenty-one stations were selected, and 27 variables were measured in the sediment of each station. The polychaete species richness and Shannon diversity values were similar inside and outside the harbour. Nevertheless, the Pielou evenness index was significantly higher in the external stations due to high densities of some species of polychaetes such as Pseudomalacoceros tridentata and Capitella capitata inside the harbour. The multivariate approach based on polychaete species composition was much more sensitive than univariate analyses at discriminating between internal and external stations. The pollution gradient and granulometric parameters were the main factors affecting polychaete distribution. Polychaete species richness and diversity in sediments inside Ceuta harbour were higher than in conventional harbours due to the positive effects of increased water renewal. These results should be taken into consideration in design, construction and remodelling of future harbours.Communicated by: H.-D. Franke     

Implications of Sponge Biodiversity Patterns for the Management of a Marine Reserve in Northern Australia

Marine reserves are becoming progressively more important as anthropogenic impacts continue to increase, but we have little baseline information for most marine environments. In this study, we focus on the Oceanic Shoals Commonwealth Marine Reserve (CMR) in northern Australia, particularly the carbonate banks and terraces of the Sahul Shelf and Van Diemen Rise which have been designated a Key Ecological Feature (KEF). We use a species-level inventory compiled from three marine surveys to the CMR to address several questions relevant to marine management: 1) Are carbonate banks and other raised geomorphic features associated with biodiversity hotspots? 2) Can environmental (depth, substrate hardness, slope) or biogeographic (east vs west) variables help explain local and regional differences in community structure? 3) Do sponge communities differ among individual raised geomorphic features? Approximately 750 sponge specimens were collected in the Oceanic Shoals CMR and assigned to 348 species, of which only 18% included taxonomically described species. Between eastern and western areas of the CMR, there was no difference between sponge species richness or assemblages on raised geomorphic features. Among individual raised geomorphic features, sponge assemblages were significantly different, but species richness was not. Species richness showed no linear relationships with measured environmental factors, but sponge assemblages were weakly associated with several environmental variables including mean depth and mean backscatter (east and west) and mean slope (east only). These patterns of sponge diversity are applied to support the future management and monitoring of this region, particularly noting the importance of spatial scale in biodiversity assessments and associated management strategies.     

A sponge diversity centre within a marine ‘island’

The exposed and gulf-stream warmed south-west coast of Ireland has a Lusitanean fauna composed of elements of the colder waters to the north and east, and others from the warmer Mediterranean Sea. Lough Hyne, a small marine body, is unusual on this coast in being very sheltered, but also in being characterised by many different niches within a small space (1 km²). Sponges are particularly abundant, morphologically varied and more than 100 species have been described. Species diversity was measured at 6 m intervals on vertical and inclined profiles (to a maximum of 30 m) at six sites, spanning a range of flow rate and sedimentation regimes. Diversity, richness, evenness and density varied significantly with both flow regime and depth, but was much lower on the surrounding Atlantic coast. Four different sponge communities were differentiated on the basis of sponge species assemblages which correlated with different environmental conditions. At sites of turbulent and fast flow conditions, sponge diversity and richness were lowest, with the highest values being found at the sites of moderate and high sedimentation. Significant differences were observed in all four ecological variables with respect to substratum angle with the exception of the site experiencing the most turbulent flow conditions. Lough Hyne was found to possess the second highest sponge species diversity (H=3.626) and richness (77 species) of all available figures from temperate, polar and tropical areas (of similar sized sampling area). The uniqueness, diversity and species composition of the sponge community at this location suggests Lough Hyne is, biologically, a marine island within the island of Ireland.     

Polychaete community structure of the northwestern coast of Mexico: patterns of abundance and distribution

In August 1998, 72 benthic stations were sampled off the northwestern coast of Mexico. A baseline survey of the polychaete macrofauna was carried out for the southernmost portion of the Southern California Bight (SCB) region. Spatial patterns of polychaete assemblages were characterized to determine evidence of environmental impact from point sources of wastewater discharge near the study area, and to define a standard against which to detect future change. A total of 4231 polychaetous annelids representing 38 families and 210 species were identified, which constituted 53% of the total macrofauna. Families with highest species richness were Spionidae (18 spp.), Onuphidae (15 spp.), and Terebellidae (14 spp.). Species with greatest abundances were Spiophanes duplex (490 ind.), Spiophanes fimbriata (330 ind.), Lanassa sp. D (209 ind.), Pectinaria californiensis (138 ind.), and Euclymeninae sp. A (124 ind.). Based on polychaete assemblages, communities for the southernmost SCB were found to be composed primarily of non-opportunistic species, and no numerically dominant species were found. High values of polychaete diversity (H) indicated the majority of the area of study could be considered an undisturbed environment. Principal Components Analysis (PCA) applied to environmental and faunistic parameters indicated depth, organic carbon, and sediment grain size as the main influences determining the polychaete faunal communities.     

The distribution and abundance of soft-sediment macrobenthos around Casey Station, East Antarctica

Grab samples of shallow (5–35 m) marine benthic sediments and epi- and infaunal assemblages were taken from nearshore regions around Casey Station, Windmill Islands, East Antarctica. A hierarchical, spatially nested sampling design was used with locations (kilometres apart), sites (hundreds of metres apart) and plots (tens of metres). Two potentially impacted, polluted locations (adjacent to a sewage outfall and an old garbage tip) were compared with two control locations in an asymmetrical design. Significant differences in assemblages were found between locations and between sites within locations. Significant differences in the abundances of taxa at several taxonomic levels (species, family, order, phylum) were found at all three spatial scales. Significant differences were also detected between the polluted and control locations. Compared with other Antarctic locations, the assemblages were dominated by crustaceans (90–97% of individuals) and there was a paucity of polychaete fauna at the locations sampled. Accepted: 3 June 2000     

Reduced Diversity and High Sponge Abundance on a Sedimented Indo-Pacific Reef System: Implications for Future Changes in Environmental Quality

Although coral reef health across the globe is declining as a result of anthropogenic impacts, relatively little is known of how environmental variability influences reef organisms other than corals and fish. Sponges are an important component of coral reef fauna that perform many important functional roles and changes in their abundance and diversity as a result of environmental change has the potential to affect overall reef ecosystem functioning. In this study, we examined patterns of sponge biodiversity and abundance across a range of environments to assess the potential key drivers of differences in benthic community structure. We found that sponge assemblages were significantly different across the study sites, but were dominated by one species Lamellodysidea herbacea (42% of all sponges patches recorded) and that the differential rate of sediment deposition was the most important variable driving differences in abundance patterns. Lamellodysidea herbacea abundance was positively associated with sedimentation rates, while total sponge abundance excluding Lamellodysidea herbacea was negatively associated with rates of sedimentation. Overall variation in sponge assemblage composition was correlated with a number of variables although each variable explained only a small amount of the overall variation. Although sponge abundance remained similar across environments, diversity was negatively affected by sedimentation, with the most sedimented sites being dominated by a single sponge species. Our study shows how some sponge species are able to tolerate high levels of sediment and that any transition of coral reefs to more sedimented states may result in a shift to a low diversity sponge dominated system, which is likely to have subsequent effects on ecosystem functioning.     

Spatiotemporal variation in benthic polychaetes (Annelida) and relationships with environmental variables in a tropical estuary

Annelida constitute a dominant functional component in soft-bottom macrobenthic communities and reveal a wide range of adaptability to different marine and coastal habitats. Analyses in different polychaete assemblages and their responses to habitat conditions reflect the biological effects of marine pollution and habitat disturbance. The present study is designed to study colonization and community structure of polychaetes in two ecologically distinct locations of the Sundarban Biosphere Reserve on the northeast coast of India. Polychaete assemblages are characteristically different at the two sites in the extreme northern (Ghusighata) and southern (Gangasagar) portions of the Biosphere Reserve. Levels of heavy metals in polychaete body tissues also reveal interspecific and regional variations. The predominant polychaete fauna exhibited a distinct and unique assemblage of two types: (i) Mastobranchus indicus – Dendronereides heteropoda in the sewage-fed substratum at Ghusighata and (ii) Lumbrinereis notocirrata – Ganganereis sootai – Glycera tesselata at Gangasagar at the mouth of the Hugli estuary where chronic anthropogenic stress and contamination with agricultural and industrial effluents occur. The faunistic composition of polychaetes and their potential for the accumulation of heavy metals from the ambient medium are distinctly different. The study demonstrates that textural composition of the sediments, together with hydrodynamic and geotechnical properties, seem to have the greatest control to quantify the differences of the polychaete community in the two study stations. An in-depth comparative study of polychaete community structure at multiple spatial scales is strongly recommended for future environmental impact assessment in this fragile environment.     

Genome size variations in diploid African Coffea species

Flow cytometry was conducted to evaluate genome size diversity among African diploid species of the Coffea genus. The study included 15 species and six new taxa from Congolese and Cameroonian forest regions which have yet to be botanically characterized. Between-population differences were also recorded in some cases. These evaluations using an internal standard were highly correlated with previous results obtained with an external standard, but differences of up to 18 % existed for some species, involving stoichiometric errors. Consequently, genome size variation between species and within species are discussed as true genome size differences or stoichiometric errors. Environmental and phenotypic correlations with genome size are also discussed.     

Scanning electron microscopy of taxonomic diagnostic criteria of the freshwater sponge,Heteromeyenia tubisperma (Potts, 1881) (Porifera : Spongillidae)

Taxonomic diagnostic criteria of the spongillid freshwater sponge, Heteromeyenia tubisperma (Potts, 1881) were examined using scanning electron microscopy. The species is characterized by a gemmule which bears an unusually long, prominent porous tube. The application of SEM to the systematic studies of the freshwater sponges provides diagnostic capabilities not available with the light microscope. It is desirable that a key, coupled with a reference atlas of scanning electron micrographs illustrating taxonomic diagnostic criteria of freshwater sponge species, particularly utilizing type specimens, be developed.     

Impacts of past glaciation events on contemporary fish assemblages of the Ohio River basin

Aim We evaluated variation in fish assemblages on the basis of taxonomic composition and functional groups based on Pleistocene glacial boundaries in the Ohio River basin. We tested for the influence of habitat and hydrology on fish assemblage variation. Location Ohio River basin of North America, including the states of Ohio, Indiana and Illinois. Methods Fish collection sites were identified as Wisconsinan, pre‐Wisconsinan or unglaciated regions. Multivariate analyses, multi‐response permutation procedures, discriminant analysis and indicator species analyses were used to test whether taxonomic and functional assemblages were distinct among regions with varying glacial histories. Principal components analysis was used to identify habitat and water quality, as well as hydrological gradients that could be discerned by glacial region. Results We identified significant differences in both taxonomic and functional fish assemblage structure and habitat variation among regions that had different glaciation histories. The largest differences in taxonomic and functionally based fish communities were for unglaciated and pre‐Wisconsinan regions, while unglaciated and Wisconsinan regions were most similar. We correctly classified study regions in 71% and 60% of sites using taxonomy and functional analyses, respectively. Wisconsinan sites were characterized by Cyprinidae and Catostomidae assemblages with high abundances of tolerant fishes that tended to occur in habitats with reduced current velocity. Pre‐Wisconsinan sites were characterized by Cyprinidae, Catostomidae, Centrarchidae and Percidae families with increased abundances of intolerant fishes that tended to occur in habitats with coarser substrates and increased water velocity in streams of varying size. Unglaciated sites were characterized by Cyprinidae and Percidae families and were not closely associated with any habitat‐based functional group. Habitat in the unglaciated and pre‐Wisconsinan sites was significantly different from that in the Wisconsinan sites, which were characterized by increased channel structure and reduced stream size. Main conclusions Pleistocene glaciation events formed a lasting template of predictable regional differences in stream habitat and in the corresponding taxonomic and functional fish assemblage structures. While many factors impact the distribution of fishes, these results suggest that historical influences such as glaciation may be used to further explain the underlying mechanisms of spatial variation in fish assemblages.     

Ordovician eunicid polychaetes of Estonia and surrounding areas: review of their distribution and diversification

Scolecodonts, the jaws of polychaete worms, are common and diverse palynomorphs in the Ordovician rocks of Estonia and surrounding areas. Some 120 apparatus-based species representing about 40 genera have been recorded thus far. Relatively long stratigraphical ranges of the majority of species reflect a low rate of evolution of jawed polychaetes. However, some individual species, as well as structural changes in the assemblages, appear to be useful for stratigraphical purposes. Environmental events like those in the middle Caradoc and late Ashgill had some impact on polychaete faunas, but less than on several other groups. In order to study the spatial distribution of eunicids, faunas of particular intervals of the Ordovician were investigated. Quantitative analysis revealed that polychaete assemblages with a very consistent qualitative and quantitative composition were widespread over long distances within the belts of similar facies conditions in the Baltoscandian Palaeobasin. On the other hand, it appears that species of Ordovician jawed polychaetes were strongly influenced by particular facies, and accordingly well differentiated along the palaeobasin gradient. The decrease in diversity and abundance towards the deeper-water part of the palaeobasin indicates that the majority of Ordovician eunicids preferred relatively shallow-water conditions. The increase in differentiation of environments is accompanied by an increase in differentiation of polychaete assemblages.     

Effect of environmental factors on the spatial distribution of the epifauna of the alga Halopteris scoparia in Algeciras Bay, Southern Spain

The physical characteristics and environmental versatility of the alga Halopteris scoparia (Phaeophyta, Sphacelariales) make it a suitable substrate for development of epiphytic communities. Spatial variation of the epifauna on this alga in Algeciras Bay (southern Spain) in response to different environmental conditions is investigated. There is a clear difference in community composition between external and internal areas of the bay, with an important group of species present in only one of the areas (e.g., in outer areas crustaceans such as Tanais dulongii or Amphilochus neapolitanus or the polychaete Nicolea venustula; and species from inner areas such as the crustacean Jassa marmorata and the mollusc Alvania montagui or Rissoa similis). The external zone shows high hydrodynamics and low sedimentation rates, whereas in the internal one, there is a high sedimentation rate (as a result of two main rivers, a less strong current regime, and the presence of urban and industrial wastes). The conditions prevailing in the internal zone of the bay are unfavourable for most of the epifaunal species in the external bay areas.     

The Importance of Vertical and Horizontal Dimensions of the Sediment Matrix in Structuring Nematodes Across Spatial Scales

Intensive surveys have been conducted to unravel spatial patterns of benthic infauna communities. Although it has been recognized that benthic organisms are spatially structured along the horizontal and vertical dimensions of the sediment, little is known on how these two dimensions interact with each other. In this study we investigated the interdependence between the vertical and horizontal dimensions in structuring marine nematodes assemblages. We tested whether the similarity in nematode species composition along the horizontal dimension was dependent on the vertical layer of the sediment. To test this hypothesis, three-cm interval sediment samples (15 cm depth) were taken independently from two bedforms in three estuaries. Results indicated that assemblages living in the top layers are more abundant, species rich and less variable, in terms of species presence/absence and relative abundances, than assemblages living in the deeper layers. Results showed that redox potential explained the greatest amount (12%) of variability in species composition, more than depth or particle size. The fauna inhabiting the more oxygenated layers were more homogeneous across the horizontal scales than those from the reduced layers. In contrast to previous studies, which suggested that reduced layers are characterized by a specific set of tolerant species, the present study showed that species assemblages in the deeper layers are more causal (characterized mainly by vagrant species). The proposed mechanism is that at the superficial oxygenated layers, species have higher chances of being resuspended and displaced over longer distances by passive transport, while at the deeper anoxic layers they are restricted to active dispersal from the above and nearby sediments. Such restriction in the dispersal potential together with the unfavorable environmental conditions leads to randomness in the presence of species resulting in the high variability between assemblages along the horizontal dimension.     

Calcareous forest seepages acting as biodiversity hotspots and refugia for woodland snail faunas

Land-snail species richness has repeatedly been found to increase with the increasing site calcium content and humidity. These two factors, reported as the main drivers of land-snail assemblage diversity, are also among the main habitat characteristics of calcareous seepages. Here we explore local species richness and compositional variation of forest spring-fed patches (i.e. seepages), to test the hypothesis that these habitats might act as biodiversity hotspots and refugia of regional snail faunas. In contrast to treeless spring fens, only little is known about land snail faunas inhabiting forest seepages. Studying 25 isolated calcareous forest seepages, evenly distributed across the White Carpathians Protected Landscape Area (SE Czech Republic), we found that these sites, albeit spatially very limited, can harbour up to 66% of the shelled land-snail species known to occur in this well-explored protected area (in total 83 species). By comparing land snail assemblages of the studied seepages with those occurring in the woodland surroundings of each site as well as those previously sampled in 28 preserved forest sites within the study area, we found the seepages to be among the most species rich sites. Although the numbers of species did not statistically differ among these three systems, we found highly significant differences in species composition. Seepage faunas were composed of many species significantly associated with spring sites, in contrast to the assemblages of both surrounding and preserved forest sites. Our results highly support the hypothesis that calcareous forest seepages might serve as refugia and biodiversity hotspots of regional land snail faunas. Protection of these unique habitats challenges both conservation plans and forest management guidelines as they might act as sources for the recolonization and restoration of forest snail assemblages particularly in areas impoverished by harvesting and clearcutting.     

Spatial and temporal distributions of epiphytic diatoms growing on Thalassia testudinum Banks ex König: relationships to water quality

The spatial and temporal distributions of the epiphytic diatom flora on Thalassia testudinum was described within the Florida Bay estuary and at one Atlantic site east of the Florida Keys over a 1-year period. Species of the genus Mastogloia dominated the epiphytic diatom flora (82 out of 332 total species). Nonmetric Multidimensional Scaling (NMDS) and Analysis of Similarity (ANOSIM) revealed four distinct spatial assemblages and two temporal assemblages. Eastern and western Florida Bay assemblages were identified within the estuary. The eastern diatom assemblage was characterized by high relative abundances of Brachysira aponina and Nitzschia liebetruthii, while the western assemblage was characterized by the abundance of Reimerothrix floridensis, particularly during summer. Two diverse and distinct marine assemblages, one located in the Gulf of Mexico along the western edge of Florida Bay and the other behind the Florida reef tract in the Atlantic Ocean, were also identified. Analysis of the spatial distribution of diatoms and water quality characteristics within Florida Bay suggest that these assemblages may be structured by salinity and nutrient availability, particularly P. The Gulf of Mexico and the western Florida Bay assemblages were associated with higher water column salinities and TP concentrations and lower DIN concentrations and TN:TP ratios relative to the eastern Florida Bay assemblage. The temporal variation in diatom assemblages was associated with water temperature, though temporal indicator species were few relative to the number of spatial indicators. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.