Endocytosis,Signaling, and Beyond

The endocytic network comprises a vast and intricate system of membrane-delimited cell entry and cargo sorting routes running between biochemically and functionally distinct intracellular compartments. The endocytic network caters to the organization and redistribution of diverse subcellular components, and mediates appropriate shuttling and processing of materials acquired from neighboring cells or the extracellular milieu. Such trafficking logistics, despite their importance, represent only one facet of endocytic function. The endocytic network also plays a key role in organizing, mediating, and regulating cellular signal transduction events. Conversely, cellular signaling processes tightly control the endocytic pathway at different steps. The present article provides a perspective on the intimate relationships that exist between particular endocytic and cellular signaling processes in mammalian cells, within the context of understanding the impact of this nexus on integrated physiology.Molecular mechanisms governing the remarkable diversity of endocytic routes and trafficking steps are described elsewhere in the literature (see Bissig and Gruenberg 2013; Henne et al. 2013; Burd and Cullen 2014; Gautreau et al. 2014; Kirchhausen et al. 2014; Mayor et al. 2014; Merrifield and Kaksonen 2014; Piper et al. 2014). Moreover, these have been the focus of many studies in the last 30 years, and the topic has been covered by many excellent reviews, making it unnecessary for us to dwell on this aspect any further here (see, for instance, Howes et al. 2010; McMahon and Boucrot 2011; Sandvig et al. 2011; Parton and del Pozo 2013). Herein, we will instead concentrate our attention on how cellular regulatory mechanisms control endocytosis, as well as on how endocytic events impinge on cell functions. Emphasis will be placed, although not exclusively, on studies that analyze cellular networks using holistic approaches and in vivo analysis. Our aim is to give the reader a flavor of the deep embedding of endocytic processes within cellular programs, a concept we refer to as the endocytic matrix (Scita and Di Fiore 2010).     

Evidence that levamisole, pyrantel, morantel, amidantel, deacylated amidantel and hycanthone may act on acetylcholine receptors of central neurones of Helix aspersa

1. Intracellular recordings were made from identified neurones in the suboesophageal ganglionic mass of the snail, Helix aspersa. Neurones were classified as either "H" cells, inhibited by acetylcholine or "D" cells, excited by acetylcholine. 2. The actions of levamisole, morantel, pyrantel, amidantel, deacylated amidantel and hycanthone were investigated on these neurones and compared to that of acetylcholine. 3. Levamisole was 10.85 +/- 0.56 times less active than acetylcholine on "H" cells but more than 100 times less active on "D" cells. On "H" cells levamisole had a secondary gradual depolarizing effect which was irreversible and resulted in the loss of cell activity. 4. Morantel and pyrantel were 1.12 +/- 0.13 and 2.56 +/- 0.26 times respectively less active than acetylcholine on "D" cells and 5.16 +/- 0.6 and 3.53 +/- 0.63 times respectively less active than acetylcholine on "H" cells. 5. Amidantel was more than 100 times less active than acetylcholine on both "D" and "H" cells while its deacylated derivative was 26.0 +/- 1.0 and 76.0 +/- 3.25 times respectively less active than acetylcholine on "D" and "H" cells. 6. Hycanthone possessed weak inhibitory effects on "H" cells but also appeared to reduce the duration of acetylcholine inhibitory responses when applied immediately after the acetylcholine response had reached its maximum.     

Fungi,leaves, and the theory of island biogeography

Species dynamics of fungi (filamentous fungi and yeasts) on apple leaves were studied within the framework of the theory of island biogeography by following immigration and extinction patterns on individual apple leaf islands over time. Total fungi were censused on unmanipulated leaves collected throughout two seasons; filamentous fungi only were monitored additionally for several weeks in one season on newly created, axenic, model (seedling) islands introduced to the orchard, and on surface-sterilized, preexisting leaves. Analyses based on both the natural and the surface-sterilized systems showed that an equilibrium in species number was reached and turnover in species composition occurred in both. Immigration and extinction events were strongly related to number of species present on each island. The balance between immigration and extinction implies that species number on leaves and real (oceanic) islands is determined by a common mechanism, and emphasizes the need to regard leaf microbial communities as dynamic.     

The Biology of Arctic Charr, Salvelinus Alpinus, of Gander Lake, A Large, Deep, Oligotrophic Lake in Newfoundland, Canada

Resident Arctic charr, Salvelinus alpinus, are widespread throughout the island of Newfoundland. This study examines aspects of the biology and spatial and temporal distributions of the charr of Gander Lake, the third largest in Newfoundland (surface area = 11320ha, maximum depth = 288m, mean depth = 105.4m). The deepest part of the lake is approximately 258m below sea level. The lake is well oxygenated from the surface to the bottom during all seasons. Sampling was conducted with Lundgren multiple-mesh experimental gillnets and baited hooks. There appears to be two morphs present, based on colour (dark and pale) and certain meristic characteristics. Dark charr were caught mainly in benthic nets (at depths from 1 to 100m inclusive) with only a few pelagic captures. Pale charr were caught only in benthic nets at depths between 20 and 100m inclusive. The maximum depth sampled was 196m, but there was no catch. There was a tendency for dark charr to be found in deeper, cooler water as the upper water column and inshore areas warmed during summer. There was no apparent trend in size of charr with depth sampled. Dark and pale charr both fed on benthic macroinvertebrates; sticklebacks were consumed only by dark charr and the importance of this prey item increased with size of predator. Zooplankton and surface food were not utilised by Gander Lake charr. Results of the study are compared with findings reported for other water bodies in Newfoundland and Labrador, North America, and Europe, particularly Loch Ness which has similarities in morphometry and trophic status to Gander Lake.     

Erythromycin, lincosamides, peptidyl-tRNA dissociation, and ribosome editing

Inaccurate protein synthesis produces unstable -galactosidase, whose activity is rapidly lost at high temperature. Erythromycin, lincomycin, clindamycin, and celesticetin were shown to counteract the error-inducing effects of streptomycin on -galactosidase synthesized in the antibiotic-hypersensitive Escherichia coli strain DB-11 Met ^–. Newly synthesized -galactosidase was more easily inactivated by high temperatures when synthesized by bacteria partially starved for arginine, threonine, or methionine. Simultaneous treatment with erythromycin or linocomycin yielded -galactosidase that was inactivated by high temperatures less easily than during starvation alone, an effect attributed to stimulation of ribosome editing. When synthesized in the presence of canavanine, -galactosidase was inactivated by high temperature more easily but this effect could not be reversed by erythromycin. The first arginine in -galactosidase occurs at residue 13, so the effect of erythromycin during arginine starvation is probably to stimulate dissociation of erroneous peptidyl-tRNAs of at least that length. Correction of errors induced by methionine starvation is probably due to stimulation of dissociation of erroneous peptidyl-tRNAs bearing peptides at least 92 residues in length. All the effects of erythromycin or the tested lincosamides on protein synthesis are probably the result of stimulating the dissociation from ribosomes of peptidyl-tRNAs that are erroneous or short.     

Entwicklungsgeschichte und Ultrastruktur von Pollenkitt und Exine bei nahe verwandten entomophilen und anemophilen Angiospermensippen derAlismataceae,Liliaceae, Juncaceae,Cyperaceae, Poaceae undAraceae

Some closely related members of the monocotyledonous familiesAlismataceae, Liliaceae, Juncaceae, Cyperaceae, Poaceae andAraceae with variable modes of pollination (insect- and wind-pollination) were studied in relation to the ultrastructure of pollenkitt and exine (amount, consistency and distribution of pollenkitt on the surface of pollen grains). The character syndromes of pollen cementing in entomophilous, anemophilous and intermediate (ambophilous or amphiphilous) monocotyledons are the same in principal as in dicotyledons. Comparing present with former results one can summarize: 1) The pollenkitt is always produced in the same manner by the anther tapetum in all angiosperm sub-classes. 2) The variable stickiness of entomophilous and anemophilous pollen always depends on the particular distribution and consistency of the pollenkitt, but not its amount on the pollen surface. 3) The mostly dry and powdery pollen of anemophilous plants always contains a variable amount of inactive pollenkitt in its exine cavities. 4) A step-by step change of the pollen cementing syndrome can be observed from entomophily towards anemophily. 5) From the omnipresence of pollenkitt in all wind-pollinated angiosperms studied one can conclude that the ancestors of anemophilous angiosperms probably have been zoophilous (i.e. entomophilous) throughout.

     

Glycogen phosphorylase in Dictyostelium discoideum: demonstration of two developmentally regulated forms, purification to homogeneity, immunochemical analysis, cAMP induction, in vitro translation, and molecular cloning

A key step in the cellular differentiation of Dictyostelium is the degradation of glycogen to provide the precursors for synthesis of the structural end products of development. We have found that the enzyme that initiates this degradative pathway, glycogen phosphorylase (1,4-alpha-D-glucan:orthophosphate alpha-glucosyltransferase; EC 2.4.1.1), is developmentally regulated and exists as two forms. During the time course of development, a previously undescribed activity, the "b" form, decreases, while that of the "a" form increases. The "b" form is inactive unless 5'AMP is included in the reaction mixture. The two forms differ in their elution from DE52 cellulose, affinity constants, thermal stability, affinity for 5'AMP Sepharose, subunit molecular weight, and peptide maps. In crude extracts, anti-a antiserum stains a 104-kD protein that is associated with phosphorylase "a" activity and appears late in development, while anti-b antiserum stains a 92-kD protein that is associated with phosphorylase "b" activity and is present throughout development. We have also demonstrated in vitro phosphorylation of the "b" form by an endogenous protein kinase and a corresponding loss of 5'AMP dependence. If intact cells were exposed to exogenous cAMP, "b" activity decreased and was replaced by "a" activity, as well as the 104-kD protein band on SDS-PAGE. In order to determine if the two forms of the enzyme are different gene products, we screened lambda gt11 expression libraries with antibodies against the purified "a" and "b" forms. Three clones were found to be overlapping by Southern analysis. A yeast glycogen phosphorylase cDNA clone (gpy) and a human muscle glycogen phosphorylase clone (HM-11) cross-hybridized with the Dictyostelium inserts, and gpy shared a few common restriction fragments with the Dictyostelium clones on genomic blots. Northern analysis of Dictyostelium total RNA showed that the Dictyostelium inserts and gpy recognize an mRNA of 3.2 kb, while on poly A-enriched RNA, the yeast clone detects preferentially a 3.6-kb message.     

Trend,seasonality, cycle,and irregular fluctuations in primary productivity at Lake Tahoe,California-Nevada,USA

Primary productivity has been measured routinely at Lake Tahoe since 1967, and a number of mechanisms underlying variability in the productivity record have now been identified. A long-term trend due to nutrient loading dominates the series. Seasonality also is prominent, apparently controlled by direct physical factors unrelated to the trophic cascade. A 3-yr cycle has been detected and several possible mechanisms are considered. Irregular fluctuations also are present, caused in part by isolated events (a forest fire) and recurring but variable phenomena (spring mixing). Except possibly for the 3-yr cycle, the known sources of variability appear to operate bottom-up through direct physical and chemical effects on the phytoplankton.     

Na,K-ATPase: Isoform structure,function, and expression

An interesting feature of the Na,K-ATPase is the multiplicity of and isoforms. Three isoforms exist for the subunit, 1, 2, and 3, as well for the subunit, 1, 2, and 3. The functional significance of these isoforms is unknown, but they are expressed in a tissue- and developmental-specific manner. For example, all three isoforms of the subunit are present in the brain, while only 1 is present in kidney and lung, and 2 represents the major isoform in skeletal muscle. Therefore, it is possible that each of these isoforms confers different properties on the Na,K-ATPase which allows effective coupling to the physiological process for which it provides energy in the form of an ion gradient. It is also possible that the multiple isoforms are the result of gene triplication and that each isoform exhibits similar enzymatic properties. In this case, the expression of the triplicated genes would be individually regulated to provide the appropriate amount of Na,K-ATPase to the particular tissue and at specific times of development. While differences are observed in such parameters as Na⁺ affinity and sensitivity to cardiac glycosides, it is not known if these properties play a functional role within the cell.Site-directed mutagenesis has identified amino acid residues in the first extracellular region of the subunit as major determinants in the differential sensitivity to cardiac glycosides. Similar studies have failed to identify residues in the second extracellular region involved in cardiac glycoside inhibition. Further analysis of the enzymatic properties of the enzyme, understanding the regulated expression of the genes, and structure-function studies utilizing site-directed mutagenesis should provide new insights into the enzymatic and physiological roles of the various subunit isoforms of the Na,K-ATPase.     

Chlorophyll,carotenoid, and lipid content in Triticum sativum L. plastid envelopes,prolamellar bodies,stroma lamellae,and grana

The pigment and lipid content, expressed on a protein basis, is compared in wheat etioplast and chloroplast membrane fractions. Chloroplast envelopes contain less carotenoid and 1/3 more lipid than etioplast envelopes. The minute amount of chlorophyll and carotenoid found in chloroplast envelopes could be due to thylakoid contamination. Prolamellar bodies and grana have nearly the same amount of total lipid and total carotenoid per mg of protein although their respective compositions differ. On a protein basis, the lipid, chlorophyll, and carotenoid contents are lower (2.3, 10, and 20 times, respectively) in stroma lamellae than in grana membranes, but the latter contains a higher proportion of -carotene, chlorophyll a, and sulfolipid.This research represents partial fulfillment of the thesis Doctorat d'Etat ès Sciences requirements of the author     

Multidisciplinary International Conference on Gynecologic Cancer, Bologna, Italy, June 8-12, 2005

The first "Multidisciplinary International Conference on Gynecologic Cancer" which was held in Bologna on June 8-12, 2005, addressed some of the most crucial topics in gynecologic oncology, presented the latest achievements and, at the same time, designed the guidelines for future developments in the field. The scientific program was intended not only to share and compare views and ideas among gynecologists but also with oncologists and researchers in basic science. The scientific committee strongly believed in the "multidisciplinary approach" towards medicine and particularly towards patients.     

The predatory mite Hypoaspis miles: biological and demographic characteristics on two prey species, the mushroom sciarid fly, Lycoriella solani, and the mould mite, Tyrophagus putrescentiae

The biology of Hypoaspis miles Berlese (Acarina: Hypoaspidae) fed on mushroom sciarid larvae (Lycoriella solani Winnertz) (Diptera: Lycoriidae) and mould mites (Tyrophagus putrescentiae Schrank) (Acari: Acaridae), was investigated by laboratory experiments at 20 °C, 75% r.h. and LD16:D8 hours. H. miles had a significantly shorter development time and a significantly lower juvenile mortality when fed on sciarid larvae than on mould mites, the development time being 14.5 days and the mortality 3.5% on the former prey. The preoviposition and postoviposition periods of H. miles were not uninfluenced by the prey species and were 5–9 and 32–37 days, respectively. Oviposition periods of 53.2 and 68.5 days and female longevities of 82 and 109.6 days were observed on diets of sciarid larvae and mould mites, respectively. Male longevity (168–219 days) was uninfluenced by the prey species. The egg production of H. miles on sciarid larvae was estimated to be 44.4 ± 4.33 eggs per female, as compared to 22.43 ± 1.79 eggs per female on mould mites. The sex-ratio of the offspring was significantly influenced by the prey species, the ratios (/(+)) being 0.66 on sciarid larvae and 0.54 on mould mites. The net reproductive rate (R₀) for H. miles fed on sciarid larvae was approximately 27 which was three times higher than for mites feeding on mould mites. The innate capacity of increase (r_m) was highest (0.0747 day^–1) when sciarid larvae served as food, giving a doubling time of 9.3 days as compared to 12.8 days on mould mites. The generation times were 44.28 on sciarid larvae and 40.67 days on mould mites. The daily food consumption rate of juvenile and adult H. miles was 0.24 and 0.86 sciarid larvae and 10.8 and 21.7 mould mites, respectively. In terms of weight consumed, however, the consumption of sciarid larvae was 2–3.5 times the weight of mould mites. The ratio of females to males influenced the oviposition period and egg production of H. miles, with virgin females laying fewer eggs over a longer period of time as compared with females with access to males. The egg production in relation to the sex-ratio was described by models predicting a maximum number of eggs per female of 22.3 to be attained at a sex ratio of 0.69 (/(+)) and a maximum daily number of eggs per female of 0.33 to be attained at a sex ratio of 0.37 (/(+)).     

Contrasting properties of gene-specific regulatory, coding, and copy number mutations in Saccharomyces cerevisiae: frequency, effects, and dominance

Genetic variation within and between species can be shaped by population-level processes and mutation; however, the relative impact of "survival of the fittest" and "arrival of the fittest" on phenotypic evolution remains unclear. Assessing the influence of mutation on evolution requires understanding the relative rates of different types of mutations and their genetic properties, yet little is known about the functional consequences of new mutations. Here, we examine the spectrum of mutations affecting a focal gene in Saccharomyces cerevisiae by characterizing 231 novel haploid genotypes with altered activity of a fluorescent reporter gene. 7% of these genotypes had a nonsynonymous mutation in the coding sequence for the fluorescent protein and were classified as "coding" mutants; 2% had a change in the S. cerevisiae TDH3 promoter sequence controlling expression of the fluorescent protein and were classified as "cis-regulatory" mutants; 10% contained two copies of the reporter gene and were classified as "copy number" mutants; and the remaining 81% showed altered fluorescence without a change in the reporter gene itself and were classified as "trans-acting" mutants. As a group, coding mutants had the strongest effect on reporter gene activity and always decreased it. By contrast, 50%-95% of the mutants in each of the other three classes increased gene activity, with mutants affecting copy number and cis-regulatory sequences having larger median effects on gene activity than trans-acting mutants. When made heterozygous in diploid cells, coding, cis-regulatory, and copy number mutant genotypes all had significant effects on gene activity, whereas 88% of the trans-acting mutants appeared to be recessive. These differences in the frequency, effects, and dominance among functional classes of mutations might help explain why some types of mutations are found to be segregating within or fixed between species more often than others.     

On consciousness,resting state fMRI,and neurodynamics

Background

During the last years, functional magnetic resonance imaging (fMRI) of the brain has been introduced as a new tool to measure consciousness, both in a clinical setting and in a basic neurocognitive research. Moreover, advanced mathematical methods and theories have arrived the field of fMRI (e.g. computational neuroimaging), and functional and structural brain connectivity can now be assessed non-invasively.

Results

The present work deals with a pluralistic approach to "consciousness'', where we connect theory and tools from three quite different disciplines: (1) philosophy of mind (emergentism and global workspace theory), (2) functional neuroimaging acquisitions, and (3) theory of deterministic and statistical neurodynamics – in particular the Wilson-Cowan model and stochastic resonance.

Conclusions

Based on recent experimental and theoretical work, we believe that the study of large-scale neuronal processes (activity fluctuations, state transitions) that goes on in the living human brain while examined with functional MRI during "resting state", can deepen our understanding of graded consciousness in a clinical setting, and clarify the concept of "consiousness" in neurocognitive and neurophilosophy research.

     

Molecular Interplay between Endostatin, Integrins, and Heparan Sulfate

Endostatin is an endogenous inhibitor of angiogenesis. Although several endothelial cell surface molecules have been reported to interact with endostatin, its molecular mechanism of action is not fully elucidated. We used surface plasmon resonance assays to characterize interactions between endostatin, integrins, and heparin/heparan sulfate. α5β1 and αvβ3 integrins form stable complexes with immobilized endostatin (K_D = ∼1.8 × 10⁻⁸ m, two-state model). Two arginine residues (Arg²⁷ and Arg¹³⁹) are crucial for the binding of endostatin to integrins and to heparin/heparan sulfate, suggesting that endostatin would not bind simultaneously to integrins and to heparan sulfate. Experimental data and molecular modeling support endostatin binding to the headpiece of the αvβ3 integrin at the interface between the β-propeller domain of the αv subunit and the βA domain of the β3 subunit. In addition, we report that α5β1 and αvβ3 integrins bind to heparin/heparan sulfate. The ectodomain of the α5β1 integrin binds to haparin with high affinity (K_D = 15.5 nm). The direct binding between integrins and heparin/heparan sulfate might explain why both heparan sulfate and α5β1 integrin are required for the localization of endostatin in endothelial cell lipid rafts.Endostatin is an endogenous inhibitor of angiogenesis that inhibits proliferation and migration of endothelial cells (1–3). This C-fragment of collagen XVIII has also been shown to inhibit 65 different tumor types and appears to down-regulate pathological angiogenesis without side effects (2). Endostatin regulates angiogenesis by complex mechanisms. It modulates embryonic vascular development by enhancing proliferation, migration, and apoptosis (4). It also has a biphasic effect on the inhibition of endothelial cell migration in vitro, and endostatin therapy reveals a U-shaped curve for antitumor activity (5, 6). Short term exposure of endothelial cells to endostatin may be proangiogenic, unlike long term exposure, which is anti-angiogenic (7). The effect of endostatin depends on its concentration and on the type of endothelial cells (8). It exerts the opposite effects on human umbilical vein endothelial cells and on endothelial cells derived from differentiated embryonic stem cells. Furthermore, two different mechanisms (heparin-dependent and heparin-independent) may exist for the anti-proliferative activity of endostatin depending on the growth factor used to induce cell proliferation (fibroblast growth factor 2 or vascular endothelial growth factor). Its anti-proliferative effect on endothelial cells stimulated by fibroblast growth factor 2 is mediated by the binding of endostatin to heparan sulfate (9), whereas endostatin inhibits vascular endothelial growth factor-induced angiogenesis independently of its ability to bind heparin and heparan sulfate (9, 10). The broad range of molecular targets of endostatin suggests that multiple signaling systems are involved in mediating its anti-angiogenic action (11), and although several endothelial cell surface molecules have been reported to interact with endostatin, its molecular mechanisms of action are not as fully elucidated as they are for other endogenous angiogenesis inhibitors (11).Endostatin binds with relatively low affinity to several membrane proteins including α5β1 and αvβ3 integrins (12), heparan sulfate proteoglycans (glypican-1 and -4) (13), and KDR/Flk1/vascular endothelial growth factor receptor 2 (14), but no high affinity receptor(s) has been identified so far. The identification of molecular interactions established by endostatin at the cell surface is a first step toward the understanding of the mechanisms by which endostatin regulates angiogenesis. We have previously characterized the binding of endostatin to heparan sulfate chains (9). In the present study we have focused on characterizing the interactions between endostatin, α5β1, αvβ3, and αvβ5 integrins and heparan sulfate. Although interactions between several integrins and endostatin have been studied previously in solid phase assays (12) and in cell models (12, 15, 16), no molecular data are available on the binding site of endostatin to the integrins. We found that two arginine residues of endostatin (Arg²⁷ and Arg¹³⁹) participate in binding to integrins and to heparan sulfate, suggesting that endostatin is not able to bind simultaneously to these molecules displayed at the cell surface. Furthermore, we have demonstrated that α5β1, αvβ3, and αvβ5 integrins bind to heparan sulfate. This may explain why both heparan sulfate and α5β1 integrins are required for the localization of endostatin in lipid rafts, in support of the model proposed by Wickström et al. (15).     

47,XXX females,sex chromosomes,and tooth crown structure

Summary Enamel thickness of the maxillary permanent central incisors and canines in seven Finnish 47,XXX females, their first-degree male and female relatives, and control males and females from the general population were determined from radiographs. The results showed that enamel in the teeth of 47,XXX females was clearly thicker than that of normal controls. On the other hand, the thickness of dentin (distance between mesial and distal dentinoenamel junctions) in 47,XXX females' teeth was about the same as that in normal control females, but clearly reduced as compared with that in control males. It is therefore obvious that in the triple-X chromosome complement the extra X chromosome is active in amelogenesis, whereas it has practically no influence on the growth of dentin. The calculations based on present and previous results in 45,X females and 47,XYY males indicate that the X chromosome increases metric enamel growth somewhat more effectively than the Y chromosome. Possibly, halfway states exist between active and repressed enamel genes on the X chromosome. The Y chromosome seems to promote dental growth in a holistic fashion.     

Multi-element analysis of the rat hippocampus by proton induced X-ray emission spectroscopy (phosphorus,sulphur, chlorine,potassium, calcium,iron, zinc,copper, lead,bromine, and rubidium)

Summary A technique for multi-element analysis of brain tissue by proton induced X-ray emission spectroscopy (PIXE) is described and data from analysis of fixed and unfixed samples from rat hippocampus, neocortex, amygdala, and spinal cord is presented and commented on. The atoms present in the tissue are bombarded with protons which causes the ejection of electrons from the inner shells. When the holes are refilled with electrons from outer shells, X-ray quanta characteristic for each element are emitted. Using a high resolution energy dispersive detector a complete X-ray spectrum of the specimen can be recorded in a single measurement. Detection limits 5 p.p.m. of dry matter are obtained for most elements with atomic number >14 (silicon). Around 13 elements were found in concentrations above the detection limits. The grand means for non-fixed hippocampi were e.g. for Zn–120 p.p.m.; Rb–20 p.p.m.; Fe–150 p.p.m.; Pb–3 p.p.m.; Ni–5 p.p.m.     

Individuality,pluralism, and the phylogenetic species concept

The concept of individuality as applied to species, an important advance in the philosophy of evolutionary biology, is nevertheless in need of refinement. Four important subparts of this concept must be recognized: spatial boundaries, temporal boundaries, integration, and cohesion. Not all species necessarily meet all of these. Two very different types of pluralism have been advocated with respect to species, only one of which is satisfactory. An often unrecognized distinction between grouping and ranking components of any species concept is necessary. A phylogenetic species concept is advocated that uses a (monistic) grouping criterion of monophyly in a cladistic sense, and a (pluralistic) ranking criterion based on those causal processes that are most important in producing and maintaining lineages in a particular case. Such causal processes can include actual interbreeding, selective constraints, and developmental canalization. The widespread use of the biological species concept is flawed for two reasons: because of a failure to distinguish grouping from ranking criteria and because of an unwarranted emphasis on the importance of interbreeding as a universal causal factor controlling evolutionary diversification. The potential to interbreed is not in itself a process; it is instead a result of a diversity of processes which result in shared selective environments and common developmental programs. These types of processes act in both sexual and asexual organisms, thus the phylogenetic species concept can reflect an underlying unity that the biological species concept can not.     

Mass-transfer-limited nitrate uptake on a coral reef flat,Warraber Island,Torres Strait,Australia

Previous research has identified a relationship between the rate of dissipation of turbulent kinetic energy, , and the mass-transfer-limited rate of uptake by a surface, herein called the ^1/4 law, and suggests this law may be applicable to nutrient uptake on coral reefs. To test this suggestion, nitrate uptake rate and gravitational potential energy loss have been measured for a section of Warraber Island reef flat, Torres Strait, northern Australia. The reef flat section is 3 km long, with a 3 m tidal range, and on the days measured, subject to 6 m s^–1 tradewinds. The measured nitrate uptake coefficient, S , on two consecutive days during the rising tide was 1.23±0.28 and 1.42±0.52×10^–4 m s^–1. The measured loss of gravitational potential energy across the reef flat, GPE , on the same rising tides over a 178 m section was 208±24 and 161±20 kg m^–1 s^–2. Assuming the GPE is dissipated as turbulent kinetic energy in the water column, and using the ^1/4 law, the mass-transfer-limited nitrate uptake coefficient, S_MTL , on the two days was 1.57±0.03 and 1.45±0.04×10^–4 m s^–1. Nitrate uptake on Warraber Island reef flat is close to the mass-transfer limit, and is determined by oceanographic nitrate concentrations and energy climate.Communicated by B.C. Hatcher