Genetic evaluation of remnant and translocated shiners,Notropis heterodon and Notropis heterolepis

Population and conservation genetics of two freshwater fish species, Notropis heterodon and Notropis heterolepis, were evaluated in north‐eastern Illinois, U.S.A., where both species have severely declined. Fishes were sampled from two remnant populations occurring in small glacial lakes (source samples) and from two man‐made ponds that had been stocked with fishes from those same lakes (sanctuary samples). The goal was to obtain information that would help inform conservation programme planning to reintroduce sanctuary fishes to areas where both species are extirpated. Microsatellite data showed that the two species were genetically quite distinct and there was no evidence of hybridization in either source or sanctuary samples. Within each species, source and sanctuary samples had moderate levels of heterozygosity and were not significantly different from each other. Many alleles observed in the source samples, however, were not detected in the sanctuary samples, indicating that translocation had resulted in reduced allelic diversity of the sanctuary samples. Sibship analysis indicated that full and half sibs occurred within source‐lake samples, thus reducing the effective population size of the reintroduced stock. Taken together, these results suggest that source‐lake stocks rather than sanctuary stocks are more appropriate for future reintroductions of both species in their native range, unless sanctuary populations can be established with hundreds of fishes. Also, fishes should be harvested from multiple locations in source lakes to avoid over‐representation of family groups.     

Length–weight relationship of six notothenioid species from sub‐Antarctic waters (Beagle Channel,Argentina)

This study presents length‐weight relationships (LWR) for six species of fishes of the Suborder Notothenioidei that inhabit the sub‐Antarctic waters of the Beagle Channel (Argentina). These species represent five of the nine families of this Suborder. The specimens belong to historical fish collections in the area (from 1987 to 1990) using gill and trammel nets. All species but Eleginops maclovinus had no previous LWR estimates. The coefficient of determination (r²) ranged from 0.91 to 0.99 and b values ranged from 2.74 to 3.2. Harpagifer bispinis was the only species with a b value lower than three. This information is useful to predict the weight from the length data and to provide insights into the ecology of sub‐Antarctic nototheniod fish.     

Ecological assessment of finfish as indicators of habitats in the Gulf of Nicoya,Costa Rica

Trawl samples of demersal fish populations within the Gulf of Nicoya, Costa Rica were conducted during February and July, 1979 and April, 1980 in an attempt to define basic abundance, diversity and distributional patterns. Seventeen day and three night samples produced 6 441 fishes of 107 species during the February cruise. Twenty day and two night samples produced 9 220 individuals of 131 species during the July cruise. Twenty day samples produced 14 151 individuals representing 125 species taken during the April cruise. A total of 214 species were collected during this study.The Gulf may be divided into three zones on the basis of the physical characteristics of the stations (water temperature, dissolved oxygen, salinity, depth and distance from the mouth of the Gulf). Few changes in the position of these zones occurred during the study period indicating a relatively stable estuarine configuration from a biological perspective.The Gulf of Nicoya area is under the influence of a wet and a dry season. No significant seasonal changes in the number, biomass, percent occurrence, diversity of partitioning by size class of fishes were observed.Two major types of fish distributional patterns were observed. Several species were ubiquitous and were found throughout the Gulf in varying abundances. Other species were restricted to either the upper or lower Gulf. Dominant groups in the upper Gulf include the sciaenids, sea catfishes (Ariidae) and flatfishes (Soleidae, Cynoglossidae andSyacium ovale). These fishes tend to inhabit the warmer, shallower, less saline waters of the upper Gulf. Flounders (bothidae), gobies (Bollmannia spp.), morays and congers (Hildebrandia nitens, Priodonophus equatorialis andMuraenesox coniceps) and several other species dominated the deeper, cooler, more saline lower Gulf.     

The damselfishes (Pisces: Osteichthyes: Pomacentridae) of Peninsular Malaysia and Singapore: systematics,ecology and conservation

Damselfishes (Pomacentridae) are among the most common of reef fishes in tropical seas, comprising 320 species in all, with 268 species alone in the Indo-West Pacific regions. 15 genera (Abudefduf, Amblyglyphidodon, Amphiprion, Chelioprion, Chromis, Chrysiptera, Dascyllus, Pristotis, Dischistodus, Hemiglyphidodon, Neoglyphidodon, Neopomacentrus, Plectroglyphidodon, Pomacentrus, Stegastes) and at least 39 species inhabit the waters of Peninsular Malaysia and Singapore. They are important ecologically because many species are extremely abundant in reefs, and also economically, as several are collected in large numbers for the lucrative aquarium trade. This demand has led to some fishermen using destructive methods in obtaining the fishes, to the point that original standing populations may not be recoverable. This threat poses a need for conservation of the reefs. The present study based primarily on fishes collected from the waters of Singapore and specimens from the Zoological Reference Collection at the National University of Singapore, will serve the dual purpose of establishing a current species list for Malaysia and Singapore, and to update and clarify the local taxonomy of the group. An annotated list (with localities) is provided of the known or reported species to aid studies on reefs.     

Effect of UV radiation on habitat selection by Girella laevifrons and Graus nigra (Kyphosidae)

The effect of UV radiation on habitat use of two species of intertidal fishes that inhabit the same pools but exhibit different activity levels and diets was measured: the highly active omnivorous Girella laevifrons and the cryptic carnivorous Graus nigra. Individuals of each species were acclimated to a tank divided in three sections with different illumination; no light (NL), ultraviolet light (UV) and white light (WL), and the time spent and number of visits to each section were recorded. Although both species preferred the NL section, G. laevifrons spent more time in UV and less time in WL compared with G. nigra; G. laevifrons also displayed higher number of visits to UV, suggesting a different tendency in space use in response to UV exposure in intertidal fishes.     

Comparative neurochemical features of the innervation patterns of the gut of the basal actinopterygian,Lepisosteus oculatus,and the euteleost,Clarias batrachus

The structure and physiology of enteric system are very similar in all classes of vertebrates, although they have been investigated only occasionally in non‐mammalian vertebrates. Very little is known about the distribution of the neurotransmitters in the gut of actinopterygian fishes. Anatomical and physiological studies of enteric nervous systems in the spotted gar (Lepisosteus oculatus) and airbreathing catfish (Clarias batrachus), a non‐teleost and teleost actinopterygian, respectively, have not been undertaken. This study provides the first comprehensive characterization of the range of neurochemical coding in the enteric nervous system of these two species, including the chemical diversity of the mucosal endocrine cells in the pyloric stomach of Clarias. Autonomic innervation of the secretory glands is also described and reported herein for the first time for fishes. We also report splanchnic (spinal) innervation of the stomach, submucosal ganglia (that also colocalize with nNOS) and caudal intestine of Clarias. In both fish species, numerous 5HT, ChAT, nNOS and TH‐positive nerve fibres have been observed. These discoveries demonstrate that much more physiological and pharmacological data are needed before a comprehensive model of enteric nervous system control in vertebrates can be developed.     

Enteromius pinnimaculatus sp. nov. (Cypriniformes: Cyprinidae) from southern Gabon

We present and describe a new species of Enteromius, adding to the 16 species of Enteromius currently recorded from Gabon, West Africa. This new species is distinguished from all other Gabonese Enteromius by the presence of several distinct spots on the dorsal fin in combination with three or four round spots on the flanks. In Africa, it is superficially similar to Enteromius walkeri and with which it shares an unusual allometry in that the proportional length of the barbels decreases as the fish grows. Nevertheless, one can distinguish these species by vertebral number, maximum standard length, the length of the anterior barbels, the length of the caudal peduncle and in most specimens, the number of lateral-line and circumpeduncular scales. These two species also inhabit widely separated drainages, with E. walkeri occurring in coastal drainages of Ghana including the Pra and Ankobra Rivers and the new species occurring in tributaries of the Louetsi and Bibaka Rivers of Gabon, which are part of the Ogowe and Nyanga drainages, respectively. Despite extensive collections in those drainages the new species is known from only two localities, suggesting the importance of conservation of its known habitat.     

Multi-species response to rapid environmental change in a large estuary system: A biochronological approach

The sensitivity of species to environmental change is dependent on their ecological requirements (i.e. specialist v. generalist), and hence likely to be species-specific. Identifying species level variation in environmental sensitivity informs assessments of community vulnerability and assists in developing adaptive management strategies. We investigated species-specific sensitivity in fish to understand the vulnerability of differing life histories and ecological requirements to rapid environmental alteration (i.e. drought). Biochronologies of fish growth, based on increment widths in otoliths, were analysed using a mixed modelling approach. We assessed multi-decadal responses in fish growth to environmental variation in the terminal system of Australia’s largest river, for three long-lived fish species with differing life histories and ecological requirements: a freshwater specialist and two estuarine generalists. Biochronologies were between 20 and 38 years long, spanned a decade of severe drought and showed considerable inter-annual variation in growth. Precipitation influenced the growth of the obligate freshwater specialist, Macquaria ambigua ambigua. Temperature and salinity influenced the growth of the two estuarine generalists: Argyrosomus japonicus (estuarine opportunist) and Acanthopagrus butcheri (estuarine dependent), respectively. These results suggest that generalisations about how species respond to environmental change may mask species-specific responses to dependent on the constraints of their ecological requirements (i.e. specialist v. generalist). These findings also highlight the importance of considering the diversity of life history strategies that inhabit an ecosystem when developing conservation and management strategies.     

Identification of hemiclonal reproduction in three species of Hexagrammos marine reef fishes

Natural hybrids between the boreal species Hexagrammos octogrammus and two temperate species Hexagrammos agrammus and Hexagrammos otakii were observed frequently in southern Hokkaido, Japan. Previous studies revealed that H. octogrammus is a maternal ancestor of both hybrids; the hybrids are all fertile females and they frequently breed with paternal species. Although such rampant hybridization occurs, species boundaries have been maintained in the hybrid zone. Possible explanations for the absence of introgressions, despite the frequent backcrossing, might include clonal reproduction: parthenogenesis, gynogenesis and hybridogenesis. The natural hybrids produced haploid eggs that contained only the H. octogrammus genome (maternal ancestor) with discarded paternal genome and generated F₁‐hybrid type offspring by fertilization with the haploid sperm of H. agrammus or H. otakii (paternal ancestor). This reproductive mode was found in an artificial backcross hybrid between the natural hybrid and a male of the paternal ancestor. These findings indicate that the natural hybrids adopt hybridogenesis with high possibility and produce successive generations through hybridogenesis by backcrossing with the paternal ancestor. These hybrids of Hexagrammos represent the first hybridogenetic system found from marine fishes that widely inhabit the North Pacific Ocean. In contrast with other hybridogenetic systems, these Hexagrammos hybrids coexist with all three ancestral species in the hybrid zone. The coexistence mechanism is also discussed.     

Gene Expression, Amino Acid Conservation, and Hydrophobicity Are the Main Factors Shaping Codon Preferences in Mycobacterium tuberculosis and Mycobacterium leprae

Mycobacterium tuberculosis and Mycobacterium leprae are the ethiological agents of tuberculosis and leprosy, respectively. After performing extensive comparisons between genes from these two GC-rich bacterial species, we were able to construct a set of 275 homologous genes. Since these two bacterial species also have a very low growth rate, translational selection could not be so determinant in their codon preferences as it is in other fast-growing bacteria. Indeed, principal-components analysis of codon usage from this set of homologous genes revealed that the codon choices in M. tuberculosis and M. leprae are correlated not only with compositional constraints and translational selection, but also with the degree of amino acid conservation and the hydrophobicity of the encoded proteins. Finally, significant correlations were found between GC₃ and synonymous distances as well as between synonymous and nonsynonymous distances. Received: 30 October 1998 / Accepted: 16 August 1999     

Length‐weight and length‐length relationships and form factor of three threatened fishes from the Ganges River (NW Bangladesh)

Data and information are needed to avert the alarming decline and initiate conservation measures for three threatened fishes, Labeo boga (Hamilton, 1822), Nandus nandus (Hamilton, 1822) and Puntius ticto (Hamilton, 1822), from the Ganges River and surrounding ecosystems. These fishes are decreasing rapidly due to high fishing pressures as well as environmental degradation. This study furnishes the length–weight relationships (LWRs), length–length relationships (LLRs) and form factor (a_3.0) of these three threatened species from the Ganges River, northwestern Bangladesh. A total of 773 specimens from the three species and two families used for this study were caught by traditional fishing gear between April 2011 and March 2012. The analysis of covariance (ancova ) revealed significant differences between the sexes in LWRs for L. boga (P < 0.001), but not with the remaining species (P > 0.05). Furthermore, the LLRs were highly correlated (r² > 0.983; P < 0.001), and ancova analyses additionally indicated that LLRs did not differ between sexes (P > 0.05). The calculated form factor (a_3.0) was 0.0111, 0.0159 and 0.0129 for L. boga, N. nandus and P. ticto, respectively. This study presents the first references on LWRs, LLRs and form factor for these three threatened species in Bangladesh. The results would be useful for further studies on the population assessment and sustainable conservation of the limited stocks in the Ganges River ecosystem.     

Fish species diversity in the lakes of Alma-Gol,Adji-Gol,and Ala-Gol,Golestan province,northern Iran

The study was conducted to explore fish species diversity and understand some ecological aspects of the lakes of Golestan province, which represent a group of the small and rather isolated water bodies, from September 2000 to August 2002. With respect to environmental properties, there were no significant differences among wetlands. The results revealed that non-indigenous fish species are found to be dominant in the lakes. Of ten sampled species, four, including sharp belly Hemiculter leucisculus, silver crucian carp Carassius auratus, top mouth gudgeon Pseudorasbora parva, and mosquito fish Gambusia holbrooki, were non-indigenous. Observation of sharp belly and top mouth gudgeon represent actually the first record of these species in these lakes. Endemicism was highest in Adji-Gol (52.37% native) and much lower in Alma-Gol (10.20%) and Ala-Gol (20.43%). Species richness, diversity, and evenness were highest in Adji-Gol and lowest in Ala-Gol. Dominance of non-indigenous species could be explained by their wider ecological and physiological tolerance; therefore, if greater emphasis is not placed on the conservation of native fishes, these species could face continued declines or might be quietly lost in the lakes. The text was submitted by the authors in English.     

A review of the taxonomic status and biology of the Cape Parrot Poicephalus robustus,with reference to the Brown-necked Parrot P. fuscicollis fuscicollis and the Grey-headed Parrot P. f. suahelicus

A review of the taxonomic status of the critically endangered Cape Parrot Poicephalus robustus Gmelin 1788 has important implications concerning the conservation of this species and illegal trade. It is distinguishable from the Brown-necked Parrot P. fuscicollis fuscicollis Kuhl 1820 on the morphometrics of the body and bill, two mitochondrial DNA sequences and its ecology and behaviour. The Grey-headed Parrot P. f. suahelicus Reichenow 1898 is geographically and genetically isolated from the other taxa. Grey-headed Parrots and Brown-necked Parrots are more closely related to each other than either is to the Cape Parrot. Geographically, the Grey-headed Parrot is marginally parapatric with the Cape Parrot, and this account focusses on these taxa. The Cape Parrot is a dietary specialist, and its diet differs from that of the Grey-headed Parrot, which has a wider trophic niche, although both feed on the kernels of unripe fruit. Their feeding behaviour changes in response to seasonally available food and may involve long distance movements. Both species share similar breeding habits, but they breed at different seasons in different habitat types. The two taxa have distinct habitat requirements and distributions. Cape Parrots inhabit, nest and feed in Afromontane mixed Podocarpus forest above 1 000m asl in South Africa, whereas Grey-headed Parrots inhabit a wide range of lowland woodland habitats across south-central Africa. In parapatry, there is no record of hybridisation, probably because of spatial (geographical and altitudinal) and temporal segregation (different breeding seasons). On the basis of these criteria, the Cape Parrot is, and must be recognised, as an independent species.     

Examination of unidentifiable spined loach individuals found in the overlap zone of two tetraploid species within a single river in Japan

An endangered tetraploid spined loach species, Cobitis takenoi (Cypriniformes: Cobitidae; hereafter called Tango loach) is known to inhabit only a single river in Kyoto Prefecture, Japan. Since Tango loach was discovered recently, in 2010, and only described in 2016, its morphology, ecology, and genetics are not well studied. Another tetraploid spined loach species Cobitis sp. BIWAE type A (hereafter, called Ohshima loach) inhabits the same river. The two loaches are reported as morphologically distinguishable from each other. Although the habitats of the two species in the river are segregated (Ohshima loach and Tango loach inhabit the upper and lower reaches, respectively), they overlap to a small degree in the boundary area. Recently, some individuals with morphological characteristics that are intermediate between the two species were found in the overlap zone. It was suspected that hybrids between the two species were produced since breeding seasons of the two species overlapped. To investigate whether the two species produce hybrids, we performed mitochondrial and nuclear DNA analyses on the unidentifiable individuals. Eight individuals unidentifiable to the species level collected in the river between 2017 and 2018 were examined and compared with the Tango and Ohshima loach species. Using mitochondrial DNA (mtDNA) cytochrome b analysis, we found that six individuals had mtDNA types identical to Tango loach and two individuals had mtDNA types identical to Ohshima loach. Furthermore, sequencing analysis of nuclear recombination activating gene 1 (RAG-1) revealed that each species had species-specific alleles. The phylogenetic analysis indicated that alleles in Tango loach were divided into two clusters and those from Ohshima loach formed a single cluster. There were no discrepancies in the combination between mtDNA and nuclear DNA species types within each specimen. DNA fingerprinting analysis (AFLP) showed that the species-unidentifiable individuals exhibited distinctly segregated genetic groups corresponding with Tango and Ohshima loaches. In summary, no hybrids were detected from among any unidentifiable individual examined in this study. New conventional genetic method for discriminating the two sympatric loach species developed here can be effective tool for the conservation of the Tango loach since there was no strict diagnostic morphological character between them.     

An assessment of fish species assemblages in rice fields in West Bengal,India: implications for management

Wetlands such as rice fields and associated canals are congenial habitats for different fishes and provide the foundation of rice‐fish culture. The selection of suitable fish species determines the success for this linkage of aquaculture and agriculture. An assessment of fish assemblages in selected rice fields and associated canals in West Bengal, India documented the candidate species for culture and conservation in rice fields. Indigenous minnow traps made of bamboo were employed in the rice fields and canals for a period of 3 months, to collect and record the fish abundance. A total of 531 fishes representing 19 different species were caught from the rice fields in 30 sampling efforts. From the canals, 13 different fish species totaling 676 fishes were collected in 80 sampling efforts. The fish collected per trap in the rice fields (mean 17.7 ± 1.97 SE) remained significantly different (t = 4.461, df = 112; P < 0.001) from those of the canals (mean 8.05 ± 1.09 SE). Diversity indices ranged between 1.91 and 2.01, with a 53% similarity between the rice fields and canals. Among the fish species collected, Badis badis, Colisa fasciatus and C. lalia exhibited high abundance; the two species Heteropneustes fossilis and Mystus vittatus established as threatened fish categories, showed low abundance. The fish species collected were important as food resources and the ornamental fish trade, and many of them bear potential in regulating mosquitoes in the rice fields. These fish assemblages in the rice fields and associated canals suggest a rice‐fish culture potential for integrating food and health.     

Interactions of exotic and native carnivores in an ecotone, the coast of the Beagle Channel, Argentina

In coasts bordering highly productive seas, there can be a flux of resources to the terrestrial ecosystem, and terrestrial carnivores can use marine prey extensively. Two native, endangered species (otter Lontra provocax and culpeo fox Pseudalopex culpaeus lycoides) and two exotic species (mink Neovison vison and grey fox Pseudalopex griseus) inhabit the Beagle coast. The objectives of this paper are: (1) to describe the diet, habitat use and distribution of otters, mink and foxes on the coast of the Beagle channel and (2) to discuss the role of marine resources in the ecological interactions among these species. Diet was determined from the analysis of 245 faeces, and distribution was established from sign surveys. Marine prey occurred in the scats of 98.3, 70.4, 35.5 and 18.2% of otters, mink, culpeo and grey foxes, respectively. Other terrestrial species also use marine resources in Southern Patagonia. All this evidence suggests that the Fueguian coastal channels provide an illuminating example of allochthonous food subsidies from the sea. In the community of four sympatric predators, two native (and endangered) and two exotic, coexistence appears to be facilitated by a renewing marine food subsidy.     

Home range behaviour of the monogamous Australian seahorse, <Emphasis Type="Italic">Hippocampus whitei</Emphasis>

We provide a quantitative account of local movements in the monogamous Australian species Hippocampus whitei, as a rare report of home range size in fishes living in seagrass habitats. Our study took place in shallow Posidonia seagrass beds in Port Jackson (Sydney Harbour), principally during January to March. Daily monitoring of individual seahorses during underwater observations revealed that both sexes maintained small and apparently undefended home ranges for several breeding cycles at least. Female home ranges were significantly larger than males, when analysed by both the minimum convex polygon and grid cell methods. Home range size was not correlated with either body size or seahorse density. Presumably, home ranges were small in H. whitei because camouflage (to avoid predation and to capture prey), mate fidelity and parental brooding meant they accrued little benefit (and potentially considerable cost) from moving more extensively. Sex differences in home range size may arise from constraints associated with male pregnancy. These fish are among the most sedentary of vertebrates, with relatively small home ranges equalled only by coral reef species. In terms of their conservation, relatively small protected areas may be sufficient to support breeding populations of H. whitei although that limited movement may result in considerable delays in the recolonisation of depleted areas.     

Highly variable reproductive isolation among pairs of Catostomus species

Hybridization between diverged taxa tests the strength of reproductive isolation and can therefore reveal mechanisms of reproductive isolation. However, it remains unclear how consistent reproductive isolation is across species' ranges and to what extent reproductive isolation might remain polymorphic as species diverge. To address these questions, we compared outcomes of hybridization across species pairs of Catostomus fishes in three rivers in the Upper Colorado River basin, where an introduced species, C. commersoni, hybridizes with at least two native species, C. discobolus and C. latipinnis. We observed substantial heterogeneity in outcomes of hybridization, both between species pairs and across geographically separate rivers within each species pair. We also observed hybridization of additional related species with our focal species, suggesting that reproductive isolation in this group involves interactions of multiple evolutionary and ecological factors. These findings suggest that a better understanding of the determinants of variation in reproductive isolation is needed and that studies of reproductive isolation in hybrids should consider how the dynamics and mechanisms of reproductive isolation vary over ecological space and over evolutionary time. Our results also have implications for the conservation and management of native catostomids in the Colorado River basin. Heterogeneity in outcomes of hybridization suggests that the threat posed by hybridization and genetic introgression to the persistence of native species probably varies with extent of reproductive isolation, both across rivers and across species pairs.     

Comparison of genetic population structure between two cyprinids, <Emphasis Type="Italic">Hemigrammocypris rasborella</Emphasis> and <Emphasis Type="Italic">Pseudorasbora pumila</Emphasis> subsp., in the Ise Bay basin,central Honshu,Japan

Two small cyprinid fishes, Hemigrammocypris rasborella and Pseudorasbora pumila subsp. (sensu Nakamura 1963), inhabit similar habitats and often occur sympatrically in the Ise Bay basin, central Honshu Island, Japan. Their genetic population structures were revealed, using sequence data from the mitochondrial cytochrome b gene, and then compared. Hemigrammocypris rasborella populations in the Ise Bay area formed a monophyletic group that has been isolated from eastern (Tenryu River) and western (Lake Biwa–Yodo River) populations at least for several hundred thousand years. Pseudorasbora pumila subsp., endemic to the Ise Bay area, was estimated to have become isolated from its sister subspecies, P. p. pumila, about 5 million years ago. Both H. rasborella and P. pumila subsp. had centers of genetic diversity around the Okazaki Plain in the eastern part of the basin and showed trans-bay distribution of haplotypes or haplotype groups. Their common population structure was explained by geological features in the Ise Bay area, in which a large paleo-river system developed in regression periods, suggesting gene flow among populations of each species in the mid to lower reaches of the paleo-river. Based on the estimated expansion or divergence time, however, not all populations experienced gene flow during the Last Glacial. In contrast to the maintenance of high genetic diversity in H. rasborella, almost all populations of P. pumila subsp. have lost mitochondrial DNA genetic diversity. This implies that effective population size of P. pumila subsp. tended to be smaller, probably because of differences in reproductive ecology, even though the two species have been exposed to similar environmental changes. For conservation of the two species, genetic and adaptive differentiation among local populations should be considered, and attention should be paid to inbreeding depression, especially in P. pumila subsp. An erratum to this article can be found at