A molecular dynamics study on opioid activities of biphalin molecule

Molecular dynamics simulations of the biphalin molecule, (Tyr-D-Ala-Gly-Phe-NH)₂, and the active tetrapeptide hydrazide, Tyr-D-Ala-Gly-Phe-NH-NH₂ were performed to investigate the cause of the increased μ and δ receptor binding affinities of the former over the latter. The simulation results demonstrate that the acylation of the two equal tetrapeptide fragments of biphalin produces the constrained hydrazide bridges C₄^a - C₄￠- N₉ - N₁₀ {\hbox{C}}_4^{\alpha } - {{\hbox{C}}_4}\prime - {{\hbox{N}}_9} - {{\hbox{N}}_{{10}}} and N₉ - N₁₀ - C₅￠- C₅^a {{\hbox{N}}_9} - {{\hbox{N}}_{{10}}} - {{\hbox{C}}_5}\prime - {\hbox{C}}_5^{\alpha } , which in turn increase the opportunity of conformations for binding to μ or δ receptors. Meanwhile, the connection of the two active tetrapeptide fragments of biphalin also results in the constrained side chain torsion angle χ² at one of the two residues Phe. This constrained side chain torsion angle not only significantly increases the δ receptor binding affinity but also makes most of the δ receptor binding conformations of biphalin bind to the δ receptor through the fragment containing the mentioned residue Phe.     

Genetic effects of forest fragmentation in high-density Araucaria angustifolia populations in Southern Brazil

Araucaria angustifolia is an endangered tropical/subtropical coniferous of great interest for conservation due its economical, ecological, and social value. Only 3% of original Araucaria forests remain, which are generally confined to small forest fragments. Forest fragmentation can have serious consequences on genetic process in tree population, affecting long-term fitness and adaptability. To investigate the effects of forest fragmentation on genetic diversity and the structure of A. angustifolia populations, the genetic diversity of eight microsatellite loci was compared in four small fragmented populations (<22 ha), four tree groups (five to 11 trees) occurring in pastures and in three plots in a large continuous population. The clearest effect of fragmentation was the loss of rare alleles (p ≤ 0.05) in fragmented populations (19.4% to 47.2%) and intermediate frequency (0.05 < p ≤ 0.25) and rare alleles (p ≤ 0.05) in tree groups (19% to 86.1%) in comparison to continuous populations. Fragmented populations have significant higher fixation index ( [^(F)]_\textIS = 0.121 \widehat{F}_{\text{IS}} = 0.121 , P < 0.05) than continuous populations ( [^(F)]_\textIS = 0.083 \widehat{F}_{\text{IS}} = 0.083 , P < 0.05). High genetic differentiation was detected among tree groups ( [^(G)]_\textST^￠ = 0.258 \widehat{G}_{{{\text{ST}}}}^{\prime } = 0.258 , P < 0.01) and low among fragments ( [^(G)]_\textST^￠ = 0.031 \widehat{G}_{{{\text{ST}}}}^{\prime } = 0.031 , P < 0.05) and continuous populations ( [^(G)]_\textST^￠ = 0.026 \widehat{G}_{{{\text{ST}}}}^{\prime } = 0.026 , P < 0.05), showing a significant bottleneck effect in tree groups. Evidence that forest fragments have experienced a recent bottleneck was confirmed in at least two studied fragments. The implications of the results for conservation of the fragmented A. angustifolia populations are discussed.     

Studying Genetic Code by a Matrix Approach

Following Petoukhov and his collaborators, we use two length n zero-one sequences, α and β, to represent a length n genetic sequence ((a) || (b)){\alpha\choose\beta} so that the columns of ((a) || (b)){\alpha\choose\beta} have the following correspondence with the nucleotides: C ~ (0 || 0)C\sim{0\choose0} , U ~ (1 || 0)U\sim{1\choose0} , G ~ (1 || 1)G\sim{1\choose1} , A ~ (0 || 1)A\sim{0\choose1} . Using the Gray code ordering to arrange α and β, we build a 2 ⁿ ×2 ⁿ matrix C _n including all the 4 ⁿ length n genetic sequences. Furthermore, we use the Hamming distance of α and β to construct a 2 ⁿ ×2 ⁿ matrix D _n . We explore structures of these matrices, refine the results in earlier papers, and propose new directions for further research.     

Life history of the nonnative convict cichlid <Emphasis Type="Italic">Amatitlania nigrofasciata</Emphasis> in the Haebaru Reservoir on Okinawa-jima Island,Japan

Life history parameters associated with reproductive biology, age, and growth of the convict cichlid (also known as the zebra cichlid) Amatitlania nigrofasciata, which was introduced into the Haebaru Reservoir on Okinawa-jima Island, were estimated using 437 specimens that ranged from 13.7 to 82.9 mm standard length (SL). Lengths of females at first maturity (SL) and 50% maturity (L ₅₀) were estimated to be 32.2 and 37.3 mm SL, respectively. The spawning period continued throughout the year, with a peak spawning cycle from March to May 2006–2007. Observations of postovulatory follicles and tertiary yolk stage oocytes indicate that convict cichlids spawn multiple times within a year. Female cichlids that hatched during the peak spawning seasons matured after October of the same year. Batch fecundity of females (32.2–61.2 mm SL) ranged from 65 to 345 (mean ± SD = 155 ± 63). Opaque zones along the outer margins of otoliths formed annually. The maximum age of male and female cichlids was 3 years. The von Bertalanffy growth formulae (VBGF) were expressed as L_t = 57.4( 1 - e ^{- 0.78( t + 0.91 )} ) {{\hbox{L}}_{\rm{t}}}{ = 57}{.4}\left( {1 - {e^{ - 0.78\left( {t + 0.91} \right)}}} \right) for females and L_t = 69.5( 1 - e ^{- 1.07( t + 0.24 )} ) {{\hbox{L}}_{\rm{t}}}{ = 69}{.5}\left( {1 - {e^{ - 1.07\left( {t + 0.24} \right)}}} \right) for males. Males grew larger than females beginning from the first year. Certain life history characteristics, such as year-round spawning and early maturation, probably contributed to the successful establishment of the convict cichlid, and this species in particular is thought to adapt and become established quickly upon introduction to freshwater systems on Okinawa-jima Island.     

The tri–μ–hydrido–bis[(η5–C5Me5)aluminum(III)] theoretical study, the assets of sandwiched M2H3 (M of 13th group elements) stability

The stability of the tri–μ–hydrido–bis[(η⁵–C₅Me₅)aluminum], Cp*₂Al₂H₃, 1 is studied at B3LYP/6–311+G(d,p), CCSD(T)//B3LYP/6–311+G(d,p) and MP4//B3LYP/6–311+G(d,p) levels. The coordination between Al₂H₃ entity and both C₅(CH₃)₅ groups is ensured by strong electrostatic and orbital interactions. The orbital analysis of the interacting fragments shows that Al₂H₃ acceptor, which keeps its tribridged structure, implies the vacant ( \texta₁￠ ) \left( {{\text{a}}_1^\prime } \right) and five antibonding (a₂^￠￠ a_2^{\prime \prime } , e′ and e″) molecular orbitals to interact with two orbitals mixtures, b₁ and e" of the donors (C₅Me₅). When we take into account the solvent effect, the computation shows that 1 seems to be stable in condensed phase with a tribridged bond between the Al atoms [Cp*Al(μ-H)₃AlCp*], whereas in the gas phase, the monobridged Cp*AlH(μ-H)AlHCp* 4 is slightly favored (4 kcal mol⁻¹). We propose that 1 could be prepared thanks to Cp*Al (2) and Cp*AlH₂ (3) reaction in acidic medium. The experimental treatment of this type of metallocenes would contribute to the development of the organometallic chemistry of 13th group elements.      

Molecular Characterization of Fecal Microbiota in Patients with Viral Diarrhea

The study provides molecular analyses of fecal microbiota of diarrhea patients infected with four different types of viruses. Fecal specimens from 52 patients with viral diarrhea (13 each of adenovirus, norovirus, rotavirus, and astrovirus) and six healthy individuals were collected and etiological viral agent was confirmed by enzyme immunoassay and specific PCR. To assess the changes in microbial diversity in patients with viral diarrhea, DNA from stool were extracted and characterized by PCR-denaturing gradient gel electrophoresis (DGGE) with universal primers specific for the V3 region of 16S rRNA gene. The strongest bands of the DGGE profiling were excised and sequenced to identify the dominant groups. Bacteroides vulgatus, Bifidobacterium, and Lactobacillus genera were also enumerated by real time PCR. The results revealed that bacterial diversity and similarity in feces from viral diarrhea groups were significantly lower (mean H′/ H _max^￠ H_{ \max }^{\prime } 0.89–0.94, 29–43, respectively) as compared with those of healthy individuals (mean H′/ H _max^￠ H_{ \max }^{\prime } 1.36, 59, respectively). Sequencing of dominant bands affirmed that diarrhea groups were mainly comprised of phylum Firmicutes, such as genera Enterococcus, Peptostreptococcaceae incertae sedi, Streptococcus, Weissella, and Clostridium, and opportunistically pathogenic genus Shigella, while dominant group in healthy individuals was phylum Bacteroidetes. Copy number of Bacteroides vulgatus, Bifidobacterium, and Lactobacillus genera was also reduced significantly in viral diarrhea groups as compared to healthy group. It is concluded that opportunistic pathogens increases, while other species of commensal microbiota decrease significantly in the viral diarrhea patients and dysbacteriosis is dependent on type of virus infection.     

Temporal profile of the singlet oxygen emission endogenously produced by photosystem II reaction centre in an aqueous buffer

The temporal profile of the phosphorescence of singlet oxygen endogenously photosensitized by photosystem II (PSII) reaction centre (RC) in an aqueous buffer has been recorded using laser excitation and a near infrared photomultiplier tube. A weak emission signal was discernible, and could be fitted to the functional form a[exp( - t/t₂ ) - exp( - t/t₁ )] a[\exp ( - t/\tau_{2} ) - \exp ( - t/\tau_{1} )] , with $ a > 0 $ a > 0 and $ \tau_{2} > \tau_{1} $ \tau_{2} > \tau_{1} . The value of t₂ \tau_{2} decreased from 11.6 ± 0.5 μs under aerobic conditions to 4.1 ± 0.2 μs in oxygen-saturated samples, due to enhanced bimolecular quenching of the donor triplet by oxygen, whereas that of t₁ \tau_{1} , identifiable with the lifetime of singlet oxygen, was close to 3 μs in both cases. Extrapolations based on the low amplitude of the emission signal of singlet oxygen formed by PSII RC in the aqueous buffer and the expected values of t₁ \tau_{1} and t₂ \tau_{2} in chloroplasts indicate that attempts to analyse the temporal profile of singlet oxygen in chloroplasts are unlikely to be rewarded with success without a significant advance in the sensitivity of the detection equipment.     

Parametric Maximum Parsimonious Reconstruction on Trees

We give a formal study of the relationships between the transition cost parameters and the generalized maximum parsimonious reconstructions of unknown (ancestral) binary character states {0,1}\{\mathtt{0},\mathtt{1}\} over a phylogenetic tree. As a main result, we show there are two thresholds l¹_n\lambda^{\mathtt{1}}_{n} and l⁰_n\lambda^{\mathtt{0}}_{n}, generally confounded, associated to each node n of the phylogenetic tree and such that there exists a maximum parsimonious reconstruction associating state 1\mathtt{1} to n (resp. state 0\mathtt{0} to n) if the ratio “10\mathtt{1}\mathtt{0}-cost”/“01\mathtt{0}\mathtt{1}-cost” is smaller than l¹_n\lambda^{\mathtt{1}}_{n} (resp. greater than l⁰_n\lambda^{\mathtt{0}}_{n}). We propose a dynamic programming algorithm computing these thresholds in a quadratic time with the size of tree.     

Genetic diversity,genetic drift and mixed mating system in small subpopulations of <Emphasis Type="Italic">Dyckia ibiramensis</Emphasis>, a rare endemic bromeliad from Southern Brazil

Dyckia ibiramensis is a naturally rare, endemic and threatened bromeliad which occurs naturally on 4 km of rocky river outcroppings in Southern Brazil. For this study, subpopulations of the species were characterized based on size and genetics, to compile information for in situ and ex situ conservation strategies. A census of the rosettes was undertaken for each subpopulation and seven allozyme polymorphic loci were used to estimate genetic diversity and structure of adults and offspring and assess the mating system. In general, the subpopulations were small and most of the rosettes were aggregated into clumps. The species showed a high genetic diversity ([^(H)]_e = 0.219 \hat{H}_{e} = 0.219 ) and significant fixation index ([^(f)] = 0.642, \hat{f} = 0.642, P ≤ 0.05). The estimate of differentiation among all adult subpopulations indicate pronounced genetic structure ([^(G)]^￠_ST = 0.674 \hat{G}^{\prime}_{ST} = 0.674 ). D. ibiramensis has a mixed mating system and multilocus outcrossing rates [^(t)]_m \hat{t}_{m} were variable between subpopulations. This study demonstrates the importance of in situ preservation of all subpopulations for the maintenance of species diversity. For effective ex situ conservation, it would be necessary to collect seeds from 52 to 99 seed-rosettes, depending on the target population.     

Expression,subcellular localization,and <Emphasis Type="Italic">cis</Emphasis>-regulatory structure of duplicated phytoene synthase genes in melon (<Emphasis Type="Italic">Cucumis melo</Emphasis> L.)

The emission of molecular iodine (I₂) from the stipe, the meristematic area and the distal blade of the brown macroalga Laminaria digitata (Hudson) Lamouroux (Phaeophyceae) was monitored under low light and dark conditions. Photosynthetic parameters were determined to investigate both the extent of stress experienced by different thallus parts and the effects of emersion on photosynthesis. Immediately after air exposure, intense I₂ emission was detectable from all thallus parts. I₂ emission declined continuously over a period of 180 min following the initial burst, but was not affected by the light regime. The total number of mole of I₂ emitted by stipes was approximately 10 times higher than those emitted from other thallus parts. Initial I₂ emission rates (measured within 30 min of exposure to air) were highest for stipes (median values: 2,999 and 5,222 pmol g⁻¹ dw min⁻¹ in low light and dark, respectively) and lower, by one order of magnitude, for meristematic regions and distal blades. After exposure to air for between 60 and 180 min, I₂ emission rates of all thallus parts were reduced by 70–80%. Air exposure resulted in a decrease of the maximum photosystem II (PSII) efficiency (F _v/F _m) by 3%, and in a 25–55% increase of the effective PSII quantum efficiency ( \Updelta F/F^￠_\textm \Updelta F/F^{\prime}_{\text{m}} ); this was caused by a higher fraction of open reaction centres (q_P), whereas the efficiency of the latter in capturing energy ( F^￠_\textv /F^￠_\textm F^{\prime}_{\text{v}} /F^{\prime}_{\text{m}} ) remained constant. The results indicate the presence of an iodine pool which is easily volatilised and depleted due to air exposure, even under apparently low stress conditions.     

Genetic parameters and predicted selection responses for timber production traits in a Castanea sativa progeny trial: developing a breeding program

Total height, diameter, index volume, stem straightness, apical dominance, and survival were assessed at 8 years from seed in an open-pollinated progeny test of 36 families of European chestnut (Castanea sativa Miller) established at two sites in the Atlantic area of Galicia, Spain. Iterative spatial analysis was applied to eliminate the effect of the spatial dependence in the original data and to estimate accurately genetic parameters for evaluating the potential for selection of the measured trees. Spatial analysis was very beneficial for growth traits and survival, but less so if at all for form traits. Estimated individual heritabilities ranged from moderate to high for growth traits ([^(h)]_i² = 0.29 - 0.42 \widehat{h}_i^2 = 0.29 - 0.42 ) and stem straightness ([^(h)]_i² = 0.24 - 0.42 \widehat{h}_i^2 = 0.{24} - 0.{42} ). High coefficients of additive genetic variance were obtained for volume ( [^(\textC)]\textV_\textA = 36.5 - 41.5% \widehat{\text{C}}{{\text{V}}_{\text{A}}} = {36}.{5} - {41}.{5}\% ) and straightness ( [^(\textC)]\textV_\textA = 44.26 - 53.84% \widehat{\text{C}}{{\text{V}}_{\text{A}}} = {44}.{26} - {53}.{84}\% ). Phenotypic and estimated genetic correlations between growth traits were very high, and correlations between sites indicated that there was no important family × site interaction. No adverse correlations between traits were evident. The results indicate the ample potential for selection in the current progeny trial, where responses to within-family and combined selection for growth traits may be high. Accordingly, three selection scenarios were addressed with the aim to initiate the selection of individuals for implementing the Forest Breeding Plan of Galicia for European chestnut.     

Influence of {\text{NH - }}{{\text{S}}^\gamma } bonding interactions on the structure and dynamics of metallothioneins

Mammalian metallothioneins ( \textM₇^\textIIMTs {\text{M}}_7^{\text{IIMTs}} ) show a clustered arrangement of the metal ions and a nonregular protein structure. The solution structures of Cd₃-thiolate cluster containing β-domain of mouse β-MT-1 and rat β-MT-2 show high structural similarities, but widely differing structure dynamics. Molecular dynamics simulations revealed a substantially increased number of \textNH - \textS^g {\text{NH - }}{{\text{S}}^\gamma } hydrogen bonds in β-MT-2, features likely responsible for the increased stability of the Cd₃-thiolate cluster and the enfolding protein domain. Alterations in the \textNH - \textS^g {\text{NH - }}{{\text{S}}^\gamma } hydrogen-bonding network may provide a rationale for the differences in dynamic properties encountered in the β-domains of MT-1, -2, and -3 isoforms, believed to be essential for their different biological function.     

Model of Active Transport of Ions Through Diatom Cell Biomembrane

A model of the active transport of ions in the Cascinodiscus wailesii diatom cell is constructed taking into account the transport of H⁺, Na⁺, K⁺, Ca⁺², NO₃^-\mathrm{NO}_{3}^{-}, Cl⁻, and NH₄⁺\mathrm{NH}_{4}^{+} ions. This model allows calculating intracellular concentrations of basic ions and the biomembrane resting potential. A hierarchical algorithm “one ion—one transport system” is used in the model. The dependence of the resting potential on the extracellular concentration of potassium is plotted in terms of the model. The calculated values are in good agreement with the corresponding experimental data.     

Physiological characterization of ‘stay green’ wheat cultivars during the grain filling stage under field growing conditions

Rye (Secale cereale L.) chromosome arm 1RS could delay leaf senescence, and change in H₂O₂ content is a useful index for weighing the ability to delay the senescence. Two wheat cultivars, Chuannong12 (CN12) and Chuannong 18 (CN18), harboring the wheat–rye 1BL/1RS translocated chromosome were investigated for H₂O₂ change and physiological index after flowering under field conditions, and MY11, the agronomical parent of both CN12 and CN18, was used as the control. A combined change in the peak value of CdSe/ZnS quantum dot (QD) fluorescence and morphological observation indicated that the H₂O₂ contents in CN12 and CN18 were generally lower than that in MY11. They both had higher values for net photosynthetic rate (P _n), stomatal conductance (G _s), F_\textv /F_\textm^￠ F_{\text{v}} /F_{\text{m}}^{\prime } F_\textv^￠ /F_\textm^￠ F_{\text{v}}^{\prime } /F_{\text{m}}^{\prime } , and photochemical quenching of PSII (qP) than MY11 only in the late measurement stage. Some small differences were also observed, such as CN12 and CN18 wheat cultivars having higher and longer photosynthetic competence than MY11 during the grain filling stage, which perhaps resulted from a mechanism for removing oxidative species, especially H₂O₂.     

Prognose des Stoffhaushaltes von Staugewässern mit Hilfe kontinuierlicher und semikontinuierlicher biologischer Modelle. II. Prüfung der Prognosegenauigkeit. Prediction of the Balance of Matter in Storage Reservoirs by Means of Continuous or Semicontinuous Biological Models. II. Reliability of the Prediction Method

The phosphate removal in small, completely mixed storage reservoirs (preimpoundment basins) mainly is a function of the production of biomass by the phytoplankton. The knowledge of the critical detention time of the water is the most important premise to the prediction. The critical detention time t̄ is computed from the equation: \documentclass{article}\pagestyle{empty}\begin{document}$ \overline t _c = \frac{1}{{\mu ^* - 0,1}} $\end{document} and the growth rate μ* at a given combination of the light intensity J, temperature T and phosphate concentration P is computed from: \documentclass{article}\pagestyle{empty}\begin{document}$ \mu ^* = \frac{{\mu T \cdot \mu J \cdot \mu P}}{{\mu \max ^2 }}\mu \max \cdot \frac{P}{{K_p + P}}\frac{J}{{K_j + J}}\frac{T}{{T_{opt} }}, $\end{document} (μmax = maximum possible growth rate of the dominant species; K_p, K_j and T_opt are constants computed from batch cultures). The quotient \documentclass{article}\pagestyle{empty}\begin{document}$ \frac{{\bar t_{act.} }}{{\bar t_c }}(\bar t_{act.} = {\rm actual detention time in the water body)} $\end{document} enables prediction of the phosphate removal. A comparison of the predicted results from semicontinuous cultures and from the preimpoundment basin of the Weida reservoir revealed a satisfactory degree of conformity.     

In Situ pH Measurement in Partly Frozen Aqueous Solution Using the Fluorescent Probe 8-Hydroxypyrene-1,3,6-Trisulfonic Acid

A method based on the fluorescence probe 8-hydroxypyrene-1,3,6-trisulfonic acid for in situ measurement of pH in partly frozen aqueous solutions was developed using multifrequency, phase-modulated fluorescence spectroscopy inherently correcting for light scattering. The probe was determined to have pK _a = 7.72 ± 0.03 at 25.0 °C extrapolated to zero ionic strength with as derived from temperature dependence (5 to 25 °C investigated). Ionic strength dependence of pK _a determined experimentally was described using Debye–Hückel formalism for ionic strength up to 3 M. Temperature and ionic strength dependence were combined to yield for determination of pH at subzero temperatures with α experimentally determined from the ratio between fluorescence intensity after excitation at 454 and 415 nm, α = FI(454 nm)/2.5·FI(415 nm). Fluorescence could be described as a decay of a single excited state with a fluorescence life time of 5.40 ± 0.05 ns at 25 °C, and excited state acid–base equilibration was shown not to interfere with the pH measurement. Using the method, pH of a 0.25 M phosphate buffer with pH = 6.8 at 25 °C was shown to decrease gradually to pH = 4.2 in the ice slurry at −13 °C.     

Reactive oxygen species production and antioxidative defense system in pea root tissues treated with lead ions: the whole roots level

The lead absorbed by the roots induce oxidative stress conditions through the Reactive oxygen species (ROS) production for the pea plants cultivated hydroponically for 96 h on a Hoagland medium with the addition of 0.1 and 0.5 mM of Pb(NO₃)₂. The alterations in \textO₂ ^{- ·} {\text{O}}_{2}^{ - \cdot } and H₂O₂ concentrations were monitored spectrophotometrically which show a rapid increase in \textO₂ ^{- ·} {\text{O}}_{2}^{ - \cdot } production during the initial 2 h, and in case of H₂O₂, during the eighth hour of cultivation. The level of ROS remained higher at all the time points for the roots of the plants cultivated with Pb²⁺ and it was proportional to metal concentration. The production of \textO₂ ^{- ·} {\text{O}}_{2}^{ - \cdot } and H₂O₂ was visualized by means of fluorescence microscope technique. They are produced in nonenzymatic membrane lipid peroxidation and its final product is Malondialdehyde, the level of which increased together with the level of H₂O₂. As stress intensity raised (duration of treatment and Pb²⁺ concentration), so did the activities of superoxide dismutases, catalase and ascorbate peroxidase antioxidative enzymes and of low-molecular antioxidants, particularly glutathione (GSH), homoglutathione (h-GSH) and cysteine substrate toward their synthesis. The root cells redox state (GSH/GSSG) dropped proportionally to lead stress intensity.     

HNCA-TOCSY-CANH experiments with alternate <Superscript>13</Superscript>C-<Superscript>12</Superscript>C labeling: a set of 3D experiment with unique supra-sequential information for mainchain resonance assignment

Described here is a set of three-dimensional (3D) NMR experiments that rely on CACA-TOCSY magnetization transfer via the weak ³ \textJ_{\textCa\textCa} ^{ 3} {\text{J}}_{{{\text{C}}\alpha {\text{C}}\alpha }} coupling. These pulse sequences, which resemble recently described ¹³C detected CACA-TOCSY (Takeuchi et al. 2010) experiments, are recorded in ¹H₂O, and use ¹H excitation and detection. These experiments require alternate ¹³C-¹²C labeling together with perdeuteration, which allows utilizing the small ³ \textJ_{\textCa\textCa} ^{ 3} {\text{J}}_{{{\text{C}}\alpha {\text{C}}\alpha }} scalar coupling that is otherwise masked by the stronger ¹J_CC couplings in uniformly ¹³C labeled samples. These new experiments provide a unique assignment ladder-mark that yields bidirectional supra-sequential information and can readily straddle proline residues. Unlike the conventional HNCA experiment, which contains only sequential information to the ^{1 3} \textC^a ^{ 1 3} {\text{C}}^{\alpha } of the preceding residue, the 3D hnCA-TOCSY-caNH experiment can yield sequential correlations to alpha carbons in positions i−1, i + 1 and i−2. Furthermore, the 3D hNca-TOCSY-caNH and Hnca-TOCSY-caNH experiments, which share the same magnetization pathway but use a different chemical shift encoding, directly couple the ¹⁵N-¹H spin pair of residue i to adjacent amide protons and nitrogens at positions i−2, i−1, i + 1 and i + 2, respectively. These new experimental features make protein backbone assignments more robust by reducing the degeneracy problem associated with the conventional 3D NMR experiments.     

Self-thinning lines of organs and aboveground parts based on allometric relationships in overcrowded Pinus densiflora stands

The allometric relationships of mean tree height [`(H)]( μ [`(w)]_x^q ) \bar{H}( \propto \bar{w}_{\rm {x}}^{\theta } ) and of organ mass density [`(d)]<sub>x</sub> ( μ [`(w)]_x^d ) \bar{d}_{\rm {x}} ( \propto \bar{w}_{\rm {x}}^{\delta } ) to mean organ mass [`(w)]_x \bar{w}_{\rm {x}} were studied in self-thinning Pinus densiflora Sieb. et Zucc. stands. Tree height increased significantly with increasing mean mass of organs and aboveground parts on log–log coordinates. The value of the allometric constant θ ranged from 0.2878 to 0.3349. On the other hand, the constant value δ was not significantly different from zero, except for leaves. The value of the allometric constant δ ranged from −0.2926 to 0.0120. According to Weller’s allometric model, the slope of the self-thinning line was calculated from the allometric constants θ and δ. The thinning slope was estimated to be −1.51 in stem, −1.39 in branches, −1.00 in leaf and −1.41 in aboveground parts, respectively. Mass density was high in stem, medium in branches and low in leaves. Mean leaf mass density decreased significantly with decreasing stand density on log–log coordinates, which could be interpreted as indicating the importance of the constant final leaf biomass in overcrowded P. densiflora stands. The self-thinning exponents of branch, stem and aboveground parts were not significantly different from 3/2, which indicated that the 3/2 power law of self-thinning holds for stem mass, branch mass and aboveground mass in overcrowded P. densiflora stands.