Relative Importance of Coral Cover,Habitat Complexity and Diversity in Determining the Structure of Reef Fish Communities

The structure of coral reef habitat has a pronounced influence on the diversity, composition and abundance of reef-associated fishes. However, the particular features of the habitat that are most critical are not always known. Coral habitats can vary in many characteristics, notably live coral cover, topographic complexity and coral diversity, but the relative effects of these habitat characteristics are often not distinguished. Here, we investigate the strength of the relationships between these habitat features and local fish diversity, abundance and community structure in the lagoon of Lizard Island, Great Barrier Reef. In a spatial comparison using sixty-six 2m² quadrats, fish species richness, total abundance and community structure were examined in relation to a wide range of habitat variables, including topographic complexity, habitat diversity, coral diversity, coral species richness, hard coral cover, branching coral cover and the cover of corymbose corals. Fish species richness and total abundance were strongly associated with coral species richness and cover, but only weakly associated with topographic complexity. Regression tree analysis showed that coral species richness accounted for most of the variation in fish species richness (63.6%), while hard coral cover explained more variation in total fish abundance (17.4%), than any other variable. In contrast, topographic complexity accounted for little spatial variation in reef fish assemblages. In degrading coral reef environments, the potential effects of loss of coral cover and topographic complexity are often emphasized, but these findings suggest that reduced coral biodiversity may ultimately have an equal, or greater, impact on reef-associated fish communities.     

Long-term effect of coral transplantation: restoration goals and the choice of species

The transplantation is an important method for the restoration of degraded ecosystem. However, it is unclear how the choice of species and transplantation mode affects the community dynamics during recovery from a disaster, particularly for long-lived organisms such as corals. To address this issue, we study a population dynamic model of multiple species in multiple habitats connected by larval dispersal. We first consider two species showing the trade-off relationship between growth rate and mortality and examine three restoration goals to evaluate the effectiveness of transplantation: (1) total coverage; (2) species diversity; (3) spatial heterogeneity of species composition. To promote the rapid development of total coverage, the transplantation of fast-growing species should be adopted. To maintain a high level of regional species diversity, the transplantation of slow-growing species or short-dispersal species is effective. Next, we suppose four genera of corals - Acropora, Pocillopora, Porites, and Favites - as an example of coral community in Okinawa where Pocillopora is facing to local extinction. In addition to three indexes; (4) recovery of locally endangered species is evaluated as a restoration goal. Results show that to promote the recovery of Pocillopora, the transplantation of the same species is clearly the most effective choice. In contrast, the transplantations of Acropora and Porites led to undesirable results. In summary, these results indicate that both the restoration goal and the transplanted species must be carefully selected before conducting transplantation operations.     

Reef Fishes in Biodiversity Hotspots Are at Greatest Risk from Loss of Coral Species

Coral reef ecosystems are under a variety of threats from global change and anthropogenic disturbances that are reducing the number and type of coral species on reefs. Coral reefs support upwards of one third of all marine species of fish, so the loss of coral habitat may have substantial consequences to local fish diversity. We posit that the effects of habitat degradation will be most severe in coral regions with highest biodiversity of fishes due to greater specialization by fishes for particular coral habitats. Our novel approach to this important but untested hypothesis was to conduct the same field experiment at three geographic locations across the Indo-Pacific biodiversity gradient (Papua New Guinea; Great Barrier Reef, Australia; French Polynesia). Specifically, we experimentally explored whether the response of local fish communities to identical changes in diversity of habitat-providing corals was independent of the size of the regional species pool of fishes. We found that the proportional reduction (sensitivity) in fish biodiversity to loss of coral diversity was greater for regions with larger background species pools, reflecting variation in the degree of habitat specialization of fishes across the Indo-Pacific diversity gradient. This result implies that habitat-associated fish in diversity hotspots are at greater risk of local extinction to a given loss of habitat diversity compared to regions with lower species richness. This mechanism, related to the positive relationship between habitat specialization and regional biodiversity, and the elevated extinction risk this poses for biodiversity hotspots, may apply to species in other types of ecosystems.     

A high local species richness and biodiversity within high-latitude calcareous aggregates of tube-building polychaetes

In general, biodiversity and species richness follow the latitudinal diversity gradient and decrease from the tropics towards the poles. Exceptions have however been recorded, as for deep coldwater coral reefs at high latitudes, which comprise biodiversity hotspots. Here we assess and characterise the high-latitude (69°N) species richness and diversity of a local shallow-water fauna associated with small calcareous aggregations of a serpulid polychaete. A dense and very species rich fauna was recorded within aggregations of Filograna implexa Berkeley, 1828. Totally 4663 individuals belonging to 99 species (61 solitary, 38 colonial) were recorded in a total aggregation volume of only 4.4 l covering an area less than 0.05 m² of a wreck situated in a tidal stream in North Norway. The number of species within each aggregation was positively related to its size, indicating that the high species diversity may be due to structural heterogeneity, which increase with aggregation size and probably creates new microhabitats and protect against predation. We present a species list including abundance and biomass, pin-point common species and describe a method for sampling such faunas associated with calcareous structures.     

Acanthaster planci outbreak: decline in coral health, coral size structure modification and consequences for obligate decapod assemblages

Although benthic motile invertebrate communities encompass the vast majority of coral reef diversity, their response to habitat modification has been poorly studied. A variety of benthic species, particularly decapods, provide benefits to their coral host enabling them to cope with environmental stressors, and as a result benefit the overall diversity of coral-associated species. However, little is known about how invertebrate assemblages associated with corals will be affected by global perturbations, (either directly or indirectly via their coral host) or their consequences for ecosystem resilience. Analysis of a ten year dataset reveals that the greatest perturbation at Moorea over this time was an outbreak of the corallivorous sea star Acanthaster planci from 2006 to 2009 impacting habitat health, availability and size structure of Pocillopora spp. populations and highlights a positive relationship between coral head size and survival. We then present the results of a mensurative study in 2009 conducted at the end of the perturbation (A. planci outbreak) describing how coral-decapod communities change with percent coral mortality for a selected coral species, Pocillopora eydouxi. The loss of coral tissue as a consequence of A. planci consumption led to an increase in rarefied total species diversity, but caused drastic modifications in community composition driven by a shift from coral obligate to non-obligate decapod species. Our study highlights that larger corals left with live tissue in 2009, formed a restricted habitat where coral obligate decapods, including mutualists, could subsist. We conclude that the size structure of Pocillopora populations at the time of an A. planci outbreak may greatly condition the magnitude of coral mortality as well as the persistence of local populations of obligate decapods.     

涠洲岛造礁石珊瑚群落变化特征及其环境影响因子

以涠洲岛造礁石珊瑚群落为研究对象,分析其群落物种组成、多样性、Raunkiaer频度和种间Spearman轶相关,探讨群落组成与水环境因子的相关性,并结合近10年来涠洲岛造礁石珊瑚变化情况,找出涠洲岛造礁石珊瑚群落的主导影响因素。结果表明：（1）近10年来涠洲岛造礁石珊瑚覆盖率显著降低,珊瑚形态组成趋于块状化,尽管珊瑚群落多样性较高,但群落分布较松散,群落结构较不稳定,部分优势种种间竞争较激烈。（2）悬浮物含量是影响石珊瑚群落最显著的环境因子。石珊瑚优势种群在不同水深中分布差异显著,泥沙覆盖率、营养盐对不同石珊瑚种群影响差异较大,大型海藻覆盖率在局部区域对优势珊瑚形成较强的竞争关系。（3）营养盐和泥沙沉积物的增加与涠洲岛近海养殖业及生活排污、海岸工程及海岸侵蚀密切相关。     

Diversity and spatial pattern of coral communities in the Red Sea upper twilight zone

Summary This is the first study based on numerical analysis of the abundance of 11 scleractinian corals of depths at between 100–210 m in the Red Sea twilight zone. Two distinct coral communities were found: a Leptoseris fragilis community at a depth of 100–130 m (zone 1) and a Dendrophillia horsti community below 130 m (zone 2, 3). Population densities and coral coverage are very low; distribution of individuals is highly clumped. Highest observed densities on 100 m² were 2720 individuals for L. fraglis, 2720 for D. horsti and 2260 for Javania insignis. Calculated coverage rates were maximally 3.6% (L. fragilis), 0.08% (D. horsti) and 0.11% (J. insignis). L. fragilis, the only symbiont bearing coral, was very abundant. It has an unusual depth range for a photosynthesising coral. Coral density is only weakly correlated with hard bottom coverage. Species diversity with an average of 8 species is highest at 120–170 m and decreases in shallower and deeper water. The study depth range is a transient zone for coral distribution. It contains the upper distribution limits of a few deep sea corals and the lower ones of several shallower water species. Ahermatypic corals, collected at 160–170 m depth, were transplanted from their original depth to 159, 118, 70 and 40 m; after one year most species survived transplantation far beyond their upper distributional limits. The symbiotic L. fragilis, collected at 120 m, survived transplantation to deep water (159 m) as well as shallow zones (90, 70 and 40 m). The study demonstrates the feasibility of line-transect methods for coral community studies with a submersible.     

The role of in situ coral nurseries in supporting mobile invertebrate epifauna

Coral nurseries are commonly employed to generate coral material for reef restoration projects, but observations of epifaunal organisms utilising the nurseries for food and shelter indicate that they can also provide important functions beyond that of coral propagation. To examine the level of biodiversity that can be supported by coral nurseries, and investigate if epifaunal communities were influenced by the presence of live coral tissue, we compared the abundance, diversity and community composition of mobile invertebrate epifauna associated with live and dead fragments of three coral species (Pocillopora acuta, Echinopora lamellosa, Platygyra sinensis) that were reared in an in situ nursery. A total of 418 mobile invertebrates spanning 63 taxa were recorded from 22 coral colonies. The three coral species hosted significantly different epifaunal communities, most likely a consequence of the difference in growth forms of the coral hosts. Significant differences in epifaunal communities were only observed between live and dead colonies of P. acuta, indicating that resource provisioning in this species is particularly influenced by the presence of live tissue. Our findings showed that coral nurseries can support a range of mobile invertebrates and function as tools to conserve threatened mobile invertebrates. This ecological function is under-studied and should be assessed in restoration programs for the conservation of corals and associated fauna.     

Hidden structural heterogeneity enhances marine hotspots’ biodiversity

Studies in terrestrial and shallow-water ecosystems have unravelled the key role of interspecific interactions in enhancing biodiversity, but important knowledge gaps persist for the deep sea. Cold-water coral reefs are hotspots of biodiversity, but the role of interspecific interactions and “habitat cascades” (i.e. positive effects on focal organisms mediated by biogenic habitat formation) in shaping their biodiversity is unknown. Associations between macrofaunal hosts and epifauna were examined in 47 stations at the Mingulay Reef Complex (northeast Atlantic). In total, 101 (group level) and 340 (species level) unique types of facultative associations formed by 43 hosts and 39 epifaunal species were found. Molluscs and empty polychaete tubes had higher values for the type and number of host-epifaunal associations, the Shannon–Wiener (H) and Margalef (d) indices of the epifauna than the rest of the taxonomic groups (p < 0.05). Hosts’ body size, orientation, surface smoothness, and growth form explained a significant amount of variability (32.96%) in epifauna community composition. Epifaunal species richness (S), H and d were 27.4 (± 2.2%), 56.2 (± 2.8%) and 39.9 (± 2.3%) of the respective values for the total sessile communities living on coral framework. This is intriguing as coral framework is orders of magnitude larger than the size of macrofaunal hosts. It is suggested that bivalves, tunicates and empty polychaete tubes increase habitat heterogeneity and enhance biodiversity through “habitat cascades”, in a similar way that epiphytes do in tropical rainforests. Most macrofaunal habitat suppliers in the studied cold-water coral reef are calcified species and likely susceptible to ocean acidification. This indicates that the impacts of climate change on the total biodiversity, structure and health of cold-water coral reefs may potentially be more severe than previously thought.

     

How do different aspects of biodiversity change through time? A case study on an Australian bird community

The study of ecological communities through time can reveal fundamental ecological processes and is key to understanding how natural and human pressures will affect biodiversity. Most studies of ecological communities through time consider only one or a few summary measures (e.g. species richness, total abundance), which might neglect important aspects of community structure or function. We studied temporal variation in several measures of species diversity, size diversity, and species composition in an intensively sampled bird community to determine whether different biodiversity measures change synchronously. We used a novel function regression model, which supports the study of diversity measures that are distributions (e.g. species abundance distributions) alongside measures that are scalar values (e.g. species richness). Most diversity measures changed predictably within years, but inter‐annual changes in size diversity and species composition were not reflected in species diversity. Within and among years, there was considerable variation in distributional measures that was not captured in scalar measures. Predictable variation within years probably was related to seasonal variation in weather patterns or food availability, but variation in size diversity among years probably resulted from stochastic changes in species composition. These results suggest that species and size diversity may be decoupled, and that inferences on scalar diversity measures might not reflect fundamental changes to community structure or function. Our method supports the inclusion of size‐based measures and distributional measures in ecological analyses, and broader uptake of our approach is likely to provide new insight into the processes structuring ecological communities, and inform the links between structure and function in ecological communities.     

Functional diversity is positively associated with biomass for lake diatoms

1. Recent work has emphasised the benefit of using functional measures when relating biodiversity to ecosystem functioning. In this study, we investigated the extent to which functional and taxonomic diversity might be related to summed biovolume in community assemblages of 212 species of diatoms collected from 65 temperate lakes in western and central Quebec, Canada. 2. We quantified functional diversity as both the total path‐length of a functional dendrogram (FD) and the variance in species traits (TV) for a given community. Selected traits included both size and responses to a set of environmental variables known to be influential for diatom communities. 3. Species richness, as well as both FD and TV, was positively associated with total diatom biovolume at the level of the entire diatom community, suggesting that diversity in response types (particularly to total phosphorus and pH) is important for diatom community production. 4. Although functional measures of diversity did not provide enhanced explanatory power over species richness, we argue that an exploration of functional traits potentially allows greater insight into the mechanisms underlying biodiversity–ecosystem functioning relations, indicating which traits might be most influential in driving community biomass production.     

Analysis on variation trend of coral reef in Xisha

Xisha Islands, located in the northern part of South China Sea, consist of more than 20 islands and atolls. The coral reef of Xisha Islands belongs to the typical ocean distribution of world’s coral reefs, its ecosystem is the most typical in our country and hermatypic coral species are about three-quarters of the total coral species in China. It is addressed with the oldest coral reef community which of the most original and valuable in China. The previous research shows that the islands studded in South China Sea such as Xisha Islands have important influence on the formation of coral reefs along the mainland coast by multiplying and migrating from south to the north. It is supplementary sources of coastal coral larvae in Hainan and Guangdong. Therefore, carrying out the monitoring of coral reef community ecosystem is of great significance to the ecological protection. By the Manta tow and the Line Intercept Transect method, five stations (Xisha Yong xing dao, Shi dao, Xisha zhou, Zhao Shu dao and Bei dao) on Xisha ecological monitoring area were monitored continually from 2005 to 2009. We compared the index changes of Hermatypic coral’s species, coverage and recruitment, and combining with Condition Index, Succession Index, and the variation trend of hard coral in Xisha were analyzed.
The results show that, from 2005 to 2009, the coverage of living hermatypic corals in ecological monitoring area is sharply reduced from 68.19% to 7.93%, while the dead coral coverage is sharply increased from 4.70% to 72.90%. Coral recruitment is reduced from 1.18 ind/100 m² to 0.07 ind/100 m², hermatypic coral species decreased from 87 to 35. In 2005, the health of coral reefs was very good, and the Condition Index was 1.097. However, the Condition Index cut down to a very low degree in 2009. It was only ?0.880. The Succession Index belonged to “very low degree” from 2005 to 2009, and the numerical value was gradually reduce from ?0.984 to ?1.876.
As a whole, hermatypic corals are serious degrade regionally and caused great change to the coral structure and biodiversity, this will lead to a continuous degradation of coral reefs.     

Coral reefs promote the evolution of morphological diversity and ecological novelty in labrid fishes

Although coral reefs are renowned biodiversity hotspots it is not known whether they also promote the evolution of exceptional ecomorphological diversity. We investigated this question by analysing a large functional morphological dataset of trophic characters within Labridae, a highly diverse group of fishes. Using an analysis that accounts for species relationships, the time available for diversification and model uncertainty we show that coral reef species have evolved functional morphological diversity twice as fast as non-reef species. In addition, coral reef species occupy 68.6% more trophic morphospace than non-reef species. Our results suggest that coral reef habitats promote the evolution of both trophic novelty and morphological diversity within fishes. Thus, the preservation of coral reefs is necessary, not only to safeguard current biological diversity but also to conserve the underlying mechanisms that can produce functional diversity in future.     

Comparison of coral diversity between big and small atolls: a case study of Yongle atoll and Lingyang reef,Xisha Islands,central of South China Sea

The South China Sea (SCS) includes large areas of extensive coral reef development but its reefs are still poorly known. Yongle atoll is the biggest typical atoll in the Xisha Islands, central of SCS. Lingyang Reef is an isolated small atoll within the whole big Yongle atoll. A total of 144 and 119 coral species were recorded at big Yongle atoll and small Lingyang Reef, respectively. The real coral richness might be higher because species accumulation curve did not saturate. The coral diversity pattern was similar between big Yongle atoll and small Lingyang Reef. Coral communities fell into three clusters, consistent with their habitats on reef slope, reef flat and lagoon slope. The highest coral diversity was observed on reef slopes and the lowest coral diversity was found on lagoon slope. Genera richness was a better proxy for representing coral species diversity on both the big and small atoll but percent live coral cover was not a robust proxy on the small atoll, which only explained 24% of species diversity. This study demonstrated high coral diversity with consistent pattern along habitat types, as has been shown from many other reefs. While far from exhaustive, the study allows first glimpses on how much biodiversity is contained on SCS coral reefs, and hopes to give an impetus to their conservation. The study also suggests that simplified surveys at a small scale and the use of genera richness as an effective proxy for overall diversity can indeed provide important information to rapidly monitor and evaluate the coral diversity in remote locations.     

鄂尔多斯高原植物群落多样性时空变化特点

作者利用1999年和2000年野外植物群落调查资料,结合李博(1990)的植物群落调查结果,分析了鄂尔多斯高原植物群落多样性的时空变化特点。鄂尔多斯高原主要植物群落类型有23类,不同植被类型的群落多样性表现出一定的差异性,其中丰富度指数的差异不显著,而Simpson指数和Shannon-Wiener指数及群落盖度的差异明显。中东部典型草原表现为高多样性高盖度;西鄂尔多斯荒漠草原和草原化荒漠物种多样性较高,但盖度较低;毛乌素沙地植物群落物种多样性低,但盖度较高。从1986年到2000年,该地区典型草原群落、荒漠草原和沙地植被的群落多样性指数都有下降趋势;典型草原和草原化荒漠的群落盖度有所增加,荒漠草原有所下降。以上结果表明,沙地植被和草原化荒漠生物多样性已经得到了一定的保护,但还有待加强,而荒漠草原的保护亟待引起重视。     

The Diversity of Coral Reefs: What Are We Missing?

Tropical reefs shelter one quarter to one third of all marine species but one third of the coral species that construct reefs are now at risk of extinction. Because traditional methods for assessing reef diversity are extremely time consuming, taxonomic expertise for many groups is lacking, and marine organisms are thought to be less vulnerable to extinction, most discussions of reef conservation focus on maintenance of ecosystem services rather than biodiversity loss. In this study involving the three major oceans with reef growth, we provide new biodiversity estimates based on quantitative sampling and DNA barcoding. We focus on crustaceans, which are the second most diverse group of marine metazoans. We show exceptionally high numbers of crustacean species associated with coral reefs relative to sampling effort (525 species from a combined, globally distributed sample area of 6.3 m(2)). The high prevalence of rare species (38% encountered only once), the low level of spatial overlap (81% found in only one locality) and the biogeographic patterns of diversity detected (Indo-West Pacific>Central Pacific>Caribbean) are consistent with results from traditional survey methods, making this approach a reliable and efficient method for assessing and monitoring biodiversity. The finding of such large numbers of species in a small total area suggests that coral reef diversity is seriously under-detected using traditional survey methods, and by implication, underestimated.     

Reduced Diversity and High Sponge Abundance on a Sedimented Indo-Pacific Reef System: Implications for Future Changes in Environmental Quality

Although coral reef health across the globe is declining as a result of anthropogenic impacts, relatively little is known of how environmental variability influences reef organisms other than corals and fish. Sponges are an important component of coral reef fauna that perform many important functional roles and changes in their abundance and diversity as a result of environmental change has the potential to affect overall reef ecosystem functioning. In this study, we examined patterns of sponge biodiversity and abundance across a range of environments to assess the potential key drivers of differences in benthic community structure. We found that sponge assemblages were significantly different across the study sites, but were dominated by one species Lamellodysidea herbacea (42% of all sponges patches recorded) and that the differential rate of sediment deposition was the most important variable driving differences in abundance patterns. Lamellodysidea herbacea abundance was positively associated with sedimentation rates, while total sponge abundance excluding Lamellodysidea herbacea was negatively associated with rates of sedimentation. Overall variation in sponge assemblage composition was correlated with a number of variables although each variable explained only a small amount of the overall variation. Although sponge abundance remained similar across environments, diversity was negatively affected by sedimentation, with the most sedimented sites being dominated by a single sponge species. Our study shows how some sponge species are able to tolerate high levels of sediment and that any transition of coral reefs to more sedimented states may result in a shift to a low diversity sponge dominated system, which is likely to have subsequent effects on ecosystem functioning.     

Lack of Congruence in Species Diversity Indices and Community Structures of Planktonic Groups Based on Local Environmental Factors

The importance of analyzing the determinants of biodiversity and community composition by using multiple trophic levels is well recognized; however, relevant data are lacking. In the present study, we investigated variations in species diversity indices and community structures of the plankton taxonomic groups–zooplankton, rotifers, ciliates, and phytoplankton–under a range of local environmental factors in pond ecosystems. For each planktonic group, we estimated the species diversity index by using linear models and analyzed the community structure by using canonical correspondence analysis. We showed that the species diversity indices and community structures varied among the planktonic groups and according to local environmental factors. The observed lack of congruence among the planktonic groups may have been caused by niche competition between groups with similar trophic guilds or by weak trophic interactions. Our findings highlight the difficulty of predicting total biodiversity within a system, based upon a single taxonomic group. Thus, to conserve the biodiversity of an ecosystem, it is crucial to consider variations in species diversity indices and community structures of different taxonomic groups, under a range of local conditions.