Functional Roles of Centridini Oil Bees and Malpighiaceae Oil Flowers in Biome‐wide Pollination Networks

Interactions between oil‐collecting bees and oil‐producing flowers are a very specialized mutualism, whose natural history is well known at the organism and population levels. In this study, we assessed these interactions at the biome level with a network approach, and hypothesized that widespread bee and plant species would occupy different ecological functional roles (Eltonian niches) in different biomes. Furthermore, we expected the most important functional roles in each network to be occupied more frequently by Byrsonima oil flowers and Centris oil bees, which share the longest coevolutionary history in the Neotropics. By compiling data from 40 articles on oil flower interactions within the Malpighiaceae family, we built six networks for different Brazilian biomes. We assessed the ecological functional role of each species in pollination networks of oil flowers through the metric known as ‘network functional role’. Although 90 percent of the species occupied peripheral roles in each network, some were found to occupy highly central roles. Oil flowers of the genera Byrsonima and Banisteriopsis and oil bees of the genera Centris and Epicharis were the most important species in all networks, as they made a disproportionally high number of interactions (hubs), or helped bind together different modules (connectors). Our findings suggest that functional roles vary geographically and seem to be affected by local conditions in different biomes. Furthermore, coevolutionary history seems to play an important role in determining functional roles in oil flower networks, although other factors are probably also important, especially the degree of specialization in this kind of interaction.     

Do asynchronies in extinction debt affect the structure of trophic networks? A case study of antagonistic butterfly larvae–plant networks

Habitat loss and fragmentation affect species richness in fragmented habitats and can lead to immediate or time‐delayed species extinctions. Asynchronies in extinction and extinction debt between interacting species may have severe effects on ecological networks. However, these effects remain largely unknown. We evaluated the effects of habitat patch and landscape changes on antagonistic butterfly larvae–plant trophic networks in Mediterranean grasslands in which previous studies had shown the existence of extinction debt in plants but not in butterflies. We sampled current species richness of habitat‐specialist and generalist butterflies and vascular plants in 26 grasslands. We assessed the direct effects of historical and current patch and landscape characteristics on species richness and on butterfly larvae–plant trophic network metrics and robustness. Although positive species‐ and interactions–area relationships were found in all networks, structure and robustness was only affected by patch and landscape changes in networks involving the subset of butterfly specialists. Larger patches had more species (butterflies and host plants) and interactions but also more compartments, which decreased network connectance but increased network stability. Moreover, most likely due to the rescue effect, patch connectivity increased host‐plant species (but not butterfly) richness and total links, and network robustness in specialist networks. On the other hand, patch area loss decreased robustness in specialist butterfly larvae–plant networks and made them more prone to collapse against host plant extinctions. Finally, in all butterfly larvae–plant networks we also detected a past patch and landscape effect on network asymmetry, which indicates that there were different extinction rates and extinction debts for butterflies and host plants. We conclude that asynchronies in extinction and extinction debt in butterfly–plant networks provoked by patch and landscape changes caused changes in species richness and network links in all networks, as well as changes in network structure and robustness in specialist networks.     

Using historical woodland creation to construct a long‐term,large‐scale natural experiment: the WrEN project

Natural experiments have been proposed as a way of complementing manipulative experiments to improve ecological understanding and guide management. There is a pressing need for evidence from such studies to inform a shift to landscape‐scale conservation, including the design of ecological networks. Although this shift has been widely embraced by conservation communities worldwide, the empirical evidence is limited and equivocal, and may be limiting effective conservation. We present principles for well‐designed natural experiments to inform landscape‐scale conservation and outline how they are being applied in the WrEN project, which is studying the effects of 160 years of woodland creation on biodiversity in UK landscapes. We describe the study areas and outline the systematic process used to select suitable historical woodland creation sites based on key site‐ and landscape‐scale variables – including size, age, and proximity to other woodland. We present the results of an analysis to explore variation in these variables across sites to test their suitability as a basis for a natural experiment. Our results confirm that this landscape satisfies the principles we have identified and provides an ideal study system for a long‐term, large‐scale natural experiment to explore how woodland biodiversity is affected by different site and landscape attributes. The WrEN sites are now being surveyed for a wide selection of species that are likely to respond differently to site‐ and landscape‐scale attributes and at different spatial and temporal scales. The results from WrEN will help develop detailed recommendations to guide landscape‐scale conservation, including the design of ecological networks. We also believe that the approach presented demonstrates the wider utility of well‐designed natural experiments to improve our understanding of ecological systems and inform policy and practice.     

Motifs in bipartite ecological networks: uncovering indirect interactions

Indirect interactions play an essential role in governing population, community and coevolutionary dynamics across a diverse range of ecological communities. Such communities are widely represented as bipartite networks: graphs depicting interactions between two groups of species, such as plants and pollinators or hosts and parasites. For over thirty years, studies have used indices, such as connectance and species degree, to characterise the structure of these networks and the roles of their constituent species. However, compressing a complex network into a single metric necessarily discards large amounts of information about indirect interactions. Given the large literature demonstrating the importance and ubiquity of indirect effects, many studies of network structure are likely missing a substantial piece of the ecological puzzle. Here we use the emerging concept of bipartite motifs to outline a new framework for bipartite networks that incorporates indirect interactions. While this framework is a significant departure from the current way of thinking about bipartite ecological networks, we show that this shift is supported by analyses of simulated and empirical data. We use simulations to show how consideration of indirect interactions can highlight differences missed by the current index paradigm that may be ecologically important. We extend this finding to empirical plant–pollinator communities, showing how two bee species, with similar direct interactions, differ in how specialised their competitors are. These examples underscore the need to not rely solely on network‐ and species‐level indices for characterising the structure of bipartite ecological networks.     

Seed‐dispersal networks respond differently to resource effects in open and forest habitats

While patterns in species diversity have been well studied across large‐scale environmental gradients, little is known about how species’ interaction networks change in response to abiotic and biotic factors across such gradients. Here we studied seed‐dispersal networks on 50 study plots distributed over ten different habitat types on the southern slopes of Mt Kilimanjaro, Tanzania, to disentangle the effects of climate, habitat structure, fruit diversity and fruit availability on different measures of interaction diversity. We used direct observations to record the interactions of frugivorous birds and mammals with fleshy‐fruited plants and recorded climatic conditions, habitat structure, fruit diversity and availability. We found that Shannon interaction diversity (H) increased with fruit diversity and availability, whereas interaction evenness (E_H) and network specialization (H₂) responded differently to changes in fruit availability depending on habitat structure. The direction of the effects of fruit availability on E_H and H₂ differed between open habitats at the mountain base and structurally complex habitats in the forest belt. Our findings illustrate that interaction networks react differently to changes in environmental conditions in different ecosystems. Hence, our findings demonstrate that future projections of network structure and associated ecosystem functions need to account for habitat differences among ecosystems.     

Context‐dependency and anthropogenic effects on individual plant–frugivore networks

Anthropogenic activities, such as grazing by domestic animals, are considered drivers of environmental changes that may influence the structure of interaction networks. The study of individual‐based networks allows testing how species‐level interaction patterns emerge from the pooled interaction modes of individuals within populations. Exponential random graph models (ERGMs) examine the global structure of networks by allowing the inclusion of specific node (i.e. interacting partners) properties as explanatory covariates. Here we assessed the structure of individual plant–frugivore interaction networks and the ecological variables that influence the mode of interactions under different land‐use (grazed versus ungrazed protected areas). We quantified the number of visits, the number of fruits removed per visit and the interaction strength of mammal frugivore species at each individual tree. Additionally we quantified ecological variables at the individual, microhabitat, neighborhood and habitat scales that generated interaction network structure under the different land uses. Individual plant–frugivore networks were significantly modular in both land uses but the number of modules was higher in the grazed areas. We found interaction networks for grazed and ungrazed lands were structured by phenotypic traits of individual trees, by the microhabitat beneath the tree canopy and were affected by habitat modifications of anthropogenic origin. The neighborhood surrounding each individual plant influenced plant–frugivore interactions only at the grazed‐land trees. We conclude that anthropogenic land uses influence the topological patterns of plant–frugivore networks and the frugivore visitation to trees through modification of both habitat complexity and the ecological traits underlying interactions between individual plants and frugivore species.     

The dimensionality of ecological networks

How many dimensions (trait‐axes) are required to predict whether two species interact? This unanswered question originated with the idea of ecological niches, and yet bears relevance today for understanding what determines network structure. Here, we analyse a set of 200 ecological networks, including food webs, antagonistic and mutualistic networks, and find that the number of dimensions needed to completely explain all interactions is small ( < 10), with model selection favouring less than five. Using 18 high‐quality webs including several species traits, we identify which traits contribute the most to explaining network structure. We show that accounting for a few traits dramatically improves our understanding of the structure of ecological networks. Matching traits for resources and consumers, for example, fruit size and bill gape, are the most successful combinations. These results link ecologically important species attributes to large‐scale community structure.     

Landscape simplification shapes pathogen prevalence in plant‐pollinator networks

Species interaction networks, which play an important role in determining pathogen transmission and spread in ecological communities, can shift in response to agricultural landscape simplification. However, we know surprisingly little about how landscape simplification‐driven changes in network structure impact epidemiological patterns. Here, we combine mathematical modelling and data from eleven bipartite plant‐pollinator networks observed along a landscape simplification gradient to elucidate how changes in network structure shape disease dynamics. Our empirical data show that landscape simplification reduces pathogen prevalence in bee communities via increased diet breadth of the dominant species. Furthermore, our empirical data and theoretical model indicate that increased connectance reduces the likelihood of a disease outbreak and decreases variance in prevalence among bee species in the community, resulting in a dilution effect. Because infectious diseases are implicated in pollinator declines worldwide, a better understanding of how land use change impacts species interactions is therefore critical for conserving pollinator health.     

基于物种分布的北京平原生态网络构建

高强度的城市化活动导致了生物栖息地破碎化、退化和消失,是生物多样性减少的主要原因。建立城市地区生态网络是保护生物多样性的重要途径。因其他物种数据可获得性差,以观测的典型鸟类群落为指示物种,探讨构建生态网络,可为城市生物多样性保护提供新思路。以北京市平原区为研究范围,重点基于86种鸟类分布大数据,通过Maxent模型掩膜生成栖息地源地并进行分级,在GIS技术的支撑下,以土地利用数据建立鸟类活动阻力面,采用最小累积阻力模型算法,模拟并形成了平原地区分级的生物多样性保护网络。研究结果表明,河湖湿地和城市公园组成了北京平原地区生态网络的优势景观类型,占平原区生态空间的81%。基于景观类型大小与物种数量的线性关系筛选出分级生物栖息地,其中一级生物栖息地58个,二级生物栖息地146个,通过模型模拟形成了平原地区生物多样性保护的一二级生态网络,共948条网络,长3760km。筛选出重要生态节点12处,关键生态廊道6条,是保护平原地区生物多样性的重要生态设施。该生态网络的实施对于提升首都平原区的生物多样性具有重要价值,研究结果可为国土生态空间优化提供重要科学依据和参考。     

Between‐year changes in community composition shape species’ roles in an Arctic plant–pollinator network

Inter‐annual turnover in community composition can affect the richness and functioning of ecological communities. If incoming and outgoing species do not interact with the same partners, ecological functions such as pollination may be disrupted. Here, we explore the extent to which turnover affects species’ roles – as defined based on their participation in different motifs positions – in a series of temporally replicated plant–pollinator networks from high‐Arctic Zackenberg, Greenland. We observed substantial turnover in the plant and pollinator assemblages, combined with significant variation in species’ roles between networks. Variation in the roles of plants and pollinators tended to increase with the amount of community turnover, although a negative interaction between turnover in the plant and pollinator assemblages complicated this trend for the roles of pollinators. This suggests that increasing turnover in the future will result in changes to the roles of plants and likely those of pollinators. These changing roles may in turn affect the functioning or stability of this pollination network.     

Spatial resolution and location impact group structure in a marine food web

Ecological processes in food webs depend on species interactions. By identifying broad‐scaled interaction patterns, important information on species' ecological roles may be revealed. Here, we use the group model to examine how spatial resolution and proximity influence group structure. We examine a data set from the Barents Sea, with food webs described for both the whole region and 25 subregions. We test how the group structure in the networks differ comparing (1) the regional metaweb to subregions and (2) subregion to subregion. We find that more than half the species in the metaweb change groups when compared to subregions. Between subregions, networks with similar group structure are spatially related. Interestingly, although species overlap is important for similarity in group structure, there are notable exceptions. Our results highlight that species ecological roles vary depending on fine‐scaled differences in the patterns of interactions, and that local network characteristics are important to consider.     

Refuges from fire maintain pollinator–plant interaction networks

Fire is a major disturbance factor in many terrestrial ecosystems, leading to landscape transformation in fire‐prone areas. Species in mutualistic interactions are often highly sensitive to disturbances like fire events, but the degree and complexity of their responses are unclear. We use bipartite insect–flower interaction networks across a recently burned landscape to explore how plant–pollinator interaction networks respond to a recent major fire event at the landscape level, and where fire refuges were present. We also investigate the effectiveness of these refuges at different elevations (valley to hilltop) for the conservation of displaced flower‐visiting insects during fire events. Then, we explore how the degree of specialization of flower‐visiting insects changes across habitats with different levels of fire impact. We did this in natural areas in the Greater Cape Floristic Region (GCFR) biodiversity hotspot, which is species rich in plants and pollinators. Bees and beetles were the most frequent pollinators in interactions, followed by wasps and flies. Highest interaction activity was in the fire refuges and least in burned areas. Interactions also tracked flower abundance, which was highest in fire refuges in the valley and lowest in burned areas. Interactions consisted mostly of specialized flower visitors, especially in refuge areas. The interaction network and species specialization were lowest in burned areas. However, species common to at least two fire classes showed no significant difference in species specialization. We conclude that flower‐rich fire refuges sustain plant–pollinator interactions, especially those involving specialized species, in fire‐disturbed landscape. This may be an important shelter for specialized pollinator species at the time that the burned landscape goes through regrowth and succession as part of ecosystem recovery process after a major fire event.     

Analysing ecological networks of species interactions

Network approaches to ecological questions have been increasingly used, particularly in recent decades. The abstraction of ecological systems – such as communities – through networks of interactions between their components indeed provides a way to summarize this information with single objects. The methodological framework derived from graph theory also provides numerous approaches and measures to analyze these objects and can offer new perspectives on established ecological theories as well as tools to address new challenges. However, prior to using these methods to test ecological hypotheses, it is necessary that we understand, adapt, and use them in ways that both allow us to deliver their full potential and account for their limitations. Here, we attempt to increase the accessibility of network approaches by providing a review of the tools that have been developed so far, with – what we believe to be – their appropriate uses and potential limitations. This is not an exhaustive review of all methods and metrics, but rather, an overview of tools that are robust, informative, and ecologically sound. After providing a brief presentation of species interaction networks and how to build them in order to summarize ecological information of different types, we then classify methods and metrics by the types of ecological questions that they can be used to answer from global to local scales, including methods for hypothesis testing and future perspectives. Specifically, we show how the organization of species interactions in a community yields different network structures (e.g., more or less dense, modular or nested), how different measures can be used to describe and quantify these emerging structures, and how to compare communities based on these differences in structures. Within networks, we illustrate metrics that can be used to describe and compare the functional and dynamic roles of species based on their position in the network and the organization of their interactions as well as associated new methods to test the significance of these results. Lastly, we describe potential fruitful avenues for new methodological developments to address novel ecological questions.     

Species’ roles in food webs show fidelity across a highly variable oak forest

Ecological communities are composed of many species and an intricate network of interactions between them. Because of their overall complexity, an intriguing approach to understanding network structure is by breaking it down into the structural roles of its constituent species. The structural role of a species can be directly measured based on how it appears in network motifs – the basic building blocks of complex networks. Here, we study the distribution of species’ roles at three distinct spatio‐temporal scales (i.e. species, network, and temporal) in host–parasitoid networks collected across 22 sites over two years within a fragmented landscape of oaks in southern Finland. We found that species’ roles for hosts and parasitoids were heterogeneously distributed across the study system but that roles are strongly conserved over spatial scales. In addition, we found that species’ roles were remarkably consistent between years even in the presence of disturbances (e.g. species turnover). Overall, our results suggest that species’ roles are an intrinsic property of species that may be predictable over spatial and temporal scales.     

The functional biogeography of species: biogeographical species roles of birds in Wallacea and the West Indies

Biogeographical systems can be analyzed as networks of species and geographical units. Within such a biogeographical network, individual species may differ fundamentally in their linkage pattern, and therefore hold different topological roles. To advance our understanding of the relationship between species traits and large‐scale species distribution patterns in archipelagos, we use a network approach to classify birds as one of four biogeographical species roles: peripherals, connectors, module hubs, and network hubs. These roles are based upon the position of species within the modular network of islands and species in Wallacea and the West Indies. We test whether species traits – including habitat requirements, altitudinal range‐span, feeding guild, trophic level, and body length – correlate with species roles. In both archipelagos, habitat requirements, altitudinal range‐span and body length show strong relations to species roles. In particular, species that occupy coastal‐ and open habitats, as well as habitat generalists, show higher proportions of connectors and network hubs and thus tend to span several biogeographical modules (i.e. subregions). Likewise, large body size and a wide altitudinal range‐span are related to a wide distribution on many islands and across several biogeographical modules. On the other hand, species restricted to interior forest are mainly characterized as peripherals and, thus, have narrow and localized distributions within biogeographical modules rather than across the archipelago‐wide network. These results suggest that the ecological amplitude of a species is highly related to its geographical distribution within and across bio geographical subregions and furthermore supports the idea that large‐scale species distributions relate to distributions at the local community level. We finally discuss how our biogeographical species roles may correspond to the stages of the taxon cycle and other prominent theories of species assembly.     

Construction,validation, and application of nocturnal pollen transport networks in an agro‐ecosystem: a comparison using light microscopy and DNA metabarcoding

1. Moths are globally relevant as pollinators but nocturnal pollination remains poorly understood. Plant–pollinator interaction networks are traditionally constructed using either flower‐visitor observations or pollen‐transport detection using microscopy. Recent studies have shown the potential of DNA metabarcoding for detecting and identifying pollen‐transport interactions. However, no study has directly compared the realised observations of pollen‐transport networks between DNA metabarcoding and conventional light microscopy. 2. Using matched samples of nocturnal moths, we constructed pollen‐transport networks using two methods: light microscopy and DNA metabarcoding. Focussing on the feeding mouthparts of moths, we developed and provide reproducible methods for merging DNA metabarcoding and ecological network analysis to better understand species interactions. 3. DNA metabarcoding detected pollen on more individual moths, and detected multiple pollen types on more individuals than microscopy, although the average number of pollen types per individual was unchanged. However, after aggregating individuals of each species, metabarcoding detected more interactions per moth species. Pollen‐transport network metrics differed between methods because of variation in the ability of each to detect multiple pollen types per moth and to separate morphologically similar or related pollen. We detected unexpected but plausible moth–plant interactions with metabarcoding, revealing new detail about nocturnal pollination systems. 4. The nocturnal pollination networks observed using metabarcoding and microscopy were similar yet distinct, with implications for network ecologists. Comparisons between networks constructed using metabarcoding and traditional methods should therefore be treated with caution. Nevertheless, the potential applications of metabarcoding for studying plant–pollinator interaction networks are encouraging, especially when investigating understudied pollinators such as moths.     

Testing the link between species interactions and species co‐occurrence in a trophic network

Species interactions are dynamic processes that vary across environmental and ecological contexts, and operate across scale boundaries, making them difficult to quantify. Nevertheless, ecologists are increasingly interested in inferring species interactions from observational data using statistical analyses of their spatial co‐occurrence patterns. Trophic interactions present a particular challenge, as predators and prey may frequently or rarely co‐occur, depending on the spatial or temporal scale of observation. In this study, we investigate the accuracy of inferred interactions among species that both compete and trophically interact. We utilized a long‐term dataset of pond‐breeding amphibian co‐occurrences from Mt Rainier National Park (Washington, USA) and compiled a new dataset of their empirical interactions from the literature. We compared the accuracy of four statistical methods in inferring these known species interactions from spatial associations. We then used the best performing statistical method, the Markov network, to further investigate the sensitivity of interaction inference to spatial scale‐dependence and the presence of predators. We show that co‐occurrence methods are generally inaccurate when estimating trophic interactions. Further the strength and sign of inferred interactions were dependent upon the spatial scale of observation and predator presence influenced the detectability of competitive interactions among prey species. However, co‐occurrence analysis revealed new patterns of spatial association among pairs of species with known interactions. Overall, our study highlights a limiting frontier in co‐occurrence theory and the disconnect between widely implemented methodologies and their ability to accurately infer interactions in trophically‐structured communities.     

Does the sociality of pollinators shape the organisation of pollination networks?

A striking structural pattern of pollination networks is the presence of a few highly connected species which has implications for ecological and evolutionary processes that create and maintain diversity. To understand the structure and dynamics of pollination networks we need to know which mechanisms allow the emergence of highly connected species. We investigate whether social pollinator species are highly connected in pollination networks, and whether network structure is affected by the presence of high proportions of social pollinator species. Social insects are abundant, with long activity periods and, at the highest level of social organisation, specialised foraging castes. These three attributes are likely to increase the number of interactions of social species and, consequently, their role in pollination networks. We find that social species have, on average, more prominent network roles than solitary species, a possible mechanism being the individual‐rich colonies of social insects. However, when accounting for the shared evolutionary history of pollinators, sociality is only associated with highly interactive roles in Apidae. For apid bees, our structural equation analysis shows that the effect of sociality on species network roles is an indirect result of their high levels of interaction frequency. Despite the relative importance of sociality at a species‐level, an increasing proportion of social species in pollination networks did not affect overall network structure. Our results suggest that behavioural traits may shape patterns of interaction of individual species but not the network‐level organisation of species interactions. Instead, network structure appears to be determined by more general aspects of ecological systems such as interaction intimacy, patterns of niche overlap, and species abundance distributions.     

Global patterns in anuran–prey networks: structure mediated by latitude

Life on Earth is supported by an infinite number of interactions among organisms. Species interactions in these networks are influenced by latitude, evolutionary history and species traits. We performed a global‐scale literature analysis to build up a database of interactions between anuran communities and their preys, from a wide range of geographical areas, using a network approach. For this purpose, we compiled a total of 55 weighted anuran–prey interaction networks, 39 located in the tropics and 16 in temperate areas. We tested the influence of latitude, as well as anuran taxonomic, functional and phylogenetic richness on network metrics. We found that anuran–prey networks are not nested, exhibit low complementary specialization and modularity and high connectance when compared to other types of networks. The main effects on network metrics were related to latitude, followed by anuran taxonomic, functional and phylogenetic richness, a pattern similar to the emerging in mutualistic networks. Our study is the first integrated analysis of the structural patterns in anuran–prey antagonistic interaction networks in different parts of the world. We suggest that different processes, mediated mainly by latitude, are modeling the architecture of anuran–prey networks across the globe.