Electron microprobe X-ray analysis of polyphosphate granules in Plesiomonas shigelloides

Electron-dense inclusion bodies were found in most Plesiomonas shigelloides cells, regardless of the incubation time. At the 4-hr incubation period, the size of inclusion bodies was distributed in the range of 50 to 150 nm in diameter, and at the logarithmic phase of growth it increased up to a size visible by light microscope. By an electron microprobe X-ray analysis, phosphorus, potassium, and magnesium were detected in the inclusion bodies which confirms the assumption of Pastian and Bromel (Appl. Environ. Microbiol. 47: 216 (1984] that the inclusion bodies have a very similar elemental composition to the polyphosphate granules of C. diphtheriae.     

Electron microprobe analysis of ouabain-exposed ciliary epithelium: PE-NPE cell couplets form the functional units

Aqueous humor is secreted by the bilayered ciliary epithelium. Solutes and water enter the pigmented ciliary epithelial (PE) cell layer, cross gap junctions into the nonpigmented ciliary epithelial (NPE) cell layer, and are released into the aqueous humor. Electrical measurements suggest that heptanol reduces transepithelial ion movement by interrupting PE-NPE communication and that gap junctions may be a regulatory site of aqueous humor formation. Several lines of evidence also suggest that net ciliary epithelial transport is strongly region dependent. Divided rabbit iris-ciliary bodies were incubated in chambers under control and experimental conditions, quick-frozen, cryosectioned, and freeze-dried. Elemental intracellular contents of NPE and PE cells were determined by electron probe X-ray microanalysis. With or without heptanol, ouabain produced concentration- and time-dependent changes more markedly in anterior than in posterior epithelium. Without heptanol, there were considerable cell-to-cell variations in Na gain and K loss. However, contiguous NPE and PE cells displayed similar changes, even when nearby cell pairs were little changed by ouabain in aqueous, stromal, or both reservoirs. In contrast, with heptanol present, ouabain added to aqueous or both reservoirs produced much larger changes in NPE than in PE cells. The results indicate that 1) heptanol indeed interrupts PE-NPE junctions, providing an opportunity for electron microprobe analysis of the sidedness of modification of ciliary epithelial secretion; 2) Na and K undergo faster turnover in anterior than in posterior epithelium; and 3) PE-NPE gap junctions differ from PE-PE and NPE-NPE junctions in permitting ionic equilibration between adjoining ouabain-stressed cells. pigmented ciliary epithelial cells; nonpigmented ciliary epithelial cells; gap junctions; aqueous humor; Na⁺/K⁺ exchange pump; rabbit iris-ciliary body     

Quantitative analysis strengthens qualitative assessment: a case study of Devonian brachiopod species

Species recognition attributed to the brachiopod family Atrypidae is evaluated based on qualitative and quantified morphological characters. I identified two brachiopod species—Pseudoatrypa lineata and Pseudoatrypa devoniana—from a rich assemblage of brachiopods recovered from the middle Devonian Genshaw Formation of the Traverse Group. Qualitative examination suggested that the former had fine-medium-sized ribbing, a narrow hinge line, widened anterior, moderately steep mid-anterior fold, domal shaped dorsal valve, and an inflated ventral valve in contrast to the coarse ribbing, widened hinge line, narrow anterior, gentle mid-anterior fold, arched-shape dorsal valve, and flat ventral valve of the latter. The shell outline appears rounded for P. lineata and elongated for P. devoniana. Quantitative assessment of the morphological characters on the dorsal, ventral, anterior, and posterior regions of the valves of the two species using geometric morphometric and statistical analyses suggests that the morphologies of the two species are considerably different (P  $ \ll $  0.01). Thus, qualitative differences between the two atrypid species were further corroborated by quantitative results. This emphasizes the fact that these two species of Pseudoatrypa were indeed different from each other. This study highlights the necessity of incorporating quantified morphological characters to successfully investigate the taxonomic distinctness of fossil invertebrates to the species level.     

Electron microprobe analysis of frog skin epithelium: Evidence for a syncytial sodium transport compartment

Summary For elucidation of the functional organization of frog skin epithelium with regard to transepithelial Na transport, electrolyte concentrations in individual epithelial cells were determined by electron microprobe analysis. The measurements were performed on 1-m thick freeze-dried cryosections by an energy-dispersive X-ray detecting system. Quantification of the electrolyte concentrations was achieved by comparing the X-ray intensities obtained in the cells with those of an internal albumin standard.The granular, spiny, and germinal cells, which constitute the various layers of the epithelium, showed an identical behavior of their Na and K concentrations under all experimental conditions. In the control, both sides of the skin bathed in frog Ringer's solution, the mean cellular concentrations (in mmole/kg wet wt) were 9 for Na and 118 for K. Almost no change in the cellular Na occurred when the inside bathing solution was replaced by a Na-free isotonic Ringer's solution, whereas replacing the outside solution by distilled water resulted in a decrease of Na to almost zero in all layers. Inhibition of the transepithelial Na transport by ouabain (10^–4 m) produced an increase in Na to 109 and a decrease in K to 16. The effect of ouabain on the cellular Na and K concentrations was completely cancelled when the Na influx from the outside was prevented, either by removing Na or adding amiloride (10^–4 m). When, after the action of ouabain, Na was removed from the outside bathing solution, the Na and K concentration in all layers returned to control values. The latter effect could be abolished by amiloride.The other cell types of the epithelium showed under some experimental conditions a different behavior. In the cornified cells and the light cells, which occurred occasionally in the stratum granulosum, the electrolyte concentrations approximated those of the outer bathing meium under all experimental conditions. In the mitochondria-rich cells, the Na influx after ouabain could not be, prevented by adding amiloride. In the gland cells, only a small change in the Na and K concentrations could be detected after ouabain.The results of the present study are consistent with a two-barrier concept of transepithelial Na transport. The Na transport compartment comprises all living epithelial layers. Therefore, with the exception of some epithelial cell types, the frog skin epithelium can be regarded as a functional syncytium for Na.     

Three-dimensional analysis of DNA replication foci: a comparative study on species and cell type in situ

Chromatin morphology of interphase nuclei in most cell lines of quail (Coturnix coturnix japonica) and chick (Gallus gallus domesticus) embryos shows typical interspecies differences. This intrinsic marker has been used in quail/chick chimerisation experiments, where also differences between cell types were noted. We asked whether similar differences between species and between cell types could be observed in S phase nuclei in situ. In this report, we used bromodeoxyuridine (BrdU) pulse labelling and anti-BrdU immunofluorescence to detect DNA replication foci in the nuclei of identified cells. In the central nervous system of 5- to 7-day-old quail and chick embryos, mesoderm-derived cells with strikingly different morphology and topographical distribution were studied: endothelial, i.e. polarised cells forming continuous tubes, and macrophages, i.e. non-polarised, ameboid or ramified individual cells. Using confocal microscopy, replication foci in the nuclei were assessed quantitatively and three-dimensional visualisations were produced. We consistently observed that: (1) chick, but never quail, nuclei displayed completely confluent replication sites, independent of cell type, and (2) macrophages, but not endothelial cells, had distinct perinucleolar replication sites, independent of species. We thus demonstrate a new relationship between cell type and spatial arrangement of DNA replication sites, and conclude that interspecies differences of chromatin distribution are conserved throughout S phase. Our results strongly recommend that work done on nuclear structure in vitro should not be extrapolated without reservation to cells in vivo. Accepted: 5 January 2000     

Electron microprobe analysis into interactions of a resin-modified glass-ionomer cement and a modified composite with human dentin in vitro

When materials used in restorative dentistry, such as a glass-ionomer cement or a compomer, were applied to dentin, ion exchanges occur between the material and the dentin. This work is based on an assessment in vitro of the ion exchanges occurring over time between (i) a glass-ionomer cement and dentin and (ii) a compomer and dentin. An electron microprobe analysis, technique not previously used for such a study, permitted qualitative and quantitative analysis of the interface and of the peripheral dentin. Analysis of the distribution of the elements in the interface and nearby showed continuous, progressive exchanges between the glass-ionomer cement and the dentin and absence of diffusion between the compomer and the dentin.     

Electron microprobe analysis of juvenile walleye pollock,Theragra chalcogramma,otoliths from Alaska: a pilot stock separation study

Synopsis The incorporation of dissolved oceanic constituents in the otoliths of fish has potential as a chemical tracer for reconstructing the early life history of marine fish. Wavelength dispersive spectrometers on an electron microprobe were used to measure Na, Mg, P, S, Cl, K, Ca, and Sr concentrations on the outer margins of 57 juvenile walleye pollock, Theragra chalcogramma, otoliths from five locations in the Gulf of Alaska and Bering Sea. Discriminant analyses that used various combinations of Na, P, K, Sr, and fish standard length and/or age showed that 60–80% of the samples could be assigned to the correct capture locality. While the concentrations of some of the measured elements correlated with standard length or age of the fish, there are measurable differences among localities when concentrations are length or age corrected, mainly due to differences in Na and K concentrations. Elemental composition of otoliths potentially could be used to assign fish from a mixed stock fishery to original stocks, information that is greatly needed for the effective management of fish stocks.     

Electron microscope assessment of fertilization of rabbit ova treated with concanavalin A and wheat germ agglutinin.

Zonaless rabbit ova, exposed to Concanavalin A or Wheat Germ Agglutinin, then to uterine capacitated sperm produce pronuclear, 2 and 4 stage embryos that are indistinguishable from controls. Absence of cortical granules indicates that the ova were fertilized and not merely activated. Survival of lectin-bearing receptors during the period necessary for fertilization was evaluated in ova marked with ferritin-conjugated lectin.     

Quantitative analysis of trifluoroacetic acid in body fluids of patients treated with halothane

A simple procedure for the quantitative analysis of trifluoroscetic acid (TFA) in urine and serum from patients narcotized with halothane is described. This involves addition of sodium hydroxide to the body fluid, evaporation of the aqueous phase and esterification of TFA in concentrated sulphuric acid with 2,2,2-trichloroethanol. The gaseous phases above the reaction mixture were then analyzed by gas chromatography with a nickel-63 electron-capture detector. The detection limit was 1 μg of TFA per mililitre of body fluid (200 μg of body fluid are analysed) and the relative standard deviation was ±6%. Patients treated with ethrane, another commercial ansesthetic, did not produce any detectable TFA.     

Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data

With the emergence of genome-wide colorimetric in situ hybridization (ISH) data sets such as the Allen Brain Atlas, it is important to understand the relationship between this gene expression modality and those derived from more quantitative based technologies. This study introduces a novel method for standardized relative quantification of colorimetric ISH signal that enables a large-scale cross-platform expression level comparison of ISH with two publicly available microarray brain data sources.     

Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences

Mitotic chromosomes of four Vicia species (V. sativa, V. grandiflora, V. pannonica and V. narbonensis) were subjected to in situ hybridization with probes derived from conserved plant repetitive DNA sequences (18S-25S and 5S rDNA, telomeres) and genus-specific satellite repeats (VicTR-A and VicTR-B). Numbers and positions of hybridization signals provided cytogenetic landmarks suitable for unambiguous identification of all chromosomes, and establishment of the karyotypes. The VicTR-A and -B sequences, in particular, produced highly informative banding patterns that alone were sufficient for discrimination of all chromosomes. However, these patterns were not conserved among species and thus could not be employed for identification of homologous chromosomes. This fact, together with observed variations in positions and numbers of rDNA loci, suggests considerable divergence between karyotypes of the species studied.     

Quantitative genetics: a promising approach for the assessment of genetic variation in endangered species

The measurement of genetic variation is often an important component of endangered species management programs. Each of several tools available to measure genetic diversity has positive and negative attributes. Quantitative genetic techniques have not received much attention in the conservation field, yet they are likely to reveal variation that is most closely associated with components of fitness. In addition, quantitative genetics may not be as logistically difficult for threatened populations as was once thought. Finally, quantitative genetic models provide a better outlook for conservation programs than single-locus models.     

Quantitative analysis and model simplification of an epidemic model with primary and secondary infection

Models of particular epidemiological systems can rapidly become complicated by biological detail which can obscure their essential features and behaviour. In general, we wish to retain only those components and processes that contribute to the dynamics of the system. In this paper, we apply asymptotic techniques to an SEI-type model with primary and secondary infection in order to reduce it to a much simpler form. This allows the identification of parameter groupings discriminating between regions of contrasting dynamics and leads to simple approximations for the model’s transient behaviour. These can be used to follow the evolution of the developing infection process. The techniques examined in this paper will be applicable to a large number of similar models.     

Quantitative analysis of cholesterol nucleation with time in supersaturated model bile

The amount of cholesterol (Ch) crystals formed in supersaturated taurochenodeoxycholate (TCDC) - lecithin (L) solutions of the same Ch saturation index (CSI) but at different Ch thermodynamic activities (Ch A_T) was quantified at different time intervals. The initial Ch nucleation rate (i.e., amount of Ch crystals formed with respect to time) in a Ch A_T = 1.73 and TCDC to L molar ratio (TCDC:L) = 5.1 system was faster than that in a Ch A_T = 1.42 and TCDC:L = 3.4 system. Shaking could enhance the early appearance of Ch crystals and cause the fast initial Ch nucleation rates for the TCDC:L = 5.1 and the TCDC:L = 3.4 systems. The final Ch nucleation rates were faster than the initial Ch nucleation rates for the TCDC:L = 5.1 and the TCDC:L = 3.4 systems. According to a light scattering analysis of vesicle concentration in supersaturated TCDC–L solutions, vesicles provide nucleation sites only in the Ch nucleation process and the vesicle concentration may not be an important factor for the Ch nucleation rate. A model of a mixed TCDC–L micelle releasing Ch molecules together with the surface area of Ch crystals formed was used in the interpretation of the Ch nucleation.     

The migration of sessile organisms: a simulation model with measurable parameters

Abstract. Palaeoecologists have shown that trees migrated at rates of 100–1000 m/yr in response to post-glacial warming. In order to predict the impact of forecast anthropogenic climate changes upon forest ecosystems we need to simulate how trees may migrate in response to the changes predicted for the next 1–2 centuries. These predictions must take account of the impacts upon migration of human land-use and habitat fragmentation. We have developed a spatially-explicit mechanistic model (MIGRATE) able to simulate the migration of a single species across a realistically heterogeneous landscape. MIGRATE uses biological parameters that readily may be estimated from data in the literature or from field studies, and represents the landscape as a grid of cells, each with an associated carrying capacity. A one-dimensional version of MIGRATE has been compared both with Skellam's (1951) diffusion model and with the more recent analytical models of van den Bosch et al. (1990, 1992); despite its fundamentally different approach, MIGRATE provides comparable estimates of migration rates, given equivalent input parameters. An example is described that demonstrates the ability of the two-dimensional version of MIGRATE to simulate the likely pattern of spread of a species across a heterogeneous landscape. It is argued that MIGRATE, or models like it, will play a central role in a spatially-hierarchic modelling strategy that must be developed if we are to achieve the goal of simulating the likely response of trees, and other organisms, to both global climate change and the increasing pressures of human land-use.     

银缕梅物种濒危度的定量分析

采用二级模糊综合评判法进一步分析现存个体和居群数均极少的中国金缕梅科一新属种──银缕梅的物种濒危度。首先挑选对小种群绝灭有影响的随机干扰因素,建立了包括２０个评价指标在内的因素集。然后通过对评价指标定量化和权分配一系列处理,并通过最初一、二层的综合评判,求得濒危度和保护等级,进而确定物种的濒危状态及其在省级和国家级的保护序次。研究结果表明,二级模糊综合评判的方法十分灵敏,可操作性强,它能比较准确地反映植物物种实际濒危状况。     

Flow cytometric assessment of cell viability: a multifaceted analysis

Flow cytometry offers the possibility to simultaneously analyze, on a cell by cell basis, different parameters related to cell viability i.e. cell size, morphology and incorporation of dyes. Different types of analysis: light absorption of unstained/stained cells, forward angle light scattering (FALS), right angle light scattering (RALS) or both, cell fluorescence based on dye retention or dye exclusion (due to erythrosin B, ethidium bromide, fluorescein diacetate, rhodamine 123) were tested and compared, with the classical Trypan blue exclusion test, for their effectiveness in the determination of cell viability. Two types of cells in monolayer cultures (L929, SIRC) and a freshly isolated suspension of mouse splenocytes were used. For each dye, the optimal dose, incubation time and conditions for analysis were determined. Viability indications by different techniques for the three type of cell line and their reliability as compared with Trypan blue were analyzed.     

DNA analysis of tropical plant species: An assessment of different drying methods

Use of molecular techniques to study plant systematics has been restricted to either largely temperate groups or groups from which seed is readily obtained. Dried material has advantages over other methods of preservation for molecular analyses; it is cheap, easily undertaken, overcomes the difficulties associated with seed recalcitrance and the absence of seeding plants in the field, and most taxonomists are familiar with the method. Three drying techniques were assessed using material collected in the tropics. No differences in either the quantity or the quality of DNA extracted from material dried by these methods was detected. The implications of using dried material in molecular analyses are discussed.