Effects of biotic and abiotic factors on the distribution of trout and salmon along a longitudinal stream gradient

Synopsis We examined the influence of biotic and abiotic factors on the distribution, abundance, and condition of salmonid fishes along a stream gradient. We observed a longitudinal change in fish distribution with native cutthroat trout, Oncorhynchus clarki utah, and introduced brown trout, Salmo trutta, demonstrating a distinct pattern of allopatry. Cutthroat trout dominated high elevation reaches, while reaches at lower elevations were dominated by brown trout. A transition zone between these populations was associated with lower total trout abundance, consistent changes in temperature and discharge, and differences in dietary preference. Variation in cutthroat trout abundance was best explained by a model including the abundance of brown trout and diel temperature, whereas variation in brown trout abundance was best explained by a model including the abundance of cutthroat trout and discharge. These results suggest the potential for condition-mediated competition between the two species. The results from our study can aid biologists in prioritizing conservation activities and in developing robust management strategies for cutthroat trout.     

Influence of herbivory and abiotic factors on the distribution of tall forbs along a productivity gradient: a transplantation experiment

In arctic-alpine areas tall herb vegetation is restricted to sites with high productivity. At higher elevation, low prostate forbs and narrow-leaved graminoids dominate the vegetation in sites with a protecting snow cover during winter. In this study, I test whether herbivory or abiotic factors prevent tall forbs from growing at higher altitudes. Vegetation blocks from a tall herb meadow were transplanted to herbivore exclosures and open plots in a low-productive snowbed and a productive tall herb meadow. The tall forbs performed equally well in the exclosures on the low-productive snowbed as in the tall herb meadow, but decreased in the open plots on the low-productive snowbed. Thus, even if abiotic factors are ultimately causing many of the vegetation patterns observed in arctic-alpine plant communities, herbivory appears to be the main proximate factor responsible for the decreasing abundance of tall forbs along gradients of decreasing productivity in arctic-alpine areas.     

Reactive oxygen species and protein oxidation in aging: a look back, a look ahead.

The existence of free radicals, as chemical entities, was inferred 100 years ago but not universally accepted for some 30-40 years. The existence and importance of free radicals in biological systems was not recognized until the mid 1950s, by a small number of visionary scientists who can be credited with founding the field of reactive oxygen biochemistry. For most of the remaining 20th century, reactive oxygen species (ROS) were considered a type of biochemical "rusting agent" that caused stochastic tissue damage and disease. As we enter the 21st century, reactive oxygen biochemistry is maturing as a discipline and establishing its importance among the biomedical sciences. It is now recognized that virtually every disease state involves some degree of oxidative stress. Moreover, we are now beginning to recognize that ROS are produced in a well-regulated manner to help maintain homeostasis on the cellular level in normal, healthy tissue. This review summarizes the history of reactive oxygen biochemistry, outlining major paradigm shifts that the field has undergone and continues to experience. The contributions of Earl Stadtman to the recent history of the field (1980-present) are especially highlighted. The role of ROS in signal transduction is presented in some detail as central to the latest paradigm shift. Emerging technologies, particularly proteomic technologies, are discussed that will facilitate further evolution in the field of reactive oxygen biochemistry.     

Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield

Spatial patterns of microbial communities have been extensively surveyed in well‐developed soils, but few studies investigated the vertical distribution of micro‐organisms in newly developed soils after glacier retreat. We used 454‐pyrosequencing to assess whether bacterial and fungal community structures differed between stages of soil development (SSD) characterized by an increasing vegetation cover from barren (vegetation cover: 0%/age: 10 years), sparsely vegetated (13%/60 years), transient (60%/80 years) to vegetated (95%/110 years) and depths (surface, 5 and 20 cm) along the Damma glacier forefield (Switzerland). The SSD significantly influenced the bacterial and fungal communities. Based on indicator species analyses, metabolically versatile bacteria (e.g. Geobacter) and psychrophilic yeasts (e.g. Mrakia) characterized the barren soils. Vegetated soils with higher C, N and root biomass consisted of bacteria able to degrade complex organic compounds (e.g. Candidatus Solibacter), lignocellulolytic Ascomycota (e.g. Geoglossum) and ectomycorrhizal Basidiomycota (e.g. Laccaria). Soil depth only influenced bacterial and fungal communities in barren and sparsely vegetated soils. These changes were partly due to more silt and higher soil moisture in the surface. In both soil ages, the surface was characterized by OTUs affiliated to Phormidium and Sphingobacteriales. In lower depths, however, bacterial and fungal communities differed between SSD. Lower depths of sparsely vegetated soils consisted of OTUs affiliated to Acidobacteria and Geoglossum, whereas depths of barren soils were characterized by OTUs related to Gemmatimonadetes. Overall, plant establishment drives the soil microbiota along the successional gradient but does not influence the vertical distribution of microbiota in recently deglaciated soils.     

青杨雌雄群体沿海拔梯度的分布特征

以小五台山天然青杨种群为试验对象,通过在其分布海拔范围内(1400-1700 m)设置样方的方式研究青杨雌雄群体的平均胸径、密度、性比、大小级结构和空间分布的差异.结果显示:雌株群体的平均胸径在整个海拔梯度上无显著差异,而海拔1700 m处的群体密度显著低于其它海拔;雄株群体的平均胸径在海拔1700 m最大,显著高于其它海拔,而群体密度在各海拔梯度间无显著差异.在海拔1600 m,雌雄群体的平均胸径最接近,同时密度也最接近.从整个海拔范围来看,青杨雌雄个体的比例(雄/雌)为0.80∶1,性比不偏离1∶1(x2=2.94,P＞0.05).但在不同海拔梯度上性比有所不同,低海拔性比为0.44,显著偏雌(X21400=5.91,P＜0.05),而高海拔性比为2.55,显著偏雄(x21700=6.56,P＜0.05);随着海拔接近1600 m,性比逐渐趋于1:1(x21600=0,P＞0.05).除海拔1700 m为下降型外,青杨雌雄群体的大小级结构在其它海拔主要表现为稳定型.而最稳定群体结构的分布海拔在雌雄群体间不同.在海拔1400 m,雌株群体中I级和Ⅱ级植株占群体比例最大;雄株群体I级和Ⅱ级植株占群体比例最大的海拔是1600 m.群体空间分布以聚集分布为主,彼此间无明显差异;但群体间聚集强度的变化在海拔梯度上各有不同,主要表现为雌株群体的PAI随海拔的升高逐渐增加,而雄株群体的PAI则随海拔的升高呈现出先增加后减少的趋势.研究结果表明了青杨雌雄群体的分布特征沿海拔梯度的变化明显不同,中等海拔区域可能为青杨种群的最适繁衍区.     

东北地区不同纬度农田土壤碱解氮的剖面分布

为研究农田土壤碱解氮的含量及其分布,以东北玉米带不同纬度农田土壤为对象,研究了100cm深度范围内碱解氮含量垂直分布及纬向分异特征。结果表明:土壤碱解氮主要分布在0～60cm土层中,各样点碱解氮含量随土壤深度的增加而减少;除公主岭点外,其它各点0～60cm的3个土层间碱解氮含量差异显著(P<0.05);碱解氮含量与有机碳、全氮含量极显著正相关(P<0.01),说明土壤碱解氮含量及其分布主要受土壤有机质和氮素水平的影响。0～20cm土层碱解氮含量具有随纬度增加而增加的趋势,气候条件和土壤类型的差异是导致其纬向分布差异的主要原因。     

Temperature,invaders and patchy habitat interact to limit the distribution of a vulnerable freshwater fish

Interacting global‐change drivers such as invasive species and climate warming are likely to have major and potentially unexpected influences on aquatic ecosystems. In river networks, modified water temperature combined with patchy physical conditions will likely cause shifts in the amount and distribution of suitable habitat, with influential invasive species further altering habitat availability. We examined how distributions of a thermally sensitive galaxiid fish native to the alpine rivers of New Zealand, Galaxias paucispondylus, were influenced by these drivers using spatially extensive presence–absence electrofishing surveys of 46 sites spread over four subcatchments. A unimodal response to water temperature and an interaction with substratum size meant G. paucispondylus were limited to streams with average summer water temperatures between 10.6 and 13.8 °C and were absent when average substratum sizes were <36 mm, regardless of temperature. In addition, non‐native trout >150 mm long excluded G. paucispondylus, but were only found in streams with average summer water temperatures <10.6 °C. These influences of trout likely strengthened the unimodal temperature response of G. paucispondylus and led to a very small G. paucispondylus realized niche. When predicted temperature increases were applied to catchment models, G. paucispondylus distributions were patchy and variable across subcatchments. Moreover, local physical characteristics of river networks were particularly important because of the non‐linear and interactive influences of temperature and substratum size on the outcome of species interactions. Therefore, substratum sizes, water temperature and a non‐native predator combined to influence the distribution of this thermally sensitive fish, illustrating how the effects of climate warming will likely be strongly context‐dependent and interactive.     

Effects of freshwater shrimp assemblages on benthic communities along an altitudinal gradient of a tropical island stream

1. In tropical island stream ecosystems freshwater shrimps are often the dominant macroconsumers and can play an important role in determining benthic community composition. However, most studies of the ecological role of shrimps are limited to high‐altitude shrimp‐dominated sites where other biota (fishes and snails) are absent or significantly less abundant than at lower altitudes. 2. We examined how effects of different shrimp assemblages on benthic communities changed along an altitudinal gradient in a tropical island stream in Puerto Rico. We used electroshocking and observations to quantify abundance and taxonomic composition of shrimp assemblages at three sites (300, 90 and 10 m a. s. l) along the Río Espíritu Santo. We also experimentally manipulated access of shrimps to the benthic environment simultaneously at each site using electric fences over a 35‐day period. 3. At the high‐altitude site, exclusion of shrimps (predominantly Atya spp. and Xiphocariselongata) resulted in significantly greater accrual of organic and inorganic material, chlorophyll a and algal biovolume. In the absence of shrimps, the algal community was dominated by filamentous green algae (Chlorophyta: Oedogonium and Rhizoclonium). Excluding shrimps did not affect total insect biomass but significantly increased sessile chironomids (Diptera: Chironomidae). We observed similar treatment effects at the mid‐altitude site where shrimps (primarily Macrobrachium spp. and X. elongata) occurred at lower densities. In contrast, at the low‐altitude site there were no treatment differences in organic and inorganic material, chlorophyll a, algal biovolume, algal assemblage composition and insects. 4. The lack of treatment differences at the low‐altitude site was probably because of very high densities of grazing snails (Thiaragranifera and Neritina spp.) which reduced organic and inorganic resources and obscured potential shrimp effects. 5. This study demonstrates that freshwater shrimps can play an important role in determining benthic community composition; however, their effects vary and appear to depend on the presence of other biota. This study suggests that loss of shrimps as a result of anthropogenic disturbances will have different effects on the stream community depending upon location along the altitude gradient.     

Responses of an Australian freshwater turtle to drought‐flood cycles along a natural to urban gradient

Urban areas provide habitat for numerous native species, but life in towns and cities presents many challenges. The effect of climate on the ecology and the behaviour of non‐volant vertebrates inhabiting urban habitats have received little attention. In this study, we investigated demography, growth rates, movements and reproduction of a semi‐aquatic freshwater turtle, Chelodina longicollis, along a natural to urban gradient during a period of relatively high rainfall (2011–2014) and compared this to a previous study in the same system during drought (2006–2007). In addition to changes in rainfall, urbanization increased considerably over the same time period and a pest‐exclusion fence was constructed to mitigate against urban hazards encroaching on the adjacent reserve. Turtles grew at similar rates, had similar abundances and sex ratios and had similar reproductive output across the gradient from urban to non‐urban sites during the wet period. Despite increasing urbanization, recruitment occurred at all sites and survivorship estimates were similar among sites. Turtles moved among wetlands at high rates and over long distances (6 km), underscoring the importance of movements in urban landscapes. Our results contrast with those for the same system during drought, when turtles were less abundant and grew slower in the nature reserve compared with the urban environment. Our results underscore the strong influence climate can have on population dynamics and resilience of species to changes brought about by urbanization. Further monitoring is required to understand the long‐term population responses of long‐lived species to drought cycles.     

Species composition of an ectomycorrhizal fungal community along a local nutrient gradient in a boreal forest

Soil abiotic factors are considered to be important in determining the distribution of ectomycorrhizal (ECM) fungal species; however, there are few field data to support this. Here, we relate ECM species distributions to changes in soil chemistry along a short (90-m), natural nutrient gradient. The ECM community was characterized, using morphological and molecular techniques, in soil samples collected at 10-m intervals. There were pronounced changes in ECM fungal community structure along the transect, with many taxa showing discrete distributions. Although there was a change of host from Pinus to Picea along the gradient, host-specific fungi did not account for the observed change in community structure. Ordination analyses showed that community structure was strongly correlated with soil characteristics, in particular extractable ammonium and base saturation. However, autocorrelation among soil parameters makes it difficult to isolate the effects of individual parameters. The distinctive changes in soil and vegetation along the transect used in this study provided an exceptional opportunity to examine the local-scale impact of natural spatial heterogeneity on an ECM fungal community.     

Isolation of an osmotin-like protein gene from strawberry and analysis of the response of this gene to abiotic stresses

A strawberry genomic clone containing an osmotin-like protein (OLP) gene, designated FaOLP2, was isolated and sequenced. FaOLP2 is predicted to encode a precursor protein of 229 amino acid residues, and its sequence shares high degrees of homology with a number of other OLPs. Genomic DNA hybridization analysis indicated that FaOLP2 represents a multi-gene family. The expression of FaOP2 in different strawberry organs was analyzed using real-time PCR. The results showed that FaOLP2 expressed at different levels in leaves, crowns, roots, green fruits and ripe red fruits. In addition, the expression of FaOLP2 under different abiotic stresses was analyzed at different time points. All of the three tested abiotic stimuli, abscisic acid, salicylic acid and mechanical wounding, triggered a significant induction of FaOLP2 within 2-6h post-treatment. Moreover, FaOLP2 was more prominently induced by salicylic acid than by abscisic acid or mechanical wounding. The positive responses of FaOLP2 to the three abiotic stimuli suggested that strawberry FaOLP2 may help to protect against osmotic-related environmental stresses and that it may also be involved in plant defense system against pathogens.     

Beta diversity of aquatic invertebrates increases along an altitudinal gradient in a Neotropical mountain

Mountains harbor rich biodiversity and high levels of endemism, particularly due to changes in environmental conditions over short spatial distances, which affects species distribution and composition. Studies on mountain ecosystems are increasingly needed, as mountains are highly threatened despite providing ecosystem services, such as water supply for half of the human population. We aimed to understand the patterns and drivers of alpha and beta diversities of aquatic invertebrates in headwater streams along an altitudinal gradient in the second largest South American mountain range, the Espinhaço mountains. Headwater streams were selected at each 100 m of elevation along an altitudinal gradient ranging from 800 to 1400 m asl, where three substrate types per stream were sampled: leaf litter, gravel, and cobbles. Environmental variables were sampled to represent local riparian canopy cover, instream physical habitat, water quality, climatic data, and land use. Generalized linear models and mixed models were used to test relationships between altitude and the richness and abundance of invertebrates and to assess the influence of environmental variables on the same metrics. Patterns of spatial variation in aquatic invertebrate assemblages along the altitudinal gradient were assessed using multiplicative beta diversity partitioning. The richness and abundance of aquatic invertebrates decreased with increasing altitude, whereas beta diversity increased with increasing altitude. Significant differences in assemblage composition and in relative abundance of invertebrates were observed for both substrates and altitude. We thus show that the high regional beta diversity in aquatic ecosystems in the studied site is due to the high turnover among areas. Abstract in Portuguese is available with online material.     

Spatial distribution of bryophytes along a moisture gradient: an approach using photosynthetic pigments as indicators of stress

Height above water table in aquatic habitats has long been recognized as the key factor for determining the spatial structure of bryophyte assemblages. Using photosynthetic pigments as indicators of stress along a wet-to-dry gradient, I tested whether different habitat preferences were revealed. A field experiment was set up to obtain a semi-natural hydrological gradient. The spatial distribution of species was quantified by determining the pigment content in natural assemblages and by applying the regression equations derived from the experimental manipulation. The species were able to move water in quantities that were statistically significantly different from each other, which was in agreement with the species characteristics and the colony architectures. Photosynthetic pigments responded in a complex way to the water gradient and, for each species, one or more stress indicators were reliable. A wide overlapping of spatial distribution exists in natural conditions, especially in complex habitats like springs. Although in this study a restricted selection of species has been examined, the method proposed to evaluate the theoretical height above water table is coherent with the broad spatial pattern observed. This approach may be particularly useful for understanding both the coexistence of similar species and the spatial distributions of bryophytes in spring habitats in relation to water stress tolerance.     

Transition from a random to an ideal free to an ideal despotic distribution: the effect of individual difference in growth

Individual differences in growth can lead to a monopolistic form of food competition. We studied the long-term transition in the mode of competition and the distribution of individuals between food patches of the cloned salmonid fish, Oncorhynchus masou ishikawae, in the laboratory. This transition was accompanied by growth depensation, i.e., the increase over time in the variance of size between individuals resulting from the differences in individual growth rates. The 120-cm experimental tanks were divided into two compartments (patches) between which an opaque partition was placed. Fish were able to move freely between the patches and therefore were able to assess the patch quality using long-term memory, but they were not able to see the food input in the other patch directly. The distribution between the two food patches, the amount of food gained, and the growth and the agonistic behavior of four groups of six individuals were observed over 4 weeks. We found that (1) within-group variation in body weight increased with time; (2) on average, the better patch was used by more individuals than predicted by a random distribution but fewer individuals than predicted by an ideal free distribution, and (3) the distribution and pattern of resource use by the fish changed over the 4-week experimental period from a random distribution to an ideal free distribution and finally to an ideal despotic distribution. We suggest that growth depensation causes the long-term change in the spatial distribution and pattern of resource use by competitors. Received: December 19, 2000 / Accepted: March 19, 2001     

中国东北样带土壤氮的分布特征及其对气候变化的响应

根据2001年中国东北样带土壤全氮和有效氮的实测数据,结合CO₂浓度倍增与不同土壤湿度的模拟试验数据,对土壤全氮和有效氮的梯度分布、影响因子分析及其对气候变化的响应进行研究.结果表明,样带土壤表层全氮和有效氮的梯度分布与土壤有机碳的分布基本一致:沿经度呈现东高西低的趋势,局部由于土壤退化而出现低谷.土壤全氮的剖面分布和土壤有机碳相似,而土壤有效氮则有所不同.样带土壤全氮和有效氮与土壤pH、有机碳、全磷、全硫、全锌、土壤活性碳、有效磷、有效钾、有效锰、有效锌、土壤容重、田间持水量、土壤总孔度等因子均呈显著或极显著的相关关系.样带土壤全氮和有效氮与降雨量之间呈极显著的正相关关系(r=0.682,P＜0.001和0.688,P＜0.001).短期培养试验中,CO₂浓度倍增和不同土壤湿度下土壤全氮和有效氮的变异较小(变异系数分别是5.55%和3.84%),但可反映一定的变化趋势.     

Scavenging of reactive oxygen species and prevention of oxidative neuronal cell damage by a novel gallotannin,pistafolia A

Pistafolia A is a novel gallotannin isolated from the leaf extract of Pistacia weinmannifolia. In the present investigation, the ability of Pistafolia A to scavenge reactive oxygen species including hydroxyl radicals and superoxide anion was measured by ESR spin trapping technique. The inhibition effect on iron-induced lipid peroxidaiton in liposomes was studied. The protective effects of Pistafolia A against oxidative neuronal cell damage and apoptosis induced by peroxynitrite were also assessed. The results showed that Pistafolia A could scavenge both hydroxyl radicals and superoxide anion dose-dependently and inhibit lipid peroxidation effectively. In cerebellar granule cells pretreated with Pistafolia A, peroxynitrite-induced oxidative neuronal damage and apoptosis were prevented markedly. The antioxidant capacity of Pistafolia A was much more potent then that of the water-soluble analog of vitamin E, Trolox. The results suggested that Pistafolia A might be used as an effective natural antioxidant for the prevention and cure of neuronal diseases associated with the production of peroxynitrite and related reactive oxygen species.     

Local coexistence of tree species and the dynamics of global distribution pattern along an environmental gradient: a simulation study

A spatially explicit tree-based model was used to demonstrate the effects of a mechanism promoting multiple-species coexistence on the development of vegetation zonation and its response to climate change. Temporal fluctuation in reproduction was incorporated as the mechanism, which facilitates the persistence of less competitive species. Four hypothetical tree species with different temperature dependencies of seed production were randomly located over a landscape represented by 2,000×40 cells. Each cell can sustain a single tree at most. A zonal distribution pattern emerged corresponding to the temperature gradient along the long axis of the landscape. When there was a temporal variation in seed production, species became distributed over a wider range than that when seed production was constant. When the whole landscape was warmed, the distribution range of each species shifted towards the cool end of the landscape. However, the migration was retarded due to competition for vacant spaces with the remnant species which had dominated the location before the warming. Temporal fluctuation in reproduction facilitated the migration because it enhanced the persistence of minority species and, thus, the invasion and establishment of new species in the area dominated by other species.